RchiOBHm_Chr6g0282051

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000203
Physical Location & Seq
Reverse (-)
45378905 .. 45386168
7264 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25300

Sequence Viewer

Length: 6108 bp
ATGGCAGATATTGTGATTACAGTTGTTGGAAAATTAGCAGAGTACACAGTCGCACCTGTTATGCGACAGTTTGGTTATCTGATTAACTACAAGAGCAATGTTAAAGATCTCAGAGAGAAGGTTACAAGTCTGACTGCCAAAAGAGAGGGGGTACTACAACGTGTGGATACAGCAAACAGGAACTTGGAGGCAATTCTTCCCGAAGTTCAGAACTGGTTGGAGCGAGTAGACCAGACCATAAAAGAAAAGGAGACATGTTTTGAAGAAGGAAGAGTAGCCAAGGCAACAACATGCTGCAGCTCCAATGGGTGGTGTCCAAATCTGAAGGTCCGTCATTCCTTGAGTAGGACAGCAAAGAAGATGGCTCCAAACGTTGATCACCTTATTACAGATGGAAATTTTACCACAATAACTTGTCGTGCTCCTCCGCGGAAGATTGATTATCCAGCCATTCAATATCCTGGGGATTCCACTGAGGCACCAGCGAAGGGGGCCAGCTCCTCCTCAGGAACATCCGATCCTGCTAAGCCACCTGCACCTATGGATCTCTCTGAGCGTCTGAAATATAGGTTGCCTTATACAAAGGATCTCTTGACGGCTCTGCAAGATGACAAGATCAGCATGATCGGCATTTCTGGGACAATCAGAGTGATAGATACAGTAACAACTAAAGAGTTCATGAAAAGAATGAAACAGAAAAAGCTCTTTGAAGAGGTTGCGATGGCAGTTGTGTCCCAGGATCCAGACTTGGAACGAATACAAGGTGAAATTGCAGAAATGCTAGACCTGAAATTGGAGAATGGGAGTTTGGTTGAACGGGCAGAGAGGCTACGTGCTGTTTTACAGGCATCCGATTCTAAGAAGATTCTTGTAATACTGACTGATATCTGTGAAATACCTGATTTGGAAGCAATTGGAATTTCTCGTGTTGATATCAAGAAAAGCTGCAAGATCATGTTGATTTCACAACTATCAAATGTGTTTGGTGAAATGGGGACTCAGAGCAATTTCAAATTGTTATCACAATCCACTCCCAGAGCAAGACCTGTTGAGTTTGAATCAAGAATTTCAGTCATCAGAGATGTAATGGATGCTCTGACAGATGATGAATCCAACCCCATTGTAATCTGTGGCATGGGGGGAATTGGCAAAACAACCTTGGTGATGGAAATTGCTGCAAAAGCGAGTGAAGTAGATCTATTTGATCATGTTGTAATTGCAGAGTTTACTCAAGAACCCGACTTGATCAAAATCCAATGTAAAATTGCTAATGCTCTAGATCTGGAACTTAAAGCAGAGGATGAGAGAGTAGCCAAGTTACGAGAAAGATTGTCAATGGATACGAAAAAGGTCCTTGTAATATTGGACAATTTTTGGGGACAACTAGATCTGTGGGAACTAGGAATTCCAATTTCCCGGGATCCAAAAAGTTGCAAACTTCTGGTGTCATCACGGAATCAAGATATCTTTAAAGATATGAAAACCAAAAAGAACTTCCTCATTGGTAGTTTGCTAAAACATGATGCCTGGAGTTTGTTTAAGAAGGTAGCAGGATGTTCCATTGAATCCGATTCCGAGCTGCGTCCTATAGCAGAGCAGGTTCTGGATGAATGTGATGGCTTACCGGTTGCAATTTCTACTGTTGGAAGGGCACTACAAGATGAAAAAATTCCAGTATGGAGAAATGCAGTTAGACAACTAAGAATGGCTTGCCCAAAAGATGTTCCAGGAGTTATAGAGCATGTGTACGGAAAAATAGAGTTCAGTTATGAATGTCTACCAAGCGAGGAAGCCAAATCATGTTTTTTGCTGTGTTGCATATTTCCAGAAGGTGAAGAGTTTCCAATTGAATTCTTGGTTATGTTTGCGATTGGGCTTGGACTTTTTAAAGACATTGATTCAATATCTGGAGCAAGGAATTACGTAATAACAGTGGTTGAAACACTCAAATGTCGTTCTCTGTTGTTAGACGGTGATGGGAAAGATTGTTTTAGAATGCATGATGTGGTGCGTGACGTAGCCGTGTATATAGCCTCCAAAGAGTTAGCACAAAAGAAGAGTGATAAGCTTGAAAGGAGATATATGGAAAGAGGAGGGGTGGAATTGAACGATTGGCTCAAGAGCAGTTCACTGAGAGCCGATATGAGTACTACTGAGCTTTTAGTGTTGGGACCCACAGATGGAATTGAACTGGATCTGCCAGCCACAATTTTCGATGGAATGGAAAATCTCAAGGTTTTAATGATCTGGTGTTCAATCCTCCCATCCCTTTCACTTCTGAAGAATCTTCAAACACTCAGTCTAGGGTGTTGCCGTCGCAATATTGATGTCATTGGAGAGCTACGGTCACTCATGATACTCAGGTTATATGGATCTGGCATCAAACAGTTGCCTGATACATTCAAAAATTTATCTAATCTGAGGTTGTTAAACTTGACAGGATGTACAGAGCTTAAAGTAATCTCACCAGGTGTTATATCGAGTTTATCTCGTCTAGAAGAATTGTACATGCCGAATAACTTTCATGGTTGGTTGGTTGAGAAACTGGGCTCAACAGAAACAATCAATTGGATCTCTCAATTGAAGGTTGATGCCCAACCAGAAGAAGTTGACAGATGGAAGAAATTCAACAGGTTGGCGGTTGAGAGGCTAGCCTCAGCAGAAACAACGACTGATCAGGTCTCTCAACTGGAGGATGAGGAAAGTAGCGAATCAGAGGAACTCGACTTCCTTGGATATCTGTTCGCAGAGTATGTTCGAGATTTAAAAGGAGACTACGACGATCTCACAAGGTGGGCCAAATCTATGGACTGGAGAGTTGGATTACTTTCAGAGCTACTTTCCTTGTCCCGTTTGACTACTTTAGAAGTGGTTTTACCACCAATTGAGATTCTGCGAACCAGTAAGCTATTTCATAAGCTTGAAAGATTTAAGATCTCTATTGGATGGGATGAGCATGAAGACTTGGAGGACTTAGAGGGTAACTACTTGAGAGTTTATAGTCTTGATGGAAGCTCTCTTGCGGATACTGAAATCAGTTTGTTGTTGAGGAAAACTAACCAGCTCGAGTTAAAAATGAAGAATTTGAGAGACCCTCTCAATGTCTTAGATGTAAACTGCTGTGCAAACTTGGAGTCACTTGCCCTCAAAGACTGTGATTCTCTGGACTATTTGATTGACATGACTCTTAAGCAAGATACTCCACGAAGCGTGTTTCCTGTCTTGAATTATCTGGAAATCAATGGAGCAAGGAGGCTGAAAGAGATTTTTCATGGTGACCTGCCACTTGGATCGCTTCAGAAACTAGAAAGGCTAACTTTACGGGATTGCAAGTCATTGGAAGCAATTTTTGCCTTGGAAGGATCGGAACATCATGTCAAAGAGATCAACTTCCCTAGTTTGACAAAGTTGGAACTTAAAGGTCTCCCGAGCTTCACTTTCCAGTCATTGGATCTAAACTGCTGTGCAAACTTGGAGTCACTTACCCTCAAAGACTATGATTCTCTGGAATATCTGATTGACATGACTCTTAAGCAAGATACTCCACGAAGCGTCTTTCCTGTCTTGAATTATCTAGAAATCAATAGAGCAAGGAGGTTGAAAGAGATTTTTCATGGTGAGATGCCACTGGGATCGCTTCAGAAACTAGAAAGGCTAACTTTATGGGATTGCAAGTCATTGGAAGCAATTTTTGCCATGGAAGGATCGGGACATCATGTCAAAGAGATCAACTTCCTTTGTTTGACAAAGTTGGAACTTAAAGGTCTCCCGAGCTTCACTTTCCAGTCATTGGATCTAAACTGCTGTGCAAACTTGAAGTCACTTACCCTCAAAGACTGTGATTCTCTGGAATATCTGATTGACATGACTCTTAAGCAAGATACTCCACGAAGCGTCTTTCCTGTCTTGAATTATCTGGAAATCAATAGAGCAAGGAGGATGAAAGAGATTTTTCATGGTGAGATGCCACTGGGATCGCTTCAGAAACTAGAAAGGCTAACTTTAGGGGATTGCAAGTCATTGGAAGCGATTTTTGCCATGGAAGGATCGGGACATCATGTCAAAGAGATCAACTTCCTTTGTTTGACAAAGTTGGAACTTAAAGGTCTCCCGAGCTTCACTTTCCAGTCATTGGATCTAAACTGCTGTGCAAACTTGAAGTCACTTACCCTCAAAGACTGTGATTCTCTGGAATATCTGATTGACATGACTCTTAAGCAAGATACTCCACGAAGCGTCTTTCCTGTCTTGAATTATCTGGAAATCAATGGAGCAAGGAGGCTGAAAGAGATTTTTCATGGTGAGTTGCCACTGGGATCGCTTCAGAAACTAGAAAGGCTAACTTTACGGGATTGCCAGTCATTGGAAGCAATTTTTGCCTTGGAAGGATCAGGACATCATGTCAAAGAGATCAACTTCCTTTGTTTGACAAAGTTGGAACTTAAAGGTCTCCCGAGCTTCACTTGCCAGTCATTGGATCTAAACTGCTGTGCAAACTTGGAGTCACTTACCCTCAAAAACTGTGATTCTCTGGAATATCTGATTGACATGACTCTTAAGCAAGATAATCCACGAAGCGTCTTTCCTGTCTTGAATTATCTGGAAATCAATAGAGCAAGGAGGTTGAAAGAGATTTTTCATGGTGATCTGCCACTGGGATCGCTTCAGAAACTAGAAAGGCTAACTTTACGGGATTGCCAGTCATTGGAAGAAATTTTTGCCTTGGAAGGATCGGGACATCATGTCAAAGAGATCAACTTCCTTTGTTTGACAAAGTTGGAACTTAAAGGTCTCCCGAGCTTCACTTTCCAGTCATTGGATCTAAACTGCTGTGCAAACTTGGAGTCACTTACCCTTGAAGACTGTGATTCTCTGGAATGTCTGATTGACCAAACTCTTAAGCAAGATACTCCACGAAGCGTCTTTCCTGTCTTGAATTATCTGGAAATCAATGGAGCAAGGAGGCTGAAAGAGATTTTTCATGGTGACCTGCCACTGGGGTCGCTTCAGAAACTAGAAAGGCTATTGTTACAGAATCTACCTGCATTGACGACTATTTGGACTATTGGAAGTCAATCTAGATGGTTGGGAGATCTGGCCGCTGTCTATGACATATCAATATGGGATTGCCAGTCATTGGAAGCCATTTTTGCGTTGGAAGGATCGGGACATCATGTCAAAGAGATCAACTTCCTTAGTTTGAGGCGGTTGAAACTTAAAGGTCTACCAAGCTTCACTGGAATGAGCAAAAGTACTTGTAAGGGGATGGAAAGGCAACTGGAAGTCAGCAGTCTCCATCACAATAGTTTGACCGTTGAACATTCACTTTTCTCTGACCCCAAGGTTGTCTTTCCCGTCTTGGAATCCCTGAACATTAGCCGTCTGGGCAACTTGAAAGAGATATGGAATAGCCGACTTTCACCCAACTCCTTCTCTGAATTAACAACACTCACTGTCAAGGATTGTGACAAACTATTACATTTGGTACCAACACAAATGCAAAATAGATTGCAGAGATTGGAGTACATAAAGGTAAGGAACTGTTCTTCACTGGAAGAGATTTTTGAAGTCGGAAGATTGACCGTCAATGAAGGGAATGCTTCAATTTCTCAGTCAGACAAAATACCTTCAAATATTTCCCAATCTGATCAAGGGATGCAAATAAATGATATCATGGATTTCAAACAATCTTGTCAAGGCTTTCAGAATTTAACCGTACTAGTAGTTAGATCTTGTGGCAGTTTGAGATACCTGCTCTCTCCTTCGATTGCCAGAGGTCTTGTCAAGCTCGGATATCTAGATATAAGATCTTGCGAGAATATCGAAGCAATAGTCGCAGCAGATGAGGGTGAAGAAACAGAGAATGAAAGCATGCTCCCTCAGCTATATTATTTGCATCTTGGGGATCTACCCAATCTTGGAAGCTTTTCGCAAGGCAAATATACTTTTGATTGGCCACGAGTGAGACGGATCAAAATTAAAAAATGCAACAAAATGAACAACTTTTGTTCAGGATCCCTCAGCATCCGAAGGGAAGTGAAGATAATTGTCCGTGATTCTGGTGAGAATCTTGAGCAGGAGCTGAATGATAGCAAGAAAGAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

2035

Amino Acids

229.95

Weight (kDa)

5.5

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 200 - 335 4.3e-10 NB-ARC domain
NB-ARC PF00931 359 - 517 4e-22 NB-ARC domain
LRR_14 PF23598 751 - 896 8.8e-06 Leucine-rich repeat region
LRR_8 PF13855 782 - 840 4e-07 Leucine rich repeat
LRR_RPS2 PF23247 1067 - 1178 3.1e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1169 - 1292 3.8e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1295 - 1407 4.3e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1409 - 1520 9.7e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1524 - 1631 1.3e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1608 - 1718 1.3e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1788 - 1939 1.8e-26 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1894 - 2003 5.6e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 541
Acc36I ACCTGC 6 cut(s) 541, 1588, 3288, 4998, 5050, 5760
Acc65I GGTACC 1 cut(s) 5485
AccB1I GGYRCC 2 cut(s) 478, 5485
AccB7I CCANNNNNTGG 9 cut(s) 309, 3448, 3790, 4132, 4363, 4474, 4705, 4816, 5137
AccI GTMKAC 3 cut(s) 228, 1777, 5224
AccII CGCG 1 cut(s) 430
AciI CCGC 6 cut(s) 428, 430, 2639, 3023, 5100, 5206
AclI AACGTT 1 cut(s) 372
AcoI YGGCCR 2 cut(s) 5097, 5954
AcuI CTGAAG 8 cut(s) 344, 2300, 3281, 3623, 3965, 4307, 4649, 4991
AdeI CACNNNGTG 2 cut(s) 2471, 2793
AflII CTTAAG 6 cut(s) 3188, 3530, 3872, 4214, 4556, 4898
AflIII ACRYGT 2 cut(s) 160, 254
AgeI ACCGGT 1 cut(s) 1624
AhdI GACNNNNNGTC 5 cut(s) 3716, 4058, 4400, 4742, 5174
AhlI ACTAGT 1 cut(s) 5719
AjnI CCWGG 5 cut(s) 460, 735, 1526, 1726, 2467
AjuI GAANNNNNNNTTGG 4 cut(s) 791, 823, 1478, 1510
AloI GAACNNNNNNTCC 4 cut(s) 502, 534, 2712, 2744
Alw21I GWGCWC 1 cut(s) 424
AlwNI CAGNNNCTG 2 cut(s) 1603, 6082
Ama87I CYCGRG 7 cut(s) 1416, 3065, 3427, 3769, 4111, 4453, 4795
AoxI GGCC 4 cut(s) 492, 2796, 5097, 5954
ApeKI GCWGC 6 cut(s) 294, 297, 945, 1175, 1579, 5837
AsiGI ACCGGT 1 cut(s) 1624
Asp700I GAANNNNTTC 4 cut(s) 1668, 1839, 2624, 5926
Asp718I GGTACC 1 cut(s) 5485
AspS9I GGNCC 5 cut(s) 328, 492, 1351, 2171, 2796
AsuC2I CCSGG 2 cut(s) 1417, 1418
AsuNHI GCTAGC 1 cut(s) 2650
AvaI CYCGRG 7 cut(s) 1416, 3065, 3427, 3769, 4111, 4453, 4795
AvaII GGWCC 3 cut(s) 328, 1351, 2171
AxyI CCTNAGG 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 1654
BaeI ACNNNNGTAYC 2 cut(s) 2348, 2381
BalI TGGCCA 1 cut(s) 5956
BamHI GGATCC 3 cut(s) 739, 1420, 6014
BanI GGYRCC 2 cut(s) 478, 5485
BanII GRGCYC 1 cut(s) 2552
BarI GAAGNNNNNNTAC 2 cut(s) 2859, 2891
BauI CACGAG 2 cut(s) 924, 5958
BbsI GAAGAC 2 cut(s) 2967, 4866
Bbv12I GWGCWC 1 cut(s) 424
BbvCI CCTCAGC 3 cut(s) 2656, 5880, 6020
BbvI GCAGC 6 cut(s) 281, 309, 932, 1162, 1566, 5849
BceAI ACGGC 4 cut(s) 612, 2006, 2298, 5364
BciT130I CCWGG 5 cut(s) 462, 737, 1528, 1728, 2469
BciVI GTATCC 3 cut(s) 160, 1333, 3019
BclI TGATCA 5 cut(s) 376, 1204, 1245, 2674, 5647
BcnI CCSGG 2 cut(s) 1417, 1418
BcuI ACTAGT 1 cut(s) 5719
BfmI CTRYAG 2 cut(s) 295, 1587
BfrI CTTAAG 6 cut(s) 3188, 3530, 3872, 4214, 4556, 4898
BfuAI ACCTGC 6 cut(s) 541, 1588, 3288, 4998, 5050, 5760
BfuI GTATCC 3 cut(s) 160, 1333, 3019
BglI GCCNNNNNGGC 1 cut(s) 5385
BglII AGATCT 8 cut(s) 106, 1195, 1279, 1387, 2934, 5092, 5729, 5807
BisI GCNGC 7 cut(s) 295, 298, 946, 1176, 1580, 5100, 5838
BlpI GCTNAGC 1 cut(s) 525
BlsI GCNGC 7 cut(s) 296, 299, 947, 1177, 1581, 5101, 5839
BmcAI AGTACT 2 cut(s) 2149, 5254
Bme1390I CCNGG 7 cut(s) 462, 737, 1417, 1418, 1528, 1728, 2469
Bme18I GGWCC 3 cut(s) 328, 1351, 2171
BmeRI GACNNNNNGTC 5 cut(s) 3716, 4058, 4400, 4742, 5174
BmeT110I CYCGRG 7 cut(s) 1416, 3065, 3427, 3769, 4111, 4453, 4795
BmgT120I GGNCC 5 cut(s) 328, 492, 1351, 2171, 2796
BmiI GGNNCC 9 cut(s) 366, 480, 493, 741, 1422, 2172, 2173, 5487, 6016
BmrFI CCNGG 7 cut(s) 462, 737, 1417, 1418, 1528, 1728, 2469
BmrI ACTGGG 6 cut(s) 2555, 3638, 3980, 4322, 4664, 5006
BmtI GCTAGC 1 cut(s) 2654
BmuI ACTGGG 6 cut(s) 2555, 3638, 3980, 4322, 4664, 5006
BpiI GAAGAC 2 cut(s) 2967, 4866
BplI GAGNNNNNCTC 6 cut(s) 2473, 2505, 3079, 3111, 3081, 3113
BpmI CTGGAG 4 cut(s) 1549, 1929, 2711, 2833
Bpu10I CCTNAGC 3 cut(s) 2656, 5880, 6020
Bpu1102I GCTNAGC 1 cut(s) 525
BpuEI CTTGAG 6 cut(s) 361, 1215, 2102, 2216, 3010, 6092
BpuMI CCSGG 2 cut(s) 1417, 1418
BsaAI YACGTR 2 cut(s) 833, 1924
BsaBI GATNNNNATC 1 cut(s) 1250
BsaI GGTCTC 7 cut(s) 2686, 3084, 3428, 3770, 4112, 4454, 4796
BsaWI WCCGGW 1 cut(s) 1624
Bse118I RCCGGY 1 cut(s) 1624
Bse21I CCTNAGG 1 cut(s) 505
Bse3DI GCAATG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 1250
BseBI CCWGG 5 cut(s) 462, 737, 1528, 1728, 2469
BseJI GATNNNNATC 1 cut(s) 1250
BseMI GCAATG 1 cut(s) 103
BseRI GAGGAG 4 cut(s) 414, 490, 493, 2106
BseSI GKGCMC 1 cut(s) 1654
BseXI GCAGC 6 cut(s) 281, 309, 932, 1162, 1566, 5849
BsgI GTGCAG 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 430
BshFI GGCC 4 cut(s) 494, 2798, 5099, 5956
BshNI GGYRCC 2 cut(s) 478, 5485
BshTI ACCGGT 1 cut(s) 1624
BsiHKAI GWGCWC 1 cut(s) 424
BsiHKCI CYCGRG 7 cut(s) 1416, 3065, 3427, 3769, 4111, 4453, 4795
BsiSI CCGG 2 cut(s) 1417, 1625
BsmBI CGTCTC 1 cut(s) 5959
BsmI GAATGC 2 cut(s) 2001, 5602
BsnI GGCC 4 cut(s) 494, 2798, 5099, 5956
Bso31I GGTCTC 7 cut(s) 2686, 3084, 3428, 3770, 4112, 4454, 4796
BsoBI CYCGRG 7 cut(s) 1416, 3065, 3427, 3769, 4111, 4453, 4795
Bsp1286I GDGCHC 3 cut(s) 424, 1654, 2552
Bsp1407I TGTACA 2 cut(s) 2444, 2505
Bsp1720I GCTNAGC 1 cut(s) 525
Bsp19I CCATGG 2 cut(s) 3696, 4038
BspACI CCGC 6 cut(s) 428, 430, 2639, 3023, 5100, 5206
BspANI GGCC 4 cut(s) 494, 2798, 5099, 5956
BspFNI CGCG 1 cut(s) 430
BspHI TCATGA 2 cut(s) 678, 2352
BspLI GGNNCC 9 cut(s) 366, 480, 493, 741, 1422, 2172, 2173, 5487, 6016
BspMAI CTGCAG 1 cut(s) 299
BspMI ACCTGC 6 cut(s) 541, 1588, 3288, 4998, 5050, 5760
BspOI GCTAGC 1 cut(s) 2654
BspT107I GGYRCC 2 cut(s) 478, 5485
BspTI CTTAAG 6 cut(s) 3188, 3530, 3872, 4214, 4556, 4898
BspTNI GGTCTC 7 cut(s) 2686, 3084, 3428, 3770, 4112, 4454, 4796
BsrDI GCAATG 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 1624
BsrGI TGTACA 2 cut(s) 2444, 2505
BssAI RCCGGY 1 cut(s) 1624
BssSI CACGAG 2 cut(s) 924, 5958
BssT1I CCWWGG 9 cut(s) 279, 1158, 2731, 3354, 3696, 4038, 4380, 4722, 5340
Bst2BI CACGAG 2 cut(s) 924, 5958
