Rmu_co8167864.1_g000001

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8167864.1
OG0000203
Physical Location & Seq
Forward (+)
190 .. 670
481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8167864.1_g000001.1.cds

Sequence Viewer

Length: 481 bp
atggcagaaatatgtatttcagttgtggaaaaattagcagagtgcacagtctcacctattctgcgacagtttggttatctgattaactacaagagcaatgttgaagatctcaccgtgaaggttacaactctgacttccaaaagagatggggtacaacaacgtgtggaagcagcaaacagaaacttggaggctattctgcccgaagttcagaactggttggaccaagtaaaccagaccatacaagaaaaggagacccgttttgaaaaaggaagattatcgaaggcaacaacatgctgcagctccaatgggtggtgtcgaaatctgaaggtccgccattccttgagtaggaaagcaacgaagatggctccaaaggttgatgtcctccttacagaaggagatttccccataatatcatgtcctgctcctccgcggaagattgaatatccagccatacaatattttgaggattccaccgaggccc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

160

Amino Acids

18.09

Weight (kDa)

8.2

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 309
AccII CGCG 1 cut(s) 430
AciI CCGC 3 cut(s) 331, 428, 430
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 309, 345
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 3 cut(s) 104, 263, 440
AluBI AGCT 1 cut(s) 300
AluI AGCT 1 cut(s) 300
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 2 cut(s) 55, 245
Alw44I GTGCAC 1 cut(s) 43
AoxI GGCC 1 cut(s) 477
ApaLI GTGCAC 1 cut(s) 43
ApeKI GCWGC 3 cut(s) 170, 294, 297
AspS9I GGNCC 3 cut(s) 220, 328, 478
AsuHPI GGTGA 2 cut(s) 45, 103
AvaII GGWCC 2 cut(s) 220, 328
BaeGI GKGCMC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 3 cut(s) 182, 281, 309
BccI CCATC 2 cut(s) 140, 355
BcoDI GTCTC 2 cut(s) 55, 245
BfmI CTRYAG 1 cut(s) 295
BglII AGATCT 1 cut(s) 106
BisI GCNGC 3 cut(s) 171, 295, 298
BlsI GCNGC 3 cut(s) 172, 296, 299
Bme18I GGWCC 2 cut(s) 220, 328
BmgT120I GGNCC 3 cut(s) 220, 328, 478
BmiI GGNNCC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 2 cut(s) 428, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 309, 345
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 428, 474
BseLI CCNNNNNNNGG 2 cut(s) 309, 345
BseMI GCAATG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 414
BseSI GKGCMC 1 cut(s) 47
BseXI GCAGC 3 cut(s) 182, 281, 309
Bsh1236I CGCG 1 cut(s) 430
BshFI GGCC 1 cut(s) 479
BsiHKAI GWGCWC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 309, 345
BsmAI GTCTC 2 cut(s) 55, 245
BsnI GGCC 1 cut(s) 479
Bso31I GGTCTC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 3 cut(s) 331, 428, 430
BspANI GGCC 1 cut(s) 479
BspFNI CGCG 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 366
BspMAI CTGCAG 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 103
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 428, 474
BssMI GATC 1 cut(s) 106
Bst4CI ACNGT 3 cut(s) 49, 69, 115
BstDSI CCRYGG 1 cut(s) 428
BstENI CCTNNNNNAGG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 430
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 2 cut(s) 55, 245
BstMBI GATC 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 295
BstSLI GKGCMC 1 cut(s) 47
BstUI CGCG 1 cut(s) 430
BstV1I GCAGC 3 cut(s) 182, 281, 309
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 479
BtgI CCRYGG 1 cut(s) 428
Cfr13I GGNCC 3 cut(s) 220, 328, 478
Cfr42I CCGCGG 1 cut(s) 431
Csp6I GTAC 1 cut(s) 152
CviAII CATG 2 cut(s) 291, 414
CviJI RGCY 5 cut(s) 191, 300, 365, 449, 479
CviKI_1 RGCY 5 cut(s) 191, 300, 365, 449, 479
CviQI GTAC 1 cut(s) 152
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EciI GGCGGA 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 220, 328
Eco57I CTGAAG 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 343
FaeI CATG 2 cut(s) 294, 417
FaiI YATR 6 cut(s) 13, 239, 292, 407, 415, 452
FatI CATG 2 cut(s) 290, 413
Fnu4HI GCNGC 3 cut(s) 171, 295, 298
Fsp4HI GCNGC 3 cut(s) 171, 295, 298
GluI GCNGC 3 cut(s) 171, 295, 298
HaeIII GGCC 1 cut(s) 479
Hin1II CATG 2 cut(s) 294, 417
HinfI GANTC 1 cut(s) 467
HphI GGTGA 2 cut(s) 45, 103
Hpy166II GTNNAC 2 cut(s) 45, 229
Hpy188I TCNGA 4 cut(s) 81, 132, 210, 324
Hpy8I GTNNAC 2 cut(s) 45, 229
HpyAV CCTTC 4 cut(s) 112, 274, 319, 386
HpyCH4III ACNGT 3 cut(s) 49, 69, 115
HpyCH4IV ACGT 1 cut(s) 160
HpyCH4V TGCA 2 cut(s) 45, 297
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 2 cut(s) 294, 417
KspI CCGCGG 1 cut(s) 431
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 3 cut(s) 305, 370, 427
LpnPI CCDG 4 cut(s) 199, 245, 432, 459
Lsp1109I GCAGC 3 cut(s) 182, 281, 309
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 121
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 4 cut(s) 116, 282, 370, 445
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 5 cut(s) 181, 392, 435, 457, 469
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 430
MvnI CGCG 1 cut(s) 430
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 294, 417
NlaIV GGNNCC 1 cut(s) 366
NspI RCATGY 1 cut(s) 294
PfeI GAWTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 309
PkrI GCNGC 3 cut(s) 172, 296, 299
PspN4I GGNNCC 1 cut(s) 366
PspPI GGNCC 3 cut(s) 220, 328, 478
PstI CTGCAG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacII CCGCGG 1 cut(s) 431
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 3 cut(s) 171, 295, 298
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 3 cut(s) 220, 328, 478
SduI GDGCHC 1 cut(s) 47
SetI ASST 6 cut(s) 58, 123, 163, 302, 330, 375
SfcI CTRYAG 1 cut(s) 295
Sfr303I CCGCGG 1 cut(s) 431
SgrBI CCGCGG 1 cut(s) 431
SinI GGWCC 2 cut(s) 220, 328
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
Sse9I AATT 1 cut(s) 32
SsiI CCGC 3 cut(s) 331, 428, 430
SspI AATATT 1 cut(s) 458
TaaI ACNGT 3 cut(s) 49, 69, 115
TaiI ACGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 278, 316
TasI AATT 1 cut(s) 32
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 3 cut(s) 170, 294, 297
Van91I CCANNNNNTGG 1 cut(s) 309
VneI GTGCAC 1 cut(s) 43
VpaK11BI GGWCC 2 cut(s) 220, 328
XagI CCTNNNNNAGG 1 cut(s) 343
XceI RCATGY 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.