Rmu_sc0009256.1_g000004

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009256.1
OG0000203
Physical Location & Seq
Forward (+)
16908 .. 18481
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009256.1_g000004.1.cds

Sequence Viewer

Length: 852 bp
atggcagtcagcggaacagaagatatcactacatttatcactgataatgaaaaacaacagaccggtcctcctaagaagaaaggtagagggggagctaagggtgaaaagggacatggcatgctagttgatatacatgacggaagctttgaggattgggtggttgagaaactagcctcgactgaaacaaccaattggatctctcaaatggaggttgaggaaagaccggcatccaaagaagtagaccactgggaaacgacactggacacgtggaagagattcaacaaattagcagctgagcaaccaacaaacgtagggaagcaatttagagaagaggttcaaggtctccttagagcaaacgatgagcaaacaaggtgggccagccccatggactggaaaactggtatacttgcggagctactttccttgtcccatttgactactttagaagtttttctaccactggttagtgagatactaaccagcaatttatttaacaagctggaaagatttaagttctctataggatggaagcaccctatgtataattgggaactaaagcataatgacaactacttgggagttcacgatcttaatgcaagcgctactgtgggtagtggaatcactttgttgctaaagaaaaccagcattcttgagtttagaatgaagaatatgaccaaacctcaagctctgaatgtcttagatacagatcagtaccatttcgcaaagatgaagtctcttacactaaaggagtgtgaagctgtgaagtatcggattgacaggacactttcgaaacataatactccacataccagcagcggcctctttcctgtgttgaattcactagtgaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

283

Amino Acids

32.2

Weight (kDa)

6.81

Isoelectric Point (pI)

28.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 390
AccI GTMKAC 2 cut(s) 240, 403
AciI CCGC 3 cut(s) 12, 410, 816
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 1 cut(s) 835
AcvI CACGTG 1 cut(s) 267
AfaI GTAC 1 cut(s) 713
AfeI AGCGCT 1 cut(s) 601
AfiI CCNNNNNNNGG 1 cut(s) 390
AflIII ACRYGT 1 cut(s) 264
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 3 cut(s) 280, 338, 835
AhlI ACTAGT 1 cut(s) 841
AluBI AGCT 7 cut(s) 95, 144, 293, 415, 499, 686, 758
AluI AGCT 7 cut(s) 95, 144, 293, 415, 499, 686, 758
Alw26I GTCTC 2 cut(s) 347, 738
AlwI GGATC 1 cut(s) 203
Aor51HI AGCGCT 1 cut(s) 601
AoxI GGCC 2 cut(s) 375, 817
ApeKI GCWGC 2 cut(s) 290, 813
ApoI RAATTY 1 cut(s) 835
ArsI GACNNNNNNTTYG 4 cut(s) 128, 160, 716, 748
AsiGI ACCGGT 1 cut(s) 62
Asp700I GAANNNNTTC 3 cut(s) 275, 333, 450
AspLEI GCGC 1 cut(s) 602
AspS9I GGNCC 2 cut(s) 65, 375
AsuHPI GGTGA 1 cut(s) 113
AsuII TTCGAA 1 cut(s) 788
AvaII GGWCC 1 cut(s) 65
BarI GAAGNNNNNNTAC 2 cut(s) 438, 470
BbrPI CACGTG 1 cut(s) 267
BbvI GCAGC 2 cut(s) 302, 825
BccI CCATC 1 cut(s) 519
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BcoDI GTCTC 2 cut(s) 347, 738
BcuI ACTAGT 1 cut(s) 841
BfaI CTAG 3 cut(s) 122, 170, 842
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 603
BisI GCNGC 3 cut(s) 291, 814, 817
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 3 cut(s) 292, 815, 818
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 65, 375
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 236
BmuI ACTGGG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 294
Bpu14I TTCGAA 1 cut(s) 788
BpuEI CTTGAG 2 cut(s) 666, 671
BsaAI YACGTR 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 705
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse118I RCCGGY 2 cut(s) 62, 223
Bse1I ACTGG 5 cut(s) 251, 264, 395, 403, 465
Bse8I GATNNNNATC 1 cut(s) 705
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 2 cut(s) 227, 530
BseJI GATNNNNATC 1 cut(s) 705
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 5 cut(s) 251, 264, 395, 403, 465
BseXI GCAGC 2 cut(s) 302, 825
BshFI GGCC 2 cut(s) 377, 819
BshTI ACCGGT 1 cut(s) 62
BsiSI CCGG 2 cut(s) 63, 224
BslFI GGGAC 2 cut(s) 123, 412
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 2 cut(s) 347, 738
BsmFI GGGAC 2 cut(s) 123, 412
BsmI GAATGC 1 cut(s) 645
BsnI GGCC 2 cut(s) 377, 819
Bso31I GGTCTC 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 788
Bsp143I GATC 3 cut(s) 195, 586, 706
Bsp1720I GCTNAGC 1 cut(s) 294
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 3 cut(s) 12, 410, 816
BspANI GGCC 2 cut(s) 377, 819
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 203
BspT104I TTCGAA 1 cut(s) 788
BspTNI GGTCTC 1 cut(s) 347
BsrFI RCCGGY 2 cut(s) 62, 223
BsrI ACTGG 5 cut(s) 251, 264, 395, 403, 465
BssAI RCCGGY 2 cut(s) 62, 223
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 3 cut(s) 195, 586, 706
BssNAI GTATAC 1 cut(s) 404
BssT1I CCWWGG 1 cut(s) 384
Bst1107I GTATAC 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 607
Bst6I CTCTTC 2 cut(s) 266, 324
BstBAI YACGTR 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 788
BstC8I GCNNGC 3 cut(s) 119, 379, 598
BstDEI CTNAG 5 cut(s) 72, 96, 294, 347, 697
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 2 cut(s) 227, 530
BstH2I RGCGCY 1 cut(s) 603
BstHHI GCGC 1 cut(s) 602
BstKTI GATC 3 cut(s) 198, 589, 709
BstMAI GTCTC 2 cut(s) 347, 738
BstMBI GATC 3 cut(s) 195, 586, 706
BstNSI RCATGY 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 2 cut(s) 302, 825
BstX2I RGATCY 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 385
BstYI RGATCY 1 cut(s) 195
BstZ17I GTATAC 1 cut(s) 404
BsuRI GGCC 2 cut(s) 377, 819
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 2 cut(s) 227, 530
BtsIMutI CAGTG 4 cut(s) 39, 244, 257, 458
Cac8I GCNNGC 3 cut(s) 119, 379, 598
CfoI GCGC 1 cut(s) 602
Cfr10I RCCGGY 2 cut(s) 62, 223
Cfr13I GGNCC 2 cut(s) 65, 375
Csp6I GTAC 1 cut(s) 712
CspAI ACCGGT 1 cut(s) 62
CspCI CAANNNNNGTGG 2 cut(s) 353, 388
CviAII CATG 4 cut(s) 113, 118, 134, 385
