FvH4_6g02790

E3 ubiquitin protein ligase DRIP2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000203
Physical Location & Seq
Reverse (-)
1581048 .. 1588379
7332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02790.t1

Sequence Viewer

Length: 2730 bp
ATGGACCCAAAGTCATCTCCTCCCAATTCCAACACCACCGTTCCGGTGACCCAGGCACTGTGGGAAGCGAGGTCCCACATGTTCGAGAGGCTCTTGGACCCACCAGTCGACGCTCCTCCGCAGAGCGAATTGCTGAACAGGACTCCATCACAGAGCAGGACTACAATTTCTCTACACTGCTATGCTGTTGATACCACAACAAGGCCGCTCTTACTGGTCACTGCATCTGTTGACAAAATTGTCCTGAAGAAGCCAATTAGTGTTGACATTGACCTGGAAATTGTTGGTGCTGTCATTTGGGTGGGGCGGTCATCTATTGAGATCCAACTAGAAGTTACTCAATCCACAAAAGTTTGCAGGAAATGCATACTCGAGAAGCTGTCGGACAAGGAGGGAGATTGTTCTCCAGTATGCGAAATCGATTTGGGATