Rmu_sc0005210.1_g000001

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005210.1
OG0000203
Physical Location & Seq
Forward (+)
5461 .. 6926
1466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005210.1_g000001.1.cds

Sequence Viewer

Length: 1098 bp
atgcaagagattattgtagcatttgttgaaccattggcagaatggacggtgagacctatttgtcgacggttgagttatgtgtttcactacgacagcaacattgagcatctcaccagaaaggttcagtgccgtcattctttgggaaggaaagctaagaagatgactgatgaggtggataaactccttgctaatgaacccaggactatagcgcatcctgctcttcatccagaggtggaattccaacccacagaggatttattgcatgaaggtggcagctcctcagatacatcaaaccaagaacaagtacctgcatatgaaggaaaaaatattaattttgattcaagaagatcaaccattagagatgtgatggaagctctcaagaggaatcaattcaatccgattatcatatgcggcatgggaggcattgagaagacaacattgatggggcaaatttttgagaaagcgaaggaagagggtctgttcgatgagtatacaaaggcaaccgttaaggaatctcttgacaaagctcctgacgtgattcagattcaaggtgaacttgcagaatatctaggcaagcagatccttgaggacgaaaaagagagaggtcgaagagcaaaccttttgtgggaaatagggattccccctagttgtaaacttctggtcacatcatggcaacaagatctattcaaggacatggacagaagaaagaacttctcaattgatggttttccaaatagagatgcctggagtctatttaagaagatagcaggaagtgtcatcgaatctgatctcgagttgcgtgttgtagcagaaaaggttctggaggaatgtgctgggttgccaattgcaatttcaactactggaatggcactaaaaggtgaaagcattgcaatttggaagaatgcactaaaggaactagaaaaggctagcccagaaaaacaaagcgttgatataccaatcgaagatttggttgcagatgctcttgcaaactttggtctcacttcagatactatggtttggtgggactcgcccccggattttgttgcttctttttgcaatagagattttatggggcttcctaattttcgctttcggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

365

Amino Acids

41.43

Weight (kDa)