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 5 cut(s) 72, 96, 294, 347, 697
DpnI GATC 3 cut(s) 197, 588, 708
DpnII GATC 3 cut(s) 195, 586, 706
Eam1104I CTCTTC 2 cut(s) 266, 324
EarI CTCTTC 2 cut(s) 266, 324
Eco130I CCWWGG 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 347
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 65
Eco47III AGCGCT 1 cut(s) 601
Eco72I CACGTG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 835
EcoRV GATATC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 4 cut(s) 116, 121, 137, 388
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 2 cut(s) 123, 412
FatI CATG 4 cut(s) 112, 117, 133, 384
FblI GTMKAC 2 cut(s) 240, 403
Fnu4HI GCNGC 3 cut(s) 291, 814, 817
FokI GGATG 2 cut(s) 214, 537
Fsp4HI GCNGC 3 cut(s) 291, 814, 817
FspBI CTAG 3 cut(s) 122, 170, 842
GlaI GCGC 1 cut(s) 601
GluI GCNGC 3 cut(s) 291, 814, 817
HaeII RGCGCY 1 cut(s) 603
HaeIII GGCC 2 cut(s) 377, 819
HapII CCGG 2 cut(s) 63, 224
HhaI GCGC 1 cut(s) 602
Hin1II CATG 4 cut(s) 116, 121, 137, 388
Hin6I GCGC 1 cut(s) 600
HinP1I GCGC 1 cut(s) 600
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 2 cut(s) 276, 618
HpaII CCGG 2 cut(s) 63, 224
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 3 cut(s) 241, 404, 583
Hpy188I TCNGA 2 cut(s) 690, 771
Hpy188III TCNNGA 2 cut(s) 584, 650
Hpy8I GTNNAC 3 cut(s) 241, 404, 583
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4IV ACGT 2 cut(s) 266, 309
HpyCH4V TGCA 1 cut(s) 596
HpyF3I CTNAG 5 cut(s) 72, 96, 294, 347, 697
HpySE526I ACGT 2 cut(s) 266, 309
Hsp92II CATG 4 cut(s) 116, 121, 137, 388
HspAI GCGC 1 cut(s) 600
Kzo9I GATC 3 cut(s) 195, 586, 706
LmnI GCTCC 2 cut(s) 92, 412
Lsp1109I GCAGC 2 cut(s) 302, 825
LweI GCATC 1 cut(s) 236
MaeI CTAG 3 cut(s) 122, 170, 842
MaeII ACGT 2 cut(s) 266, 309
MalI GATC 3 cut(s) 197, 588, 708
MboI GATC 3 cut(s) 195, 586, 706
MboII GAAGA 5 cut(s) 32, 88, 283, 341, 676
MfeI CAATTG 1 cut(s) 190
MflI RGATCY 1 cut(s) 195
MluCI AATT 6 cut(s) 190, 284, 320, 484, 544, 835
MnlI CCTC 9 cut(s) 78, 80, 142, 184, 202, 208, 325, 690, 830
MroXI GAANNNNTTC 3 cut(s) 275, 333, 450
MseI TTAA 3 cut(s) 492, 510, 591
MspA1I CMGCKG 3 cut(s) 12, 293, 816
MspI CCGG 2 cut(s) 63, 224
MunI CAATTG 1 cut(s) 190
Mva1269I GAATGC 1 cut(s) 645
NcoI CCATGG 1 cut(s) 384
NdeII GATC 3 cut(s) 195, 586, 706
NlaIII CATG 4 cut(s) 116, 121, 137, 388
NspI RCATGY 1 cut(s) 121
NspV TTCGAA 1 cut(s) 788
PaeI GCATGC 1 cut(s) 121
PctI GAATGC 1 cut(s) 645
PdmI GAANNNNTTC 3 cut(s) 275, 333, 450
PfeI GAWTC 2 cut(s) 276, 618
PflMI CCANNNNNTGG 1 cut(s) 390
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 3 cut(s) 292, 815, 818
PmaCI CACGTG 1 cut(s) 267
PmlI CACGTG 1 cut(s) 267
Ppu21I YACGTR 1 cut(s) 267
PspCI CACGTG 1 cut(s) 267
PspPI GGNCC 2 cut(s) 65, 375
PsuI RGATCY 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
SaqAI TTAA 3 cut(s) 492, 510, 591
SatI GCNGC 3 cut(s) 291, 814, 817
Sau3AI GATC 3 cut(s) 195, 586, 706
Sau96I GGNCC 2 cut(s) 65, 375
SfaNI GCATC 1 cut(s) 236
SfcI CTRYAG 1 cut(s) 519
SfuI TTCGAA 1 cut(s) 788
SinI GGWCC 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 650, 681
SmoI CTYRAG 2 cut(s) 650, 681
SpeI ACTAGT 1 cut(s) 841
SphI GCATGC 1 cut(s) 121
Sse9I AATT 6 cut(s) 190, 284, 320, 484, 544, 835
SsiI CCGC 3 cut(s) 12, 410, 816
SspMI CTAG 3 cut(s) 122, 170, 842
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 1 cut(s) 607
TaiI ACGT 2 cut(s) 269, 312
TaqI TCGA 2 cut(s) 176, 788
TasI AATT 6 cut(s) 190, 284, 320, 484, 544, 835
TauI GCSGC 1 cut(s) 819
TfiI GAWTC 2 cut(s) 276, 618
Tru1I TTAA 3 cut(s) 492, 510, 591
Tru9I TTAA 3 cut(s) 492, 510, 591
TscAI CASTG 4 cut(s) 46, 251, 264, 465
TseI GCWGC 2 cut(s) 290, 813
TspDTI ATGAA 3 cut(s) 63, 677, 743
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 4 cut(s) 46, 251, 264, 465
Van91I CCANNNNNTGG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 65
XapI RAATTY 1 cut(s) 835
XceI RCATGY 1 cut(s) 121
XmiI GTMKAC 2 cut(s) 240, 403
XmnI GAANNNNTTC 3 cut(s) 275, 333, 450
XspI CTAG 3 cut(s) 122, 170, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.