Rh4DG142300

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000203
Physical Location & Seq
Reverse (-)
28174846 .. 28197250
22405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG142300.1

Sequence Viewer

Length: 4260 bp
ATGGAAAAAATCTGCTTTTCAGTTCTTGGAAAAGTCGCAGAGTACGCAGTAGCACCAGTTCTGCGACAGTTTAGCTATCTGATTCACTGTGAGAGCAACATCGATAATCTCACCAGCCAGGCTGGGAGGCTGGCCGACAAAAGAGATGGAATACAGCTAGATGTGGATGCGGCGACCAGAAACTTAGAGACTATTGCTCCTGAAGTTCAGTCCTGGCTGCGTGATGTTAACAATACCATACGGGACAACGAGACGCGTTTTAAGGAAGAAACTGTAGCAAAGGCAAAATGCTGTAATGGATGGTTTCCAAATTTGAAGTATCGTCATTCCTTGAGTAGGAAAGCTAAGAAGATGACTGTGGTTGTTGATAAGCTCCTTGGAGACGGGAGATTCGCAGTCATTTCTCACCCAGCTCCTCCCCCAGAGATATTTCCATTTCCAAACAAAAAACATTCCGAGTCTGTTGATAAGGCTCTGGCCAAGCCCCATGAAGGGGCAAGCTCCTCAGGAACCTCCAACCCTGCTCCTCCATCACTTATGAAACTATCTGAGAATTTGGAATACAGATTACCTTATACGGAAGAGGTCGTGAATGCTTTGCATAATGATGATATCAACATGATTGGCATTTGCGGGACAATCAAAGGAGGAGATACGATGACAGCAAAAGAATTCATCCAGAGAGTAAAACACAAAGGTATATTTGAGGAGGTTGTGATGGCAATTGTGTCCCATGATCCAGACTTGAAGCGGATACAAGTTGAAATTGGAGATATGCTAGGGCTGAATTTGGAAAATATGAGTTTGATTGAAGGAGCAGAGATGCTTCATGCTAGAATGTCTAGCGATACAGAGAGGTTCCTTGTTGTATTGGCTGATGTTTGGAAAATACTTGATTTGGAAGCAGTTGGAATCCCTCATGGTGAAAGTAACCAAGGATGCAAGATCATATTTTTGTCAAGACTGCCAAATGTATTTAGTGAGTTGAGAACTCAGAGAATGGGAGATCTTAAGGTTTTAGGCATGAGGAGCACAGTTGTTTTGCCAATACTGCCATCGCTTCCACTTTTAAGAAACCTTCAAACGTTGTGTCTGGAGCATTGCAATTTTAACAACGATCATGTCAAGATACTCAACAGTGTCCTTGGAAAGCTACGGACACTGATGATACTCAGCTTTCGTGGTTCTTGCATCAAAGAATTACCTGATGAACTTAAAAATTTGTCGAAGCTAAGGTTGCTAGATTTGACAGGATGTATTGGTCTTGAGTTGATTTCACCAGGTGTCATTTCTAGCTTAACCCAACTAGAGGAATTATACATGTGGAATAGCTTTGACAAATGGGTGGTCCTAAGATATGAACATGTCTCAAAAACCCAACTGATGCGAGAGAATCCACATCCAACGCCAGAGGAGTGGGTGAACAACTTTGAGTCAACTCGTTTTGAGAAACATAGGAACGTAAACACTAATGCAGAACTTTCAGAGCTACTTTCCTTGAGCTGTTTGACTAGTTTAGAAACTGCTCTTCCACCAACTAAAACTATGCAAAGCAGTGTGGCATTTCGTAAGCTTGAAAGATTTAAAATCTCTATAGGATTCATGGATGAGGAAAGAAGATTGGATGTAAGCCCTTCTGAGAACTACTTGAGACTTCATGATCTTGATGGAAACTCTCTTGTCGGAAGTACAATCTCTGTGTTACTGAAGAAAACCAACACACTAGATCTGAAAATGAAAAATCTCAAGGATGCTCTCAATTTCTTAGATGGAGACTGTTTTGTAAACTTGAAGTCTCTAACACTGCAAGATTGTGAGGCTATGGAATATCTCATTGACATGACGGATATGGTTCCAATTGCACGTAATGCAGTGCTTCCGGTCTTAGATACGCTGAATATCCAAAGTGCAGATAGGATGAAGGAGATATGTCATGGTCAGCTTCCAATGGGGTCATTTGAAAAGCTAATCCGGATATCTTTAAGCAATCTGTCTCAATTGACACATGTATGGAAGATAGATACTCAGTTTGAATGCCTGGGAAATCTAAGATGTGTCGTTGTGAGAGCCTGTTTATCTTTGAAGTTTGTCTTCCTGTTGTCTACTGGTAATGATCTTATGCAACTTGAAGAACTAGAGATTACATCTTGCCCGTCCTTGGAAGAGATTTTTACCTTGGAACGATCAGGATATCAGATCAAGTGCCTGAATTTGATTCGATTGAGTCTTATAAATCTAAGGTTTTTTAAGATAAGCAAAAACGCATGCACGATGAGCTTCCCTCAACTAATCACCTTGGAGCTCAGAGAACTACCAGAACTCATCAGTCTCTATCCGAGTCATTTGGCTTCAAAACACAGCTCTAATGCCACTAATGTTCTATTTTACCCCAAGGTTAAACCTTTTTGCGAGCTACGGTATATGGTGGTGAGTAGCTGTAACAATCTACTTGGTGTTTTCTCATCCAGTGTGGTGCAAAACTTACAGAATCTTGAACAACTTGAAGTAAGGTCTTGTGACTCACTGGAAACAGTATTTGAGCTTGAAGGTTTAGAAATAAAAGAAGAGGATGGTGTTACTGCAACACTATTGTCTTGCTTGGAAAAAATGGAGTTGTATAAGCTACCCATGTTGGCATACTTGTGGAAGCCACCTCAAAACATTCTGGCATTTCAAAACTTAACAATGCTCCAAGTTTTCCAGTGCAACAGATTGGAATATGTGTTCCCGCTCTTCATACTGGAAGGTCTAGTGAAACTAGAAGCCATGTTTGTCAGAGATTGCCCTGGGATAGCAGACATCTTTGCAAAAACTGAAGAACATGGCGATGAAGAGAAAACAAATGAAATTGTTATTCCTCAACTAAAAACTCTCCATTTTACCGATTTACTTAGACTCAAAAGATTTTGTCCTGGTTCATGCACTGTTGACTGCCCATCATTGAGAACGCTGGTGCTCACCGACTGCGGTGACCTGGAGACATTTGTTCCACCGGTCGTATCCACAGGAAGTGACCCGATCTACCTTTTTGGTGAACAGGTTGACTTTCCAGTTTTGGAGACACTAGAACTTCGTTACATGTGCCACTTCAAAGAGATATGGAAGAACAAACTTCAACCCCACTCCTTCTGTGAATTAAGAGATCTAAACGTGTCCATTTGTACGGAATTAATGCATTTGGTGCCAATGTTTATGCAAAACAGGTTGCCGAAACTAGAGAAGTTACATGTCAGTGACTGCAGGTCACTAGAAGGGATTTTTGAATTGAGAAAAATATCTACTGATGAAGGGGAAGCTGTAACCATTTCACAGTCAGGGGAAACACCTTCTATTTCCCAACCTGAACGAACAATAAACCAGATGGATTACAGACTAACCAAAGGCTTTCCAAATTTGACATCAATAAAGATTTCTGGTTGTAACAATTTGAGATATCTGCTTTCTCTCTCCATTGCCATAGGTCTGGTGAAGCTCACAAATCTATCCATAGATCACTGCCAGAAGATGGAAGAAATCATAGCAGCAGATGGCAAGGAAACAGAGGACACGGTTGTTTTCCCATTCCTGGAGACACTAGAAATTCACTCCATGGACAACTTCAAGGAGATATTCAGCAAACAAATTTCACACAATTCCTTCTGTGAGCTAAGAGTAAGAGTACTCAGGGTGTCCTTTTGTAACAAATTAGAGTGTTTGTTTCCAATTTATATGCAAAATGGATTGCAGAAACTGGAGAGCTTAACTGTGAAACGTTGTTCATTCCTAGTAGAGATTTTTGAATGTAGTCGGTCGACTGGCAATGAGCATGCTGTCGTAGTATCCCAATCTGTAGGGATACAGAGTCATCAAGGCTTTCAGAGTCTAACTTCTATAGAAATCACAGAATGTGAAAGACTGAGAATTCTGCTCTCACCTCGCATTGCCAGAGGTCTCAGGAATCTCAAAACTATAAATATATACTGTTGCGGGCGGTTGAAAGAAATAGTAACAAAGGAGGTTGAAGAAACAGATATGAGAAACATTCTCCCTCAGCTAACTTTTCTGAAACTTGACCTTCTAATTAATCTCATTAGTTTTTCCCAAGGAAAATATATTTTAGAATGGCCTTTAATGAAAGAGATACAGATCGAGCAGTGCCCCAAGATGAAAAAATTCTGTTTTGGGTCCCTCAGCACACCAAGGGAAGTGAAATTAATTTTCAATGAAGGCACAGGTGTGAATCTTCGGCGGGAGCTCAAAAACAGTAGGAAATTAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1419

