RchiOBHm_Chr6g0304941

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000203
Physical Location & Seq
Reverse (-)
64059717 .. 64061022
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27403

Sequence Viewer

Length: 684 bp
ATGTTTCTATCAAAAGAAAGAGAAAAGACAAATGACTATATACTTCACCAGACTAACAGACTTCGATATACGTACTTGCAGATTCCAGTCTTAAGAAGTCTAGTAGCGATGTCAATTGGGGGTTGTCATAGTTTGAGAACTCTGCTCTCTCCTTCAATCGCCAGAGGTCTTGTGAAGCTCAAAGCACTAAGTATCTTTGGCTGCGAGAAGATTGAAGAGATAGTAGCAGCAGCAGCAGAGGGTGATGAAGAAACAGAGGATGACAACATCTTCCCTCAGCTGACAGAATTGTCGCTTAAAAATCTACCTAATCTCAGAACTCTGCTCTCCCCTTCAATCGCCAGAGGTCTTGTCAAGCTCGAAACACTAGAGATTGAAAACTGCGAGAAGATTGAAGAGATAGTAGCAGCAGCAGCAGAGGGTGATGAAGAAACAGAGGATGACAACATCTTCCCTCAGCTGACAGAATTGTCGCTTCACAATCTACCCAATCTCAGAAGCTTTTCGCAAGGCAAATGTAATTTCAAATGGCCGCTAGTGAAATTTATAAGAATCAGGGGATGCTGCAATATGAAGAAGTTTTGTTTCGGATCCGTCAGCATACCATGGGAAGTGCGATTGGACGTCAGCGATGTTGGTGAGAATGTTTTGCAGGAGCTGAAGAACAGTAGAAAAGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

227

Amino Acids

25.68

Weight (kDa)