Bst2UI CCWGG 5 cut(s) 462, 737, 1528, 1728, 2469
Bst6I CTCTTC 5 cut(s) 265, 705, 1830, 2051, 5550
BstAFI CTTAAG 6 cut(s) 3188, 3530, 3872, 4214, 4556, 4898
BstAPI GCANNNNNTGC 3 cut(s) 3350, 3692, 4376
BstAUI TGTACA 2 cut(s) 2444, 2505
BstBAI YACGTR 2 cut(s) 833, 1924
BstC8I GCNNGC 5 cut(s) 496, 1711, 2202, 2652, 5873
BstDSI CCRYGG 3 cut(s) 428, 3696, 4038
BstEII GGTNACC 2 cut(s) 3275, 4985
BstENI CCTNNNNNAGG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 430
BstNI CCWGG 5 cut(s) 462, 737, 1528, 1728, 2469
BstNSI RCATGY 5 cut(s) 258, 294, 1745, 2512, 5875
BstPI GGTNACC 2 cut(s) 3275, 4985
BstSCI CCNGG 7 cut(s) 460, 735, 1415, 1416, 1526, 1726, 2467
BstSFI CTRYAG 2 cut(s) 295, 1587
BstSLI GKGCMC 1 cut(s) 1654
BstSNI TACGTA 1 cut(s) 1924
BstUI CGCG 1 cut(s) 430
BstV1I GCAGC 6 cut(s) 281, 309, 932, 1162, 1566, 5849
BstV2I GAAGAC 2 cut(s) 2967, 4866
BstXI CCANNNNNNTGG 1 cut(s) 2806
Bsu36I CCTNAGG 1 cut(s) 505
BsuI GTATCC 3 cut(s) 160, 1333, 3019
BsuRI GGCC 4 cut(s) 494, 2798, 5099, 5956
BtgI CCRYGG 3 cut(s) 428, 3696, 4038
BtgZI GCGATG 1 cut(s) 734
BveI ACCTGC 6 cut(s) 541, 1588, 3288, 4998, 5050, 5760
Cac8I GCNNGC 5 cut(s) 496, 1711, 2202, 2652, 5873
CaiI CAGNNNCTG 2 cut(s) 1603, 6082
CciI TCATGA 2 cut(s) 678, 2352
Cfr10I RCCGGY 1 cut(s) 1624
Cfr13I GGNCC 5 cut(s) 328, 492, 1351, 2171, 2796
Cfr42I CCGCGG 1 cut(s) 431
Cfr9I CCCGGG 1 cut(s) 1416
CseI GACGC 7 cut(s) 545, 1571, 3541, 3883, 4225, 4567, 4909
CsiI ACCWGGT 1 cut(s) 2467
CspAI ACCGGT 1 cut(s) 1624
DraI TTTAAA 3 cut(s) 1471, 1888, 2766
DraIII CACNNNGTG 2 cut(s) 2471, 2793
DriI GACNNNNNGTC 5 cut(s) 3716, 4058, 4400, 4742, 5174
EaeI YGGCCR 2 cut(s) 5097, 5954
Eam1104I CTCTTC 5 cut(s) 265, 705, 1830, 2051, 5550
Eam1105I GACNNNNNGTC 5 cut(s) 3716, 4058, 4400, 4742, 5174
EarI CTCTTC 5 cut(s) 265, 705, 1830, 2051, 5550
Eco105I TACGTA 1 cut(s) 1924
Eco130I CCWWGG 9 cut(s) 279, 1158, 2731, 3354, 3696, 4038, 4380, 4722, 5340
Eco24I GRGCYC 1 cut(s) 2552
Eco31I GGTCTC 7 cut(s) 2686, 3084, 3428, 3770, 4112, 4454, 4796
Eco32I GATATC 6 cut(s) 886, 934, 1465, 2738, 5671, 5795
Eco47I GGWCC 3 cut(s) 328, 1351, 2171
Eco57I CTGAAG 8 cut(s) 344, 2300, 3281, 3623, 3965, 4307, 4649, 4991
Eco81I CCTNAGG 1 cut(s) 505
Eco88I CYCGRG 7 cut(s) 1416, 3065, 3427, 3769, 4111, 4453, 4795
Eco91I GGTNACC 2 cut(s) 3275, 4985
EcoNI CCTNNNNNAGG 1 cut(s) 343
EcoO109I RGGNCCY 2 cut(s) 1351, 2171
EcoO65I GGTNACC 2 cut(s) 3275, 4985
EcoRI GAATTC 2 cut(s) 1404, 1850
EcoRII CCWGG 5 cut(s) 460, 735, 1526, 1726, 2467
EcoRV GATATC 6 cut(s) 886, 934, 1465, 2738, 5671, 5795