5.2

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 316
AccI GTMKAC 2 cut(s) 64, 491
AciI CCGC 1 cut(s) 411
AclWI GGATC 1 cut(s) 574
AcsI RAATTY 2 cut(s) 236, 450
AcuI CTGAAG 1 cut(s) 987
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 625
AgsI TTSAA 6 cut(s) 29, 342, 394, 548, 688, 855
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 2 cut(s) 197, 743
AjuI GAANNNNNNNTTGG 2 cut(s) 835, 867
AluBI AGCT 4 cut(s) 152, 276, 374, 527
AluI AGCT 4 cut(s) 152, 276, 374, 527
Alw26I GTCTC 2 cut(s) 46, 1001
AlwI GGATC 1 cut(s) 574
Ama87I CYCGRG 1 cut(s) 791
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 2 cut(s) 236, 450
AseI ATTAAT 1 cut(s) 330
Asp700I GAANNNNTTC 2 cut(s) 389, 816
AspLEI GCGC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 1034
AsuHPI GGTGA 4 cut(s) 61, 103, 563, 890
AsuNHI GCTAGC 1 cut(s) 926
AvaI CYCGRG 1 cut(s) 791
BaeI ACNNNNGTAYC 2 cut(s) 999, 1032
BbsI GAAGAC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 285
BccI CCATC 3 cut(s) 361, 436, 716
BceAI ACGGC 1 cut(s) 114
BciT130I CCWGG 2 cut(s) 199, 745
BcnI CCSGG 1 cut(s) 1034
BcoDI GTCTC 2 cut(s) 46, 1001
BfaI CTAG 4 cut(s) 569, 645, 917, 927
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 316
BglII AGATCT 1 cut(s) 679
BisI GCNGC 2 cut(s) 274, 412
BlsI GCNGC 2 cut(s) 275, 413
Bme1390I CCNGG 3 cut(s) 199, 745, 1034
BmeT110I CYCGRG 1 cut(s) 791
BmgBI CACGTC 1 cut(s) 535
BmrFI CCNGG 3 cut(s) 199, 745, 1034
BmsI GCATC 4 cut(s) 115, 220, 730, 967
BmtI GCTAGC 1 cut(s) 930
BpiI GAAGAC 1 cut(s) 437
BpmI CTGGAG 2 cut(s) 766, 842
BpuEI CTTGAG 2 cut(s) 362, 605
BpuMI CCSGG 1 cut(s) 1034
BsaI GGTCTC 2 cut(s) 46, 1001
BsaJI CCNNGG 2 cut(s) 197, 1032
Bsc4I CCNNNNNNNGG 1 cut(s) 625
Bse1I ACTGG 1 cut(s) 865
Bse3DI GCAATG 1 cut(s) 885
BseBI CCWGG 2 cut(s) 199, 745
BseDI CCNNGG 2 cut(s) 197, 1032
BseGI GGATG 2 cut(s) 211, 223
BseLI CCNNNNNNNGG 1 cut(s) 625
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 865
BseRI GAGGAG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 833
BsiHKCI CYCGRG 1 cut(s) 791
BsiSI CCGG 1 cut(s) 1034
BslFI GGGAC 1 cut(s) 1037
BslI CCNNNNNNNGG 1 cut(s) 625
BsmAI GTCTC 2 cut(s) 46, 1001
BsmFI GGGAC 1 cut(s) 1037
BsmI GAATGC 1 cut(s) 907
Bso31I GGTCTC 2 cut(s) 46, 1001
BsoBI CYCGRG 1 cut(s) 791
Bsp143I GATC 4 cut(s) 347, 579, 679, 787
BspACI CCGC 1 cut(s) 411
BspCNI CTCAG 1 cut(s) 293
BspMI ACCTGC 1 cut(s) 316
BspOI GCTAGC 1 cut(s) 930
BspPI GGATC 1 cut(s) 574
BspQI GCTCTTC 2 cut(s) 225, 604
BspTNI GGTCTC 2 cut(s) 46, 1001
BsrDI GCAATG 1 cut(s) 885
BsrI ACTGG 1 cut(s) 865
BssECI CCNNGG 2 cut(s) 197, 1032
BssMI GATC 4 cut(s) 347, 579, 679, 787
BssNAI GTATAC 1 cut(s) 492
Bst1107I GTATAC 1 cut(s) 492
Bst2UI CCWGG 2 cut(s) 199, 745
Bst4CI ACNGT 3 cut(s) 49, 69, 505
Bst6I CTCTTC 3 cut(s) 225, 465, 604
BstC8I GCNNGC 2 cut(s) 575, 928
BstDEI CTNAG 2 cut(s) 153, 280
BstF5I GGATG 2 cut(s) 211, 223
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 4 cut(s) 350, 582, 682, 790
BstMAI GTCTC 2 cut(s) 46, 1001
BstMBI GATC 4 cut(s) 347, 579, 679, 787
BstMWI GCNNNNNNNGC 2 cut(s) 215, 420
BstNI CCWGG 2 cut(s) 199, 745
BstSCI CCNGG 3 cut(s) 197, 743, 1032
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 285
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 2 cut(s) 579, 679
BstYI RGATCY 2 cut(s) 579, 679
BstZ17I GTATAC 1 cut(s) 492
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 2 cut(s) 211, 223
BtsIMutI CAGTG 1 cut(s) 131
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 575, 928
CfoI GCGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 305
CviAII CATG 4 cut(s) 263, 415, 669, 694
CviJI RGCY 7 cut(s) 152, 276, 374, 527, 926, 930, 1075
CviKI_1 RGCY 7 cut(s) 152, 276, 374, 527, 926, 930, 1075
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 2 cut(s) 153, 280
DpnI GATC 4 cut(s) 349, 581, 681, 789
DpnII GATC 4 cut(s) 347, 579, 679, 787
DrdI GACNNNNNNGTC 1 cut(s) 60
DseDI GACNNNNNNGTC 1 cut(s) 60
Eam1104I CTCTTC 3 cut(s) 225, 465, 604
EarI CTCTTC 3 cut(s) 225, 465, 604
Eco31I GGTCTC 2 cut(s) 46, 1001
Eco57I CTGAAG 1 cut(s) 987
Eco88I CYCGRG 1 cut(s) 791
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 197, 743