5.44

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 27 - 69 4.9e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 86 - 192 1.8e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 548
AasI GACNNNNNNGTC 2 cut(s) 289, 469
AatII GACGTC 1 cut(s) 627
AciI CCGC 1 cut(s) 533
AclWI GGATC 2 cut(s) 585, 598
AcoI YGGCCR 1 cut(s) 530
AcsI RAATTY 1 cut(s) 542
AcuI CTGAAG 1 cut(s) 680
AcyI GRCGYC 1 cut(s) 624
AfaI GTAC 1 cut(s) 74
AflII CTTAAG 1 cut(s) 91
AgsI TTSAA 6 cut(s) 156, 215, 336, 377, 395, 526
AluBI AGCT 6 cut(s) 178, 280, 358, 460, 501, 658
AluI AGCT 6 cut(s) 178, 280, 358, 460, 501, 658
AlwI GGATC 2 cut(s) 585, 598
AlwNI CAGNNNCTG 1 cut(s) 658
AoxI GGCC 1 cut(s) 530
ApeKI GCWGC 8 cut(s) 201, 227, 230, 233, 407, 410, 413, 564
ApoI RAATTY 1 cut(s) 542
Asp700I GAANNNNTTC 1 cut(s) 502
AsuHPI GGTGA 4 cut(s) 38, 254, 434, 650
BamHI GGATCC 1 cut(s) 590
BbvCI CCTCAGC 2 cut(s) 276, 456
BbvI GCAGC 8 cut(s) 188, 239, 242, 245, 419, 422, 425, 551
BfaI CTAG 3 cut(s) 101, 368, 536
BfrI CTTAAG 1 cut(s) 91
BisI GCNGC 9 cut(s) 202, 228, 231, 234, 408, 411, 414, 533, 565
BlsI GCNGC 9 cut(s) 203, 229, 232, 235, 409, 412, 415, 534, 566
BmiI GGNNCC 1 cut(s) 592
BmsI GCATC 1 cut(s) 551
Bpu10I CCTNAGC 2 cut(s) 276, 456
BsaAI YACGTR 1 cut(s) 72
BsaHI GRCGYC 1 cut(s) 624
BsaJI CCNNGG 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 605
BseGI GGATG 3 cut(s) 265, 445, 566
BseMII CTCAG 4 cut(s) 290, 328, 470, 508
BseNI ACTGG 1 cut(s) 86
BseXI GCAGC 8 cut(s) 188, 239, 242, 245, 419, 422, 425, 551
BshFI GGCC 1 cut(s) 532
BsnI GGCC 1 cut(s) 532
Bsp143I GATC 1 cut(s) 590
Bsp19I CCATGG 1 cut(s) 605
BspACI CCGC 1 cut(s) 533
BspANI GGCC 1 cut(s) 532
BspCNI CTCAG 4 cut(s) 289, 327, 469, 507
BspLI GGNNCC 1 cut(s) 592
BspPI GGATC 2 cut(s) 585, 598
BspTI CTTAAG 1 cut(s) 91
BsrI ACTGG 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 605
BssMI GATC 1 cut(s) 590
BssNI GRCGYC 1 cut(s) 624
BssT1I CCWWGG 1 cut(s) 605
Bst4CI ACNGT 1 cut(s) 668
Bst6I CTCTTC 2 cut(s) 210, 390
BstACI GRCGYC 1 cut(s) 624
BstAFI CTTAAG 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 72
BstDEI CTNAG 5 cut(s) 188, 276, 314, 456, 494
BstDSI CCRYGG 1 cut(s) 605
BstF5I GGATG 3 cut(s) 265, 445, 566
BstKTI GATC 1 cut(s) 593
BstMBI GATC 1 cut(s) 590
BstMWI GCNNNNNNNGC 2 cut(s) 233, 413
BstSNI TACGTA 1 cut(s) 72
BstV1I GCAGC 8 cut(s) 188, 239, 242, 245, 419, 422, 425, 551
BstX2I RGATCY 1 cut(s) 590
BstYI RGATCY 1 cut(s) 590
BsuRI GGCC 1 cut(s) 532
BtgI CCRYGG 1 cut(s) 605
BtgZI GCGATG 2 cut(s) 122, 645
BtsCI GGATG 3 cut(s) 265, 445, 566
CaiI CAGNNNCTG 1 cut(s) 658
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 606
CviJI RGCY 8 cut(s) 178, 201, 280, 358, 460, 501, 532, 658
CviKI_1 RGCY 8 cut(s) 178, 201, 280, 358, 460, 501, 532, 658
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 5 cut(s) 188, 276, 314, 456, 494
DpnI GATC 1 cut(s) 592
DpnII GATC 1 cut(s) 590
DrdI GACNNNNNNGTC 2 cut(s) 289, 469
DseDI GACNNNNNNGTC 2 cut(s) 289, 469
EaeI YGGCCR 1 cut(s) 530
Eam1104I CTCTTC 2 cut(s) 210, 390