EcoT14I CCWWGG 9 cut(s) 279, 1158, 2731, 3354, 3696, 4038, 4380, 4722, 5340
EcoT22I ATGCAT 1 cut(s) 2001
EcoT38I GRGCYC 1 cut(s) 2552
ErhI CCWWGG 9 cut(s) 279, 1158, 2731, 3354, 3696, 4038, 4380, 4722, 5340
Esp3I CGTCTC 1 cut(s) 5959
FbaI TGATCA 5 cut(s) 376, 1204, 1245, 2674, 5647
FblI GTMKAC 3 cut(s) 228, 1777, 5224
Fnu4HI GCNGC 7 cut(s) 295, 298, 946, 1176, 1580, 5100, 5838
FriOI GRGCYC 1 cut(s) 2552
Fsp4HI GCNGC 7 cut(s) 295, 298, 946, 1176, 1580, 5100, 5838
GluI GCNGC 7 cut(s) 295, 298, 946, 1176, 1580, 5100, 5838
GsuI CTGGAG 4 cut(s) 1549, 1929, 2711, 2833
HaeIII GGCC 4 cut(s) 494, 2798, 5099, 5956
HapII CCGG 2 cut(s) 1417, 1625
HgaI GACGC 7 cut(s) 545, 1571, 3541, 3883, 4225, 4567, 4909
HincII GTYRAC 1 cut(s) 2611
HindII GTYRAC 1 cut(s) 2611
HindIII AAGCTT 4 cut(s) 2066, 2918, 5230, 5923
HpaII CCGG 2 cut(s) 1417, 1625
Hpy166II GTNNAC 9 cut(s) 45, 229, 1227, 1747, 1778, 2129, 2611, 3115, 5225
Hpy8I GTNNAC 9 cut(s) 45, 229, 1227, 1747, 1778, 2129, 2611, 3115, 5225
Hpy99I CGWCG 2 cut(s) 2319, 2783
HpyCH4IV ACGT 5 cut(s) 160, 372, 832, 1923, 2016
HpySE526I ACGT 5 cut(s) 160, 372, 832, 1923, 2016
KflI GGGWCCC 1 cut(s) 2171
KpnI GGTACC 1 cut(s) 5489
Ksp22I TGATCA 5 cut(s) 376, 1204, 1245, 2674, 5647
KspI CCGCGG 1 cut(s) 431
Lsp1109I GCAGC 6 cut(s) 281, 309, 932, 1162, 1566, 5849
MabI ACCWGGT 1 cut(s) 2467
MaeII ACGT 5 cut(s) 160, 372, 832, 1923, 2016
MfeI CAATTG 5 cut(s) 912, 1845, 2566, 2579, 2883
MhlI GDGCHC 3 cut(s) 424, 1654, 2552
MlsI TGGCCA 1 cut(s) 5956
MluNI TGGCCA 1 cut(s) 5956
Mox20I TGGCCA 1 cut(s) 5956
Mph1103I ATGCAT 1 cut(s) 2001
MroXI GAANNNNTTC 4 cut(s) 1668, 1839, 2624, 5926
MscI TGGCCA 1 cut(s) 5956
MslI CAYNNNNRTG 2 cut(s) 1948, 5240
Msp20I TGGCCA 1 cut(s) 5956
MspA1I CMGCKG 2 cut(s) 430, 5102
MspCI CTTAAG 6 cut(s) 3188, 3530, 3872, 4214, 4556, 4898
MspI CCGG 2 cut(s) 1417, 1625
MspR9I CCNGG 7 cut(s) 462, 737, 1417, 1418, 1528, 1728, 2469
MunI CAATTG 5 cut(s) 912, 1845, 2566, 2579, 2883
Mva1269I GAATGC 2 cut(s) 2001, 5602
MvaI CCWGG 5 cut(s) 462, 737, 1528, 1728, 2469
MvnI CGCG 1 cut(s) 430
NciI CCSGG 2 cut(s) 1417, 1418
NcoI CCATGG 2 cut(s) 3696, 4038
NheI GCTAGC 1 cut(s) 2650
NlaIV GGNNCC 9 cut(s) 366, 480, 493, 741, 1422, 2172, 2173, 5487, 6016
NsiI ATGCAT 1 cut(s) 2001
NspI RCATGY 5 cut(s) 258, 294, 1745, 2512, 5875
PaeI GCATGC 1 cut(s) 5875
PaeR7I CTCGAG 1 cut(s) 3065
PagI TCATGA 2 cut(s) 678, 2352
PaqCI CACCTGC 1 cut(s) 541
PciI ACATGT 1 cut(s) 254
PctI GAATGC 2 cut(s) 2001, 5602
PdmI GAANNNNTTC 4 cut(s) 1668, 1839, 2624, 5926