FaeI CATG 4 cut(s) 266, 418, 672, 697
FalI AAGNNNNNCTT 2 cut(s) 540, 572
FaqI GGGAC 1 cut(s) 1037
FatI CATG 4 cut(s) 262, 414, 668, 693
FauNDI CATATG 2 cut(s) 313, 407
FblI GTMKAC 2 cut(s) 64, 491
Fnu4HI GCNGC 2 cut(s) 274, 412
FokI GGATG 2 cut(s) 198, 210
Fsp4HI GCNGC 2 cut(s) 274, 412
FspBI CTAG 4 cut(s) 569, 645, 917, 927
GlaI GCGC 1 cut(s) 210
GluI GCNGC 2 cut(s) 274, 412
GsaI CCCAGC 1 cut(s) 837
GsuI CTGGAG 2 cut(s) 766, 842
HapII CCGG 1 cut(s) 1034
HhaI GCGC 1 cut(s) 211
Hin1II CATG 4 cut(s) 266, 418, 672, 697
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HinfI GANTC 9 cut(s) 338, 385, 512, 538, 544, 637, 748, 782, 1025
HpaII CCGG 1 cut(s) 1034
HphI GGTGA 4 cut(s) 61, 103, 563, 890
Hpy166II GTNNAC 4 cut(s) 65, 492, 554, 653
Hpy188I TCNGA 5 cut(s) 283, 399, 543, 787, 1006
Hpy188III TCNNGA 7 cut(s) 227, 342, 379, 518, 530, 791, 821
Hpy8I GTNNAC 4 cut(s) 65, 492, 554, 653
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 4 cut(s) 138, 260, 311, 460
HpyCH4III ACNGT 3 cut(s) 49, 69, 505
HpyCH4IV ACGT 1 cut(s) 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 420
HpyF3I CTNAG 2 cut(s) 153, 280
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 4 cut(s) 266, 418, 672, 697
HspAI GCGC 1 cut(s) 209
Kzo9I GATC 4 cut(s) 347, 579, 679, 787
LguI GCTCTTC 2 cut(s) 225, 604
LmnI GCTCC 2 cut(s) 281, 532
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 4 cut(s) 115, 220, 730, 967
MaeI CTAG 4 cut(s) 569, 645, 917, 927
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 1 cut(s) 661
MalI GATC 4 cut(s) 349, 581, 681, 789
MboI GATC 4 cut(s) 347, 579, 679, 787
MfeI CAATTG 2 cut(s) 717, 843
MflI RGATCY 2 cut(s) 579, 679
MluCI AATT 9 cut(s) 236, 331, 389, 450, 717, 843, 849, 891, 1081
MlyI GAGTC 2 cut(s) 757, 1019
MmeI TCCRAC 1 cut(s) 265
MroXI GAANNNNTTC 2 cut(s) 389, 816
MseI TTAA 3 cut(s) 330, 507, 756
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 1 cut(s) 1034
MspR9I CCNGG 3 cut(s) 199, 745, 1034
MunI CAATTG 2 cut(s) 717, 843
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 2 cut(s) 199, 745
MwoI GCNNNNNNNGC 2 cut(s) 215, 420
NciI CCSGG 1 cut(s) 1034
NdeI CATATG 2 cut(s) 313, 407
NdeII GATC 4 cut(s) 347, 579, 679, 787
NheI GCTAGC 1 cut(s) 926
NlaIII CATG 4 cut(s) 266, 418, 672, 697
NmuCI GTSAC 1 cut(s) 661
PaeR7I CTCGAG 1 cut(s) 791
PciSI GCTCTTC 2 cut(s) 225, 604
PctI GAATGC 1 cut(s) 907
PdmI GAANNNNTTC 2 cut(s) 389, 816
PfeI GAWTC 7 cut(s) 338, 385, 512, 538, 544, 637, 782
PkrI GCNGC 2 cut(s) 275, 413
PleI GAGTC 2 cut(s) 756, 1019
PpsI GAGTC 2 cut(s) 756, 1019
PshBI ATTAAT 1 cut(s) 330
Psp6I CCWGG 2 cut(s) 197, 743
PspFI CCCAGC 1 cut(s) 833
PspGI CCWGG 2 cut(s) 197, 743
PsuI RGATCY 2 cut(s) 579, 679
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 267
SalI GTCGAC 1 cut(s) 63
SapI GCTCTTC 2 cut(s) 225, 604
SaqAI TTAA 3 cut(s) 330, 507, 756
SatI GCNGC 2 cut(s) 274, 412
Sau3AI GATC 4 cut(s) 347, 579, 679, 787
SchI GAGTC 2 cut(s) 757, 1019
ScrFI CCNGG 3 cut(s) 199, 745, 1034
SfaNI GCATC 4 cut(s) 115, 220, 730, 967
SfcI CTRYAG 1 cut(s) 204
Sfr274I CTCGAG 1 cut(s) 791
SlaI CTCGAG 1 cut(s) 791
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 3 cut(s) 377, 584, 791
SmoI CTYRAG 3 cut(s) 377, 584, 791
Sse9I AATT 9 cut(s) 236, 331, 389, 450, 717, 843, 849, 891, 1081
SsiI CCGC 1 cut(s) 411
SspI AATATT 1 cut(s) 328
SspMI CTAG 4 cut(s) 569, 645, 917, 927
StyD4I CCNGG 3 cut(s) 197, 743, 1032
TaaI ACNGT 3 cut(s) 49, 69, 505
TaiI ACGT 1 cut(s) 537
TaqI TCGA 6 cut(s) 64, 483, 607, 780, 792, 960
TasI AATT 9 cut(s) 236, 331, 389, 450, 717, 843, 849, 891, 1081
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 7 cut(s) 338, 385, 512, 538, 544, 637, 782
Tru1I TTAA 3 cut(s) 330, 507, 756
Tru9I TTAA 3 cut(s) 330, 507, 756
TscAI CASTG 1 cut(s) 131
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 4 cut(s) 207, 212, 279, 330
TspRI CASTG 1 cut(s) 131
VspI ATTAAT 1 cut(s) 330
XapI RAATTY 2 cut(s) 236, 450
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
XhoI CTCGAG 1 cut(s) 791
XmiI GTMKAC 2 cut(s) 64, 491
XmnI GAANNNNTTC 2 cut(s) 389, 816
XspI CTAG 4 cut(s) 569, 645, 917, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.