RLG00000005089

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000203
Physical Location & Seq
Forward (+)
64909277 .. 64910965
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005089

Sequence Viewer

Length: 906 bp
ATGGATTGGAAAACTGGGATACTTGCAGAGTTACTTTCCTTGTCCCATTTGACTACTTTAGAAGTTGTTCTGCCACCAGTTAATAAGCTTCTAACCAGTAATCTATTTAACAAGCTCGAAAGATTTAAGATCTTTATAGGATGGAAGCAGCATATACTTTGGGACTTGAAGCATGATGGCAACTACTTGAGAGTTCACGATCTTGACGGAAGCGCTGTTGTGGGTAGTGGAATCACTTTGTTGCTAAAGAAAACCAGCATTCTTGAGTTTAGAATGAAGAATTTAACAGAACCTCAAGCTCTGAATGTCTTAGATACGGTCTGTTTTGCAAAGATTAAGTCTCTTACACTTGAGGAGTGTGATGCTGTGGAGTATCTAATTGACACGACCCTTGTGAAACCTTCTACTCCACATCGCAACAACGGCATCTTTCCTGTTTTGAATTCATTGGAGATCAGTTATGCAAGTAGACTGAAAGAGATTTTTCATGGGGATGCTGCTGCTTTAACAATTTCTGAGTCAAGGAATCAATCTTGTCAAGCATTTCAGAATCTTAGAGAGATATCAATTTTTTCTTGTGAAAGTTTGAGAACTCTGCTCTCTCCCTCAATTGCCAGAGGTCTTGTGAAGCTCCAAAGACTAAAGATAAAAGACTGTGAGAAGATTGAAGAAATAGTAGCAGCAGCAGAGGGTGAAGAAACAGAGGATGACAACTTGTTCCCTCAGCTATGTACTTTGACTCTGGAGGAGCTACCAAATCTCAGACGCTTTTCGCAAGGCAGATATAATTTCAAATGGCCACTAGTGAAAGACAAAGGTCCTCAAATGCTACAATATGAAGAGGTTTTGTTTAGGATCCCTCAGCACACCAAAGGAAGTGAAAATAGATGTCTAAGGTGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

302

Amino Acids

34.34

Weight (kDa)