Amino Acids

161.25

Weight (kDa)

6.03

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 194 - 330 3e-13 NB-ARC domain
LRR_RPS2 PF23247 575 - 717 3.4e-17 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 801 - 928 1.8e-32 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1020 - 1167 6.3e-25 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1116 - 1252 5.3e-21 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1190 - 1270 2.8e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 1281 - 1384 3.7e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2231
Acc36I ACCTGC 1 cut(s) 3231
AccB1I GGYRCC 1 cut(s) 3181
AccB7I CCANNNNNTGG 1 cut(s) 3505
AccBSI CCGCTC 1 cut(s) 2731
AccI GTMKAC 2 cut(s) 2102, 3791
AccII CGCG 1 cut(s) 256
AccIII TCCGGA 1 cut(s) 1971
AciI CCGC 8 cut(s) 170, 633, 751, 2729, 2967, 3966, 3970, 4228
AclI AACGTT 2 cut(s) 1085, 3751
AclWI GGATC 1 cut(s) 731
AcoI YGGCCR 2 cut(s) 132, 477
AcuI CTGAAG 3 cut(s) 222, 1727, 2835
AdeI CACNNNGTG 1 cut(s) 1283
AfaI GTAC 4 cut(s) 44, 1690, 3163, 3660
AfiI CCNNNNNNNGG 8 cut(s) 336, 491, 492, 493, 1309, 2158, 3505, 3565
AflII CTTAAG 1 cut(s) 1010
AflIII ACRYGT 7 cut(s) 254, 1320, 1363, 2005, 3078, 3150, 3226
AgeI ACCGGT 1 cut(s) 2992
AhdI GACNNNNNGTC 1 cut(s) 3241
AhlI ACTAGT 1 cut(s) 1511
AjnI CCWGG 8 cut(s) 117, 212, 1279, 2037, 2785, 2911, 2973, 3564
AleI CACNNNNGTG 1 cut(s) 4214
AloI GAACNNNNNNTCC 2 cut(s) 2708, 2740
Alw21I GWGCWC 4 cut(s) 1034, 2304, 2958, 4236
AlwI GGATC 1 cut(s) 731
AlwNI CAGNNNCTG 2 cut(s) 3237, 3730
Aor13HI TCCGGA 1 cut(s) 1971
AoxI GGCC 3 cut(s) 132, 477, 4103
ApeKI GCWGC 2 cut(s) 217, 3521
ArsI GACNNNNNNTTYG 6 cut(s) 374, 406, 1075, 1107, 1332, 1364
AseI ATTAAT 3 cut(s) 3170, 4062, 4193
AsiGI ACCGGT 1 cut(s) 2992
Asp700I GAANNNNTTC 1 cut(s) 4151
AspS9I GGNCC 2 cut(s) 1348, 4164
AvaII GGWCC 2 cut(s) 1348, 4164
AxyI CCTNAGG 1 cut(s) 505
BaeGI GKGCMC 1 cut(s) 4139
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 3181
BanII GRGCYC 2 cut(s) 2304, 4236
BbsI GAAGAC 1 cut(s) 2083
Bbv12I GWGCWC 4 cut(s) 1034, 2304, 2958, 4236
BbvCI CCTCAGC 2 cut(s) 4029, 4169
BbvI GCAGC 2 cut(s) 204, 3533
BciT130I CCWGG 8 cut(s) 119, 214, 1281, 2039, 2787, 2913, 2975, 3566
BciVI GTATCC 4 cut(s) 747, 3010, 3828, 3829
BcuI ACTAGT 1 cut(s) 1511
BfmI CTRYAG 5 cut(s) 273, 1593, 3238, 3828, 3870
BfrI CTTAAG 1 cut(s) 1010
BfuAI ACCTGC 1 cut(s) 3231
BfuI GTATCC 4 cut(s) 747, 3010, 3828, 3829
BglII AGATCT 3 cut(s) 1006, 1726, 3142
BisI GCNGC 3 cut(s) 171, 218, 3522
BlsI GCNGC 3 cut(s) 172, 219, 3523
BmcAI AGTACT 1 cut(s) 3660
Bme1390I CCNGG 8 cut(s) 119, 214, 1281, 2039, 2787, 2913, 2975, 3566
Bme18I GGWCC 2 cut(s) 1348, 4164
BmeRI GACNNNNNGTC 1 cut(s) 3241
BmgT120I GGNCC 2 cut(s) 1348, 4164
BmiI GGNNCC 6 cut(s) 511, 860, 1854, 3183, 4165, 4166
BmrFI CCNGG 8 cut(s) 119, 214, 1281, 2039, 2787, 2913, 2975, 3566
BmsI GCATC 6 cut(s) 157, 813, 929, 1200, 1374, 1741
BpiI GAAGAC 1 cut(s) 2083
BplI GAGNNNNNCTC 2 cut(s) 2266, 2298
BpmI CTGGAG 4 cut(s) 1115, 2996, 3587, 3752
Bpu10I CCTNAGC 3 cut(s) 1232, 4029, 4169
BpuEI CTTGAG 5 cut(s) 352, 1286, 1519, 1669, 1730
Bsa29I ATCGAT 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 1865
BsaBI GATNNNNATC 1 cut(s) 4124
BsaI GGTCTC 1 cut(s) 3935
BsaWI WCCGGW 3 cut(s) 1879, 1971, 2992
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 8 cut(s) 336, 491, 492, 493, 1309, 2158, 3505, 3565
Bse118I RCCGGY 1 cut(s) 2992
Bse1I ACTGG 9 cut(s) 56, 2110, 2466, 2529, 2701, 2745, 3050, 3735, 3799
Bse21I CCTNAGG 1 cut(s) 505
Bse3DI GCAATG 4 cut(s) 1099, 3450, 3805, 3918
Bse8I GATNNNNATC 1 cut(s) 4124
BseAI TCCGGA 1 cut(s) 1971
BseBI CCWGG 8 cut(s) 119, 214, 1281, 2039, 2787, 2913, 2975, 3566
BseCI ATCGAT 1 cut(s) 102
BseJI GATNNNNATC 1 cut(s) 4124
BseLI CCNNNNNNNGG 8 cut(s) 336, 491, 492, 493, 1309, 2158, 3505, 3565
BseMI GCAATG 4 cut(s) 1099, 3450, 3805, 3918
BseNI ACTGG 9 cut(s) 56, 2110, 2466, 2529, 2701, 2745, 3050, 3735, 3799
BseRI GAGGAG 7 cut(s) 405, 493, 516, 663, 722, 1042, 1427
BseSI GKGCMC 1 cut(s) 4139
BseXI GCAGC 2 cut(s) 204, 3533
BseYI CCCAGC 2 cut(s) 122, 409
BsgI GTGCAG 1 cut(s) 1929
Bsh1236I CGCG 1 cut(s) 256
Bsh1285I CGRYCG 2 cut(s) 2997, 3791
BshFI GGCC 3 cut(s) 134, 479, 4105
BshNI GGYRCC 1 cut(s) 3181
BshTI ACCGGT 1 cut(s) 2992
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 2 cut(s) 2997, 3791
BsiHKAI GWGCWC 4 cut(s) 1034, 2304, 2958, 4236
BsiSI CCGG 3 cut(s) 1880, 1972, 2993
BslFI GGGAC 4 cut(s) 257, 649, 715, 4150
BslI CCNNNNNNNGG 8 cut(s) 336, 491, 492, 493, 1309, 2158, 3505, 3565
BsmBI CGTCTC 2 cut(s) 245, 375