PflMI CCANNNNNTGG 9 cut(s) 309, 3448, 3790, 4132, 4363, 4474, 4705, 4816, 5137
PfoI TCCNGGA 1 cut(s) 1726
PinAI ACCGGT 1 cut(s) 1624
PkrI GCNGC 7 cut(s) 296, 299, 947, 1177, 1581, 5101, 5839
Ppu21I YACGTR 2 cut(s) 833, 1924
PpuMI RGGWCCY 2 cut(s) 1351, 2171
PscI ACATGT 1 cut(s) 254
Psp1406I AACGTT 1 cut(s) 372
Psp5II RGGWCCY 2 cut(s) 1351, 2171
Psp6I CCWGG 5 cut(s) 460, 735, 1526, 1726, 2467
PspEI GGTNACC 2 cut(s) 3275, 4985
PspGI CCWGG 5 cut(s) 460, 735, 1526, 1726, 2467
PspN4I GGNNCC 9 cut(s) 366, 480, 493, 741, 1422, 2172, 2173, 5487, 6016
PspPI GGNCC 5 cut(s) 328, 492, 1351, 2171, 2796
PspPPI RGGWCCY 2 cut(s) 1351, 2171
PspXI VCTCGAGB 1 cut(s) 3065
PstI CTGCAG 1 cut(s) 299
PstNI CAGNNNCTG 2 cut(s) 1603, 6082
RseI CAYNNNNRTG 2 cut(s) 1948, 5240
SacII CCGCGG 1 cut(s) 431
SatI GCNGC 7 cut(s) 295, 298, 946, 1176, 1580, 5100, 5838
Sau96I GGNCC 5 cut(s) 328, 492, 1351, 2171, 2796
ScaI AGTACT 2 cut(s) 2149, 5254
ScrFI CCNGG 7 cut(s) 462, 737, 1417, 1418, 1528, 1728, 2469
SduI GDGCHC 3 cut(s) 424, 1654, 2552
SexAI ACCWGGT 1 cut(s) 2467
SfcI CTRYAG 2 cut(s) 295, 1587
Sfr274I CTCGAG 1 cut(s) 3065
Sfr303I CCGCGG 1 cut(s) 431
SgrBI CCGCGG 1 cut(s) 431
SinI GGWCC 3 cut(s) 328, 1351, 2171
SlaI CTCGAG 1 cut(s) 3065
SmaI CCCGGG 1 cut(s) 1418
SmiMI CAYNNNNRTG 2 cut(s) 1948, 5240
SnaBI TACGTA 1 cut(s) 1924
SpeI ACTAGT 1 cut(s) 5719
SphI GCATGC 1 cut(s) 5875
SsiI CCGC 6 cut(s) 428, 430, 2639, 3023, 5100, 5206
SspI AATATT 3 cut(s) 1362, 2323, 5635
StyD4I CCNGG 7 cut(s) 460, 735, 1415, 1416, 1526, 1726, 2467
StyI CCWWGG 9 cut(s) 279, 1158, 2731, 3354, 3696, 4038, 4380, 4722, 5340
TaiI ACGT 5 cut(s) 163, 375, 835, 1926, 2019
TaqI TCGA 7 cut(s) 2214, 2480, 2724, 2758, 3066, 5765, 5823
TatI WGTACW 6 cut(s) 42, 2147, 2444, 2505, 5252, 5523
TauI GCSGC 1 cut(s) 5102
TseI GCWGC 6 cut(s) 294, 297, 945, 1175, 1579, 5837
TspGWI ACGGA 5 cut(s) 320, 1468, 1764, 5983, 6041
TspMI CCCGGG 1 cut(s) 1416
Van91I CCANNNNNTGG 9 cut(s) 309, 3448, 3790, 4132, 4363, 4474, 4705, 4816, 5137
Vha464I CTTAAG 6 cut(s) 3188, 3530, 3872, 4214, 4556, 4898
VpaK11BI GGWCC 3 cut(s) 328, 1351, 2171
XagI CCTNNNNNAGG 1 cut(s) 343
XbaI TCTAGA 5 cut(s) 1276, 2494, 3574, 5078, 5797
XceI RCATGY 5 cut(s) 258, 294, 1745, 2512, 5875
XcmI CCANNNNNNNNNTGG 1 cut(s) 5152
XhoI CTCGAG 1 cut(s) 3065
XmaI CCCGGG 1 cut(s) 1416
XmiI GTMKAC 3 cut(s) 228, 1777, 5224
XmnI GAANNNNTTC 4 cut(s) 1668, 1839, 2624, 5926
ZrmI AGTACT 2 cut(s) 2149, 5254
Zsp2I ATGCAT 1 cut(s) 2001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.