6.67

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 108 - 220 5.7e-14 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 897
AccI GTMKAC 1 cut(s) 469
AclWI GGATC 2 cut(s) 850, 863
AcoI YGGCCR 1 cut(s) 797
AcsI RAATTY 2 cut(s) 280, 442
AfaI GTAC 1 cut(s) 733
AfeI AGCGCT 1 cut(s) 214
AgsI TTSAA 4 cut(s) 169, 442, 668, 793
AhlI ACTAGT 1 cut(s) 802
AluBI AGCT 6 cut(s) 88, 115, 299, 631, 727, 751
AluI AGCT 6 cut(s) 88, 115, 299, 631, 727, 751
Alw26I GTCTC 1 cut(s) 345
AlwI GGATC 2 cut(s) 850, 863
Aor51HI AGCGCT 1 cut(s) 214
AoxI GGCC 1 cut(s) 797
ApeKI GCWGC 5 cut(s) 148, 497, 500, 680, 683
ApoI RAATTY 2 cut(s) 280, 442
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 818
AsuHPI GGTGA 1 cut(s) 704
AvaII GGWCC 1 cut(s) 818
BalI TGGCCA 1 cut(s) 799
BamHI GGATCC 1 cut(s) 855
BanI GGYRCC 1 cut(s) 897
BbvCI CCTCAGC 2 cut(s) 723, 861
BbvI GCAGC 5 cut(s) 160, 484, 487, 692, 695
BccI CCATC 2 cut(s) 135, 170
BceAI ACGGC 1 cut(s) 439
BciVI GTATCC 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 345
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 1 cut(s) 803
BfoI RGCGCY 1 cut(s) 216
BfuI GTATCC 1 cut(s) 12
BglII AGATCT 1 cut(s) 129
BisI GCNGC 5 cut(s) 149, 498, 501, 681, 684
BlsI GCNGC 5 cut(s) 150, 499, 502, 682, 685
Bme18I GGWCC 1 cut(s) 818
BmgT120I GGNCC 1 cut(s) 818
BmiI GGNNCC 2 cut(s) 857, 899
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 3 cut(s) 352, 435, 484
BmuI ACTGGG 1 cut(s) 24
BoxI GACNNNNGTC 1 cut(s) 816
BpmI CTGGAG 1 cut(s) 764
Bpu10I CCTNAGC 2 cut(s) 723, 861
BpuEI CTTGAG 4 cut(s) 208, 279, 284, 371
Bse1I ACTGG 4 cut(s) 19, 77, 96, 901
BseGI GGATG 3 cut(s) 146, 499, 712
BseMII CTCAG 4 cut(s) 507, 737, 775, 875
BseNI ACTGG 4 cut(s) 19, 77, 96, 901
BseRI GAGGAG 2 cut(s) 368, 761
BseXI GCAGC 5 cut(s) 160, 484, 487, 692, 695
BshFI GGCC 1 cut(s) 799
BshNI GGYRCC 1 cut(s) 897
BslFI GGGAC 2 cut(s) 28, 176
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 2 cut(s) 28, 176
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 1 cut(s) 799
Bsp143I GATC 4 cut(s) 129, 199, 453, 855
BspANI GGCC 1 cut(s) 799
BspCNI CTCAG 4 cut(s) 508, 736, 774, 874
BspLI GGNNCC 2 cut(s) 857, 899
BspPI GGATC 2 cut(s) 850, 863
BspT107I GGYRCC 1 cut(s) 897
BsrI ACTGG 4 cut(s) 19, 77, 96, 901
BssMI GATC 4 cut(s) 129, 199, 453, 855
Bst4CI ACNGT 2 cut(s) 319, 656
Bst6I CTCTTC 1 cut(s) 834
BstDEI CTNAG 7 cut(s) 310, 516, 554, 723, 761, 861, 893
BstF5I GGATG 3 cut(s) 146, 499, 712
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 4 cut(s) 132, 202, 456, 858
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 4 cut(s) 129, 199, 453, 855
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstPAI GACNNNNGTC 1 cut(s) 816
BstV1I GCAGC 5 cut(s) 160, 484, 487, 692, 695
BstX2I RGATCY 2 cut(s) 129, 855
BstYI RGATCY 2 cut(s) 129, 855
BsuI GTATCC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 799
BtgZI GCGATG 1 cut(s) 398
BtsCI GGATG 3 cut(s) 146, 499, 712
CfoI GCGC 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 818
CseI GACGC 1 cut(s) 774
Csp6I GTAC 1 cut(s) 732
CviAII CATG 2 cut(s) 173, 488
CviJI RGCY 7 cut(s) 88, 115, 299, 631, 727, 751, 799
CviKI_1 RGCY 7 cut(s) 88, 115, 299, 631, 727, 751, 799
CviQI GTAC 1 cut(s) 732
DdeI CTNAG 7 cut(s) 310, 516, 554, 723, 761, 861, 893
DpnI GATC 4 cut(s) 131, 201, 455, 857
DpnII GATC 4 cut(s) 129, 199, 453, 855
EaeI YGGCCR 1 cut(s) 797
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
Eco32I GATATC 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 818
Eco47III AGCGCT 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 818
EcoRI GAATTC 1 cut(s) 442