BsmFI GGGAC 4 cut(s) 257, 649, 715, 4150
BsmI GAATGC 2 cut(s) 598, 2039
BsnI GGCC 3 cut(s) 134, 479, 4105
Bso31I GGTCTC 1 cut(s) 3935
Bsp1286I GDGCHC 5 cut(s) 1034, 2304, 2958, 4139, 4236
Bsp13I TCCGGA 1 cut(s) 1971
Bsp19I CCATGG 1 cut(s) 3588
BspACI CCGC 8 cut(s) 170, 633, 751, 2729, 2967, 3966, 3970, 4228
BspANI GGCC 3 cut(s) 134, 479, 4105
BspDI ATCGAT 1 cut(s) 102
BspEI TCCGGA 1 cut(s) 1971
BspFNI CGCG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 1657
BspLI GGNNCC 6 cut(s) 511, 860, 1854, 3183, 4165, 4166
BspMAI CTGCAG 1 cut(s) 3242
BspMI ACCTGC 1 cut(s) 3231
BspPI GGATC 1 cut(s) 731
BspQI GCTCTTC 2 cut(s) 1533, 2738
BspT107I GGYRCC 1 cut(s) 3181
BspTI CTTAAG 1 cut(s) 1010
BspTNI GGTCTC 1 cut(s) 3935
BsrBI CCGCTC 1 cut(s) 2731
BsrDI GCAATG 4 cut(s) 1099, 3450, 3805, 3918
BsrFI RCCGGY 1 cut(s) 2992
BsrI ACTGG 9 cut(s) 56, 2110, 2466, 2529, 2701, 2745, 3050, 3735, 3799
BssAI RCCGGY 1 cut(s) 2992
Bst2UI CCWGG 8 cut(s) 119, 214, 1281, 2039, 2787, 2913, 2975, 3566
Bst6I CTCTTC 6 cut(s) 576, 1533, 2157, 2559, 2738, 2826
BstAFI CTTAAG 1 cut(s) 1010
BstAPI GCANNNNNTGC 2 cut(s) 1868, 3181
BstBAI YACGTR 1 cut(s) 1865
BstC8I GCNNGC 6 cut(s) 132, 499, 2266, 2411, 3807, 3968
BstDSI CCRYGG 1 cut(s) 3588
BstEII GGTNACC 1 cut(s) 2969
BstENI CCTNNNNNAGG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 256
BstMCI CGRYCG 2 cut(s) 2997, 3791
BstMWI GCNNNNNNNGC 7 cut(s) 44, 1029, 1051, 1237, 1868, 2274, 3181
BstNI CCWGG 8 cut(s) 119, 214, 1281, 2039, 2787, 2913, 2975, 3566
BstNSI RCATGY 7 cut(s) 1324, 1367, 2009, 2268, 3082, 3230, 3809
BstPI GGTNACC 1 cut(s) 2969
BstSCI CCNGG 8 cut(s) 117, 212, 1279, 2037, 2785, 2911, 2973, 3564
BstSFI CTRYAG 5 cut(s) 273, 1593, 3238, 3828, 3870
BstSLI GKGCMC 1 cut(s) 4139
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 2 cut(s) 204, 3533
BstV2I GAAGAC 1 cut(s) 2083
BstX2I RGATCY 3 cut(s) 1006, 1726, 3142
BstXI CCANNNNNNTGG 2 cut(s) 1416, 3463
BstYI RGATCY 3 cut(s) 1006, 1726, 3142
Bsu15I ATCGAT 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 505
BsuI GTATCC 4 cut(s) 747, 3010, 3828, 3829
BsuRI GGCC 3 cut(s) 134, 479, 4105
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 3588
BtgZI GCGATG 2 cut(s) 1041, 2841
BtsI GCAGTG 5 cut(s) 1561, 1802, 1878, 3493, 4139
BveI ACCTGC 1 cut(s) 3231