EarI CTCTTC 2 cut(s) 210, 390
Eco105I TACGTA 1 cut(s) 72
Eco130I CCWWGG 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 680
EcoT14I CCWWGG 1 cut(s) 605
ErhI CCWWGG 1 cut(s) 605
FaeI CATG 1 cut(s) 609
FaiI YATR 8 cut(s) 39, 41, 69, 129, 548, 572, 602, 607
FatI CATG 1 cut(s) 605
Fnu4HI GCNGC 9 cut(s) 202, 228, 231, 234, 408, 411, 414, 533, 565
FokI GGATG 3 cut(s) 272, 452, 573
Fsp4HI GCNGC 9 cut(s) 202, 228, 231, 234, 408, 411, 414, 533, 565
FspBI CTAG 3 cut(s) 101, 368, 536
GluI GCNGC 9 cut(s) 202, 228, 231, 234, 408, 411, 414, 533, 565
HaeIII GGCC 1 cut(s) 532
Hin1I GRCGYC 1 cut(s) 624
Hin1II CATG 1 cut(s) 609
HindIII AAGCTT 1 cut(s) 499
HinfI GANTC 2 cut(s) 82, 552
HphI GGTGA 4 cut(s) 38, 254, 434, 650
Hpy188I TCNGA 3 cut(s) 317, 497, 590
HpyAV CCTTC 2 cut(s) 162, 342
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4IV ACGT 2 cut(s) 71, 624
HpyCH4V TGCA 3 cut(s) 79, 567, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 413
HpyF3I CTNAG 5 cut(s) 188, 276, 314, 456, 494
HpySE526I ACGT 2 cut(s) 71, 624
Hsp92I GRCGYC 1 cut(s) 624
Hsp92II CATG 1 cut(s) 609
Kzo9I GATC 1 cut(s) 590
LmnI GCTCC 1 cut(s) 655
LpnPI CCDG 6 cut(s) 62, 99, 175, 355, 541, 638
Lsp1109I GCAGC 8 cut(s) 188, 239, 242, 245, 419, 422, 425, 551
LweI GCATC 1 cut(s) 551
MaeI CTAG 3 cut(s) 101, 368, 536
MaeII ACGT 2 cut(s) 71, 624
MalI GATC 1 cut(s) 592
MboI GATC 1 cut(s) 590
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 1 cut(s) 590
MluCI AATT 5 cut(s) 114, 287, 467, 520, 542
MnlI CCTC 8 cut(s) 158, 232, 250, 285, 338, 412, 430, 465
MroXI GAANNNNTTC 1 cut(s) 502
MseI TTAA 2 cut(s) 92, 297
MspA1I CMGCKG 2 cut(s) 280, 460
MspCI CTTAAG 1 cut(s) 91
MunI CAATTG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 233, 413
NcoI CCATGG 1 cut(s) 605
NdeII GATC 1 cut(s) 590
NlaIII CATG 1 cut(s) 609
NlaIV GGNNCC 1 cut(s) 592
PdmI GAANNNNTTC 1 cut(s) 502
PfeI GAWTC 2 cut(s) 82, 552
PkrI GCNGC 9 cut(s) 203, 229, 232, 235, 409, 412, 415, 534, 566
Ppu21I YACGTR 1 cut(s) 72
PsiI TTATAA 1 cut(s) 548
PspN4I GGNNCC 1 cut(s) 592
PstNI CAGNNNCTG 1 cut(s) 658
PsuI RGATCY 1 cut(s) 590
PvuII CAGCTG 2 cut(s) 280, 460
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 92, 297
SatI GCNGC 9 cut(s) 202, 228, 231, 234, 408, 411, 414, 533, 565
Sau3AI GATC 1 cut(s) 590
SfaNI GCATC 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SnaBI TACGTA 1 cut(s) 72
Sse9I AATT 5 cut(s) 114, 287, 467, 520, 542
SsiI CCGC 1 cut(s) 533
SspMI CTAG 3 cut(s) 101, 368, 536
StyI CCWWGG 1 cut(s) 605
TaaI ACNGT 1 cut(s) 668
TaiI ACGT 2 cut(s) 74, 627
TaqI TCGA 2 cut(s) 64, 360
TasI AATT 5 cut(s) 114, 287, 467, 520, 542
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 2 cut(s) 82, 552
Tru1I TTAA 2 cut(s) 92, 297
Tru9I TTAA 2 cut(s) 92, 297
TseI GCWGC 8 cut(s) 201, 227, 230, 233, 407, 410, 413, 564
TspDTI ATGAA 3 cut(s) 261, 441, 587
TspGWI ACGGA 1 cut(s) 583
Vha464I CTTAAG 1 cut(s) 91
XapI RAATTY 1 cut(s) 542
XmnI GAANNNNTTC 1 cut(s) 502
XspI CTAG 3 cut(s) 101, 368, 536
ZraI GACGTC 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.