EcoRV GATATC 1 cut(s) 564
FaeI CATG 2 cut(s) 176, 491
FaiI YATR 9 cut(s) 137, 153, 155, 174, 462, 489, 730, 786, 837
FaqI GGGAC 2 cut(s) 28, 176
FatI CATG 2 cut(s) 172, 487
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 5 cut(s) 149, 498, 501, 681, 684
FokI GGATG 3 cut(s) 153, 506, 719
Fsp4HI GCNGC 5 cut(s) 149, 498, 501, 681, 684
FspBI CTAG 1 cut(s) 803
GlaI GCGC 1 cut(s) 214
GluI GCNGC 5 cut(s) 149, 498, 501, 681, 684
GsuI CTGGAG 1 cut(s) 764
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 1 cut(s) 799
HgaI GACGC 1 cut(s) 774
HhaI GCGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 176, 491
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 5 cut(s) 231, 518, 526, 550, 739
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 2 cut(s) 196, 470
Hpy188I TCNGA 4 cut(s) 303, 517, 549, 764
Hpy188III TCNNGA 4 cut(s) 197, 203, 263, 743
Hpy8I GTNNAC 2 cut(s) 196, 470
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 2 cut(s) 319, 656
HpyCH4V TGCA 3 cut(s) 26, 329, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 7 cut(s) 310, 516, 554, 723, 761, 861, 893
Hsp92II CATG 2 cut(s) 176, 491
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 4 cut(s) 129, 199, 453, 855
LmnI GCTCC 2 cut(s) 636, 748
LpnPI CCDG 6 cut(s) 90, 109, 268, 447, 628, 728
Lsp1109I GCAGC 5 cut(s) 160, 484, 487, 692, 695
LweI GCATC 3 cut(s) 352, 435, 484
MaeI CTAG 1 cut(s) 803
MaeIII GTNAC 1 cut(s) 30
MalI GATC 4 cut(s) 131, 201, 455, 857
MboI GATC 4 cut(s) 129, 199, 453, 855
MboII GAAGA 5 cut(s) 289, 673, 680, 707, 851
MfeI CAATTG 1 cut(s) 609
MflI RGATCY 2 cut(s) 129, 855
MlsI TGGCCA 1 cut(s) 799
MluCI AATT 7 cut(s) 280, 378, 442, 510, 567, 609, 787
MluNI TGGCCA 1 cut(s) 799
MlyI GAGTC 2 cut(s) 527, 733
Mox20I TGGCCA 1 cut(s) 799
MroXI GAANNNNTTC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 799
MseI TTAA 6 cut(s) 81, 108, 126, 284, 336, 506
MslI CAYNNNNRTG 1 cut(s) 492
Msp20I TGGCCA 1 cut(s) 799
MunI CAATTG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 423
NdeII GATC 4 cut(s) 129, 199, 453, 855
NlaIII CATG 2 cut(s) 176, 491
NlaIV GGNNCC 2 cut(s) 857, 899
PctI GAATGC 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 3 cut(s) 231, 526, 550
PkrI GCNGC 5 cut(s) 150, 499, 502, 682, 685
PleI GAGTC 2 cut(s) 526, 733
PpsI GAGTC 2 cut(s) 526, 733
PpuMI RGGWCCY 1 cut(s) 818
PshAI GACNNNNGTC 1 cut(s) 816
Psp5II RGGWCCY 1 cut(s) 818
PspN4I GGNNCC 2 cut(s) 857, 899
PspPI GGNCC 1 cut(s) 818
PspPPI RGGWCCY 1 cut(s) 818
PsuI RGATCY 2 cut(s) 129, 855
RsaI GTAC 1 cut(s) 733
RsaNI GTAC 1 cut(s) 732
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 6 cut(s) 81, 108, 126, 284, 336, 506
SatI GCNGC 5 cut(s) 149, 498, 501, 681, 684
Sau3AI GATC 4 cut(s) 129, 199, 453, 855
Sau96I GGNCC 1 cut(s) 818
SchI GAGTC 2 cut(s) 527, 733
SfaNI GCATC 3 cut(s) 352, 435, 484
SinI GGWCC 1 cut(s) 818
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 4 cut(s) 187, 263, 294, 350
SmoI CTYRAG 4 cut(s) 187, 263, 294, 350
SpeI ACTAGT 1 cut(s) 802
Sse9I AATT 7 cut(s) 280, 378, 442, 510, 567, 609, 787
SspMI CTAG 1 cut(s) 803
TaaI ACNGT 2 cut(s) 319, 656
TaqI TCGA 1 cut(s) 117
TasI AATT 7 cut(s) 280, 378, 442, 510, 567, 609, 787
TatI WGTACW 1 cut(s) 731
TfiI GAWTC 3 cut(s) 231, 526, 550
Tru1I TTAA 6 cut(s) 81, 108, 126, 284, 336, 506
Tru9I TTAA 6 cut(s) 81, 108, 126, 284, 336, 506
TseI GCWGC 5 cut(s) 148, 497, 500, 680, 683
TspDTI ATGAA 4 cut(s) 290, 435, 476, 852
TspGWI ACGGA 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 818
XapI RAATTY 2 cut(s) 280, 442
XmiI GTMKAC 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.