Cac8I GCNNGC 6 cut(s) 132, 499, 2266, 2411, 3807, 3968
CaiI CAGNNNCTG 2 cut(s) 3237, 3730
CciI TCATGA 1 cut(s) 1657
Cfr10I RCCGGY 1 cut(s) 2992
Cfr13I GGNCC 2 cut(s) 1348, 4164
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 1279
Csp6I GTAC 4 cut(s) 43, 1689, 3162, 3659
CspAI ACCGGT 1 cut(s) 2992
CviQI GTAC 4 cut(s) 43, 1689, 3162, 3659
DraI TTTAAA 1 cut(s) 1585
DraIII CACNNNGTG 1 cut(s) 1283
DriI GACNNNNNGTC 1 cut(s) 3241
EaeI YGGCCR 2 cut(s) 132, 477
Eam1104I CTCTTC 6 cut(s) 576, 1533, 2157, 2559, 2738, 2826
Eam1105I GACNNNNNGTC 1 cut(s) 3241
EarI CTCTTC 6 cut(s) 576, 1533, 2157, 2559, 2738, 2826
Ecl136II GAGCTC 2 cut(s) 2302, 4234
Eco24I GRGCYC 2 cut(s) 2304, 4236
Eco31I GGTCTC 1 cut(s) 3935
Eco32I GATATC 4 cut(s) 613, 1977, 2192, 3434
Eco47I GGWCC 2 cut(s) 1348, 4164
Eco53kI GAGCTC 2 cut(s) 2302, 4234
Eco57I CTGAAG 3 cut(s) 222, 1727, 2835
Eco81I CCTNAGG 1 cut(s) 505
Eco91I GGTNACC 1 cut(s) 2969
EcoICRI GAGCTC 2 cut(s) 2302, 4234
EcoNI CCTNNNNNAGG 1 cut(s) 334
EcoO109I RGGNCCY 1 cut(s) 4164
EcoO65I GGTNACC 1 cut(s) 2969
EcoRI GAATTC 2 cut(s) 671, 3900
EcoRII CCWGG 8 cut(s) 117, 212, 1279, 2037, 2785, 2911, 2973, 3564
EcoRV GATATC 4 cut(s) 613, 1977, 2192, 3434
EcoT22I ATGCAT 1 cut(s) 3177
EcoT38I GRGCYC 2 cut(s) 2304, 4236
Esp3I CGTCTC 2 cut(s) 245, 375
FalI AAGNNNNNCTT 2 cut(s) 2075, 2107
FaqI GGGAC 4 cut(s) 257, 649, 715, 4150
FauI CCCGC 4 cut(s) 626, 2736, 3959, 4221
FblI GTMKAC 2 cut(s) 2102, 3791
Fnu4HI GCNGC 3 cut(s) 171, 218, 3522
FriOI GRGCYC 2 cut(s) 2304, 4236
Fsp4HI GCNGC 3 cut(s) 171, 218, 3522
GluI GCNGC 3 cut(s) 171, 218, 3522
GsaI CCCAGC 2 cut(s) 126, 413
GsuI CTGGAG 4 cut(s) 1115, 2996, 3587, 3752
HaeIII GGCC 3 cut(s) 134, 479, 4105
HapII CCGG 3 cut(s) 1880, 1972, 2993
HgaI GACGC 1 cut(s) 262
HincII GTYRAC 5 cut(s) 229, 1437, 2929, 3043, 3792
HindII GTYRAC 5 cut(s) 229, 1437, 2929, 3043, 3792
HindIII AAGCTT 1 cut(s) 1571
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 3 cut(s) 1880, 1972, 2993
HpyCH4IV ACGT 5 cut(s) 1085, 1461, 1864, 3150, 3751
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 1029, 1051, 1237, 1868, 2274, 3181
HpySE526I ACGT 5 cut(s) 1085, 1461, 1864, 3150, 3751
KflI GGGWCCC 1 cut(s) 4164
Kpn2I TCCGGA 1 cut(s) 1971
KspAI GTTAAC 1 cut(s) 229
LguI GCTCTTC 2 cut(s) 1533, 2738
