Rh1AG171900

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000203
Physical Location & Seq
Forward (+)
32967130 .. 32971725
4596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG171900.1

Sequence Viewer

Length: 345 bp
ATGGAAGCTTTGAAGGGGAATGAGATCAATCCGGTTGTCATATGCGGCATGGGAGGTATTGGGAAGACAACATTGATGGGGGAAGTTGTTAACAGAGCAAAGAAAGAGGGTCAGTTTGATGAGTATACAAAGGCAACTGTTAAAGAAACTCTTGACAAAAATCCTGACCTTTGTCTGATTCAAGATGAACTTGCTCGATATCTAGGTCTTCCACTTGAAGGAAAAGAAATAGATGCAAGAGCAAACAAGATACGTCAAAGATTATCTGCAGGTGCCAAGAAGGGTTACGGTTATGCTTCAGGAATAACAAAGAATCCGTTACAACATTTGTGCGGACGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

114

Amino Acids

12.45

Weight (kDa)

9.17

Isoelectric Point (pI)

16.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 4 - 88 1.6e-09 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 125
AciI CCGC 2 cut(s) 45, 333
AcuI CTGAAG 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 3 cut(s) 13, 182, 218
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
BanI GGYRCC 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 71, 200
BccI CCATC 1 cut(s) 70
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 274
BmsI GCATC 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 171
BpiI GAAGAC 2 cut(s) 71, 200
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 218
BshNI GGYRCC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 218
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 2 cut(s) 45, 333
BspLI GGNNCC 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 272
BssMI GATC 1 cut(s) 24
BssNAI GTATAC 1 cut(s) 126
Bst1107I GTATAC 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 139, 290
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstPAI GACNNNNGTC 1 cut(s) 171
BstSFI CTRYAG 1 cut(s) 267
BstV2I GAAGAC 2 cut(s) 71, 200
BstZ17I GTATAC 1 cut(s) 126
BveI ACCTGC 1 cut(s) 260
CviAII CATG 1 cut(s) 49
CviJI RGCY 1 cut(s) 8
CviKI_1 RGCY 1 cut(s) 8
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
Eco32I GATATC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 200
FaeI CATG 1 cut(s) 52
FaiI YATR 5 cut(s) 41, 43, 50, 126, 294
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 174, 206
FatI CATG 1 cut(s) 48
FauNDI CATATG 1 cut(s) 41
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 1 cut(s) 203
GluI GCNGC 1 cut(s) 46
HapII CCGG 1 cut(s) 32
Hin1II CATG 1 cut(s) 52
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 2 cut(s) 178, 313
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 91, 126
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 4 cut(s) 152, 164, 182, 300
Hpy8I GTNNAC 2 cut(s) 91, 126
HpyAV CCTTC 3 cut(s) 7, 212, 274
HpyCH4III ACNGT 2 cut(s) 139, 290
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 236, 269
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 1 cut(s) 52
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 4 cut(s) 45, 177, 255, 285
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 284, 318
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 2 cut(s) 76, 200
MnlI CCTC 2 cut(s) 47, 100
MseI TTAA 2 cut(s) 90, 141
MspI CCGG 1 cut(s) 32
NdeI CATATG 1 cut(s) 41
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 178, 313
PkrI GCNGC 1 cut(s) 47
PshAI GACNNNNGTC 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 271
SaqAI TTAA 2 cut(s) 90, 141
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 24
SetI ASST 6 cut(s) 10, 58, 171, 208, 256, 274
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 267
SsiI CCGC 2 cut(s) 45, 333
SspMI CTAG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 139, 290
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 196
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 2 cut(s) 178, 313
Tru1I TTAA 2 cut(s) 90, 141
Tru9I TTAA 2 cut(s) 90, 141
TspDTI ATGAA 1 cut(s) 201
TspGWI ACGGA 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.