Rmu_sc0002720.1_g000017

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002720.1
OG0000203
Physical Location & Seq
Forward (+)
66311 .. 66835
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002720.1_g000017.1.cds

Sequence Viewer

Length: 525 bp
atgtatttgcaggttgtctttcccgtcttggaagacctgaacattagccgtctgggcaactggaaagagatatggaatagccgactttcacccaactccttctctgaattaagaacactcactgtcgaggattgtgacaaactattacatctggtaccaacacaaatgcaaaagagattgcagagattggagaccataactgtagccaactgttcttcactggaagggatttttgaagtcggaagatcgactgtcaatgaagggatgcaaataaatgataccaaggatttcaaacaatcttgtcaaggctttcagaatttaaccgaactagtagttagatcttgtggcagtttgagataccttctcactccttcgattttcagaggtcttgtcaagctccgaagtctatctataagcactactacaaaaactgcatcacacaacggtggaaatctgttgtgtgatttggaccatgtctgtcgtctatctcggtgttgtgtgatgagcacactcacacaacggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

174

Amino Acids

19.7

Weight (kDa)

8.68

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 154
AccB1I GGYRCC 1 cut(s) 154
AcsI RAATTY 1 cut(s) 316
AfaI GTAC 1 cut(s) 156
AgsI TTSAA 2 cut(s) 236, 292
AhlI ACTAGT 1 cut(s) 328
AleI CACNNNNGTG 2 cut(s) 444, 520
AluBI AGCT 1 cut(s) 397
AluI AGCT 1 cut(s) 397
Alw21I GWGCWC 1 cut(s) 509
Alw26I GTCTC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 316
Asp718I GGTACC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 469
AsuHPI GGTGA 1 cut(s) 81
AvaII GGWCC 1 cut(s) 469
BanI GGYRCC 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 509
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 185
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 1 cut(s) 201
BglI GCCNNNNNGGC 1 cut(s) 54
BglII AGATCT 1 cut(s) 338
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 1 cut(s) 156
BmsI GCATC 2 cut(s) 255, 443
BpiI GAAGAC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 282
Bse1I ACTGG 2 cut(s) 65, 225
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 1 cut(s) 270
BseNI ACTGG 2 cut(s) 65, 225
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 2 cut(s) 245, 338
BspLI GGNNCC 1 cut(s) 156
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 65, 225
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 245, 338
BssT1I CCWWGG 1 cut(s) 282
Bst4CI ACNGT 6 cut(s) 124, 202, 212, 253, 446, 522
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 2 cut(s) 248, 341
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 245, 338
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 120, 218
Cfr13I GGNCC 1 cut(s) 469
Csp6I GTAC 1 cut(s) 155
CviAII CATG 1 cut(s) 473
CviJI RGCY 5 cut(s) 48, 81, 206, 309, 397
CviKI_1 RGCY 5 cut(s) 48, 81, 206, 309, 397
CviQI GTAC 1 cut(s) 155
DpnI GATC 2 cut(s) 247, 340
DpnII GATC 2 cut(s) 245, 338
Eco130I CCWWGG 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 1 cut(s) 476
FaiI YATR 4 cut(s) 73, 197, 413, 474
FatI CATG 1 cut(s) 472
FokI GGATG 1 cut(s) 277
FspBI CTAG 1 cut(s) 329
Hin1II CATG 1 cut(s) 476
HphI GGTGA 1 cut(s) 81
Hpy188I TCNGA 5 cut(s) 106, 242, 315, 383, 401
HpyAV CCTTC 5 cut(s) 109, 218, 254, 371, 381
HpyCH4III ACNGT 6 cut(s) 124, 202, 212, 253, 446, 522
HpyCH4V TGCA 5 cut(s) 10, 169, 181, 268, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 476
KpnI GGTACC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 245, 338
LmnI GCTCC 1 cut(s) 402
LpnPI CCDG 5 cut(s) 38, 46, 50, 137, 206
LweI GCATC 2 cut(s) 255, 443
MaeI CTAG 1 cut(s) 329
MaeIII GTNAC 1 cut(s) 134
MalI GATC 2 cut(s) 247, 340
MboI GATC 2 cut(s) 245, 338
MboII GAAGA 3 cut(s) 44, 207, 255
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 509
MluCI AATT 2 cut(s) 107, 316
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 2 cut(s) 121, 377
MseI TTAA 2 cut(s) 110, 320
MslI CAYNNNNRTG 2 cut(s) 444, 520
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 2 cut(s) 245, 338
NlaIII CATG 1 cut(s) 476
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 134
OliI CACNNNNGTG 2 cut(s) 444, 520
PflFI GACNNNGTC 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 469
PsuI RGATCY 1 cut(s) 338
PsyI GACNNNGTC 1 cut(s) 473
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
RseI CAYNNNNRTG 2 cut(s) 444, 520
SaqAI TTAA 2 cut(s) 110, 320
Sau3AI GATC 2 cut(s) 245, 338
Sau96I GGNCC 1 cut(s) 469
SduI GDGCHC 1 cut(s) 509
SetI ASST 5 cut(s) 15, 39, 363, 388, 399
SfaNI GCATC 2 cut(s) 255, 443
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 2 cut(s) 444, 520
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 2 cut(s) 107, 316
SspMI CTAG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 6 cut(s) 124, 202, 212, 253, 446, 522
TaqI TCGA 3 cut(s) 126, 248, 374
TasI AATT 2 cut(s) 107, 316
Tru1I TTAA 2 cut(s) 110, 320
Tru9I TTAA 2 cut(s) 110, 320
TscAI CASTG 2 cut(s) 127, 225
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 2 cut(s) 127, 225
Tth111I GACNNNGTC 1 cut(s) 473
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 1 cut(s) 316
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.