Lsp1109I GCAGC 2 cut(s) 204, 3533
LweI GCATC 6 cut(s) 157, 813, 929, 1200, 1374, 1741
MabI ACCWGGT 1 cut(s) 1279
MaeII ACGT 5 cut(s) 1085, 1461, 1864, 3150, 3751
MbiI CCGCTC 1 cut(s) 2731
MfeI CAATTG 3 cut(s) 723, 1857, 1997
MflI RGATCY 3 cut(s) 1006, 1726, 3142
MhlI GDGCHC 5 cut(s) 1034, 2304, 2958, 4139, 4236
MlsI TGGCCA 1 cut(s) 479
MluI ACGCGT 1 cut(s) 254
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 8 cut(s) 467, 1442, 2233, 2347, 2513, 2889, 3850, 3868
MmeI TCCRAC 4 cut(s) 540, 889, 1427, 1663
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 3177
MroI TCCGGA 1 cut(s) 1971
MroXI GAANNNNTTC 1 cut(s) 4151
MscI TGGCCA 1 cut(s) 479
MslI CAYNNNNRTG 7 cut(s) 606, 1838, 2008, 2641, 2826, 3231, 4214
Msp20I TGGCCA 1 cut(s) 479
MspCI CTTAAG 1 cut(s) 1010
MspI CCGG 3 cut(s) 1880, 1972, 2993
MspR9I CCNGG 8 cut(s) 119, 214, 1281, 2039, 2787, 2913, 2975, 3566
MunI CAATTG 3 cut(s) 723, 1857, 1997
Mva1269I GAATGC 2 cut(s) 598, 2039
MvaI CCWGG 8 cut(s) 119, 214, 1281, 2039, 2787, 2913, 2975, 3566
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 7 cut(s) 44, 1029, 1051, 1237, 1868, 2274, 3181
NcoI CCATGG 1 cut(s) 3588
NlaIV GGNNCC 6 cut(s) 511, 860, 1854, 3183, 4165, 4166
NmuCI GTSAC 5 cut(s) 2516, 2969, 3011, 3233, 3243
NsiI ATGCAT 1 cut(s) 3177
NspI RCATGY 7 cut(s) 1324, 1367, 2009, 2268, 3082, 3230, 3809
OliI CACNNNNGTG 1 cut(s) 4214
PaeI GCATGC 2 cut(s) 2268, 3809
PagI TCATGA 1 cut(s) 1657
PasI CCCWGGG 1 cut(s) 2786
PciI ACATGT 5 cut(s) 1320, 1363, 2005, 3078, 3226
PciSI GCTCTTC 2 cut(s) 1533, 2738
PctI GAATGC 2 cut(s) 598, 2039
PdmI GAANNNNTTC 1 cut(s) 4151
PfeI GAWTC 9 cut(s) 82, 390, 912, 1393, 1599, 2215, 2488, 3937, 4219
PflMI CCANNNNNTGG 1 cut(s) 3505
PfoI TCCNGGA 1 cut(s) 3564
PinAI ACCGGT 1 cut(s) 2992
PkrI GCNGC 3 cut(s) 172, 219, 3523
PleI GAGTC 8 cut(s) 466, 1441, 2232, 2346, 2513, 2889, 3849, 3867
PpsI GAGTC 8 cut(s) 466, 1441, 2232, 2346, 2513, 2889, 3849, 3867
Ppu21I YACGTR 1 cut(s) 1865
PpuMI RGGWCCY 1 cut(s) 4164
PscI ACATGT 5 cut(s) 1320, 1363, 2005, 3078, 3226
PshBI ATTAAT 3 cut(s) 3170, 4062, 4193
PsiI TTATAA 1 cut(s) 2231
Psp124BI GAGCTC 2 cut(s) 2304, 4236
Psp1406I AACGTT 2 cut(s) 1085, 3751
Psp5II RGGWCCY 1 cut(s) 4164
Psp6I CCWGG 8 cut(s) 117, 212, 1279, 2037, 2785, 2911, 2973, 3564
PspEI GGTNACC 1 cut(s) 2969
PspFI CCCAGC 2 cut(s) 122, 409
PspGI CCWGG 8 cut(s) 117, 212, 1279, 2037, 2785, 2911, 2973, 3564
PspN4I GGNNCC 6 cut(s) 511, 860, 1854, 3183, 4165, 4166
PspPI GGNCC 2 cut(s) 1348, 4164
PspPPI RGGWCCY 1 cut(s) 4164
PsrI GAACNNNNNNTAC 2 cut(s) 42, 74
PstI CTGCAG 1 cut(s) 3242
PstNI CAGNNNCTG 2 cut(s) 3237, 3730
PsuI RGATCY 3 cut(s) 1006, 1726, 3142
RsaI GTAC 4 cut(s) 44, 1690, 3163, 3660
RsaNI GTAC 4 cut(s) 43, 1689, 3162, 3659
RseI CAYNNNNRTG 7 cut(s) 606, 1838, 2008, 2641, 2826, 3231, 4214
SacI GAGCTC 2 cut(s) 2304, 4236
SalI GTCGAC 1 cut(s) 3790
SapI GCTCTTC 2 cut(s) 1533, 2738
SatI GCNGC 3 cut(s) 171, 218, 3522
Sau96I GGNCC 2 cut(s) 1348, 4164
ScaI AGTACT 1 cut(s) 3660
SchI GAGTC 8 cut(s) 467, 1442, 2233, 2347, 2513, 2889, 3850, 3868
ScrFI CCNGG 8 cut(s) 119, 214, 1281, 2039, 2787, 2913, 2975, 3566
SduI GDGCHC 5 cut(s) 1034, 2304, 2958, 4139, 4236
SexAI ACCWGGT 1 cut(s) 1279
SfaNI GCATC 6 cut(s) 157, 813, 929, 1200, 1374, 1741
SfcI CTRYAG 5 cut(s) 273, 1593, 3238, 3828, 3870
SinI GGWCC 2 cut(s) 1348, 4164
SmiMI CAYNNNNRTG 7 cut(s) 606, 1838, 2008, 2641, 2826, 3231, 4214
SmlI CTYRAG 6 cut(s) 331, 1010, 1265, 1498, 1648, 1745
SmoI CTYRAG 6 cut(s) 331, 1010, 1265, 1498, 1648, 1745
SpeI ACTAGT 1 cut(s) 1511
SphI GCATGC 2 cut(s) 2268, 3809
SsiI CCGC 8 cut(s) 170, 633, 751, 2729, 2967, 3966, 3970, 4228
SstI GAGCTC 2 cut(s) 2304, 4236
StyD4I CCNGG 8 cut(s) 117, 212, 1279, 2037, 2785, 2911, 2973, 3564
TaiI ACGT 5 cut(s) 1088, 1464, 1867, 3153, 3754
TaqI TCGA 5 cut(s) 102, 1226, 2218, 3791, 4128
TaqII GACCGA 1 cut(s) 3777
TatI WGTACW 2 cut(s) 1688, 3658
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 9 cut(s) 82, 390, 912, 1393, 1599, 2215, 2488, 3937, 4219
TseFI GTSAC 5 cut(s) 2516, 2969, 3011, 3233, 3243
TseI GCWGC 2 cut(s) 217, 3521
Tsp45I GTSAC 5 cut(s) 2516, 2969, 3011, 3233, 3243
TspGWI ACGGA 4 cut(s) 593, 1171, 1859, 3179
Van91I CCANNNNNTGG 1 cut(s) 3505
Vha464I CTTAAG 1 cut(s) 1010
VpaK11BI GGWCC 2 cut(s) 1348, 4164
VspI ATTAAT 3 cut(s) 3170, 4062, 4193
XagI CCTNNNNNAGG 1 cut(s) 334
XceI RCATGY 7 cut(s) 1324, 1367, 2009, 2268, 3082, 3230, 3809
XmiI GTMKAC 2 cut(s) 2102, 3791
XmnI GAANNNNTTC 1 cut(s) 4151
ZrmI AGTACT 1 cut(s) 3660
Zsp2I ATGCAT 1 cut(s) 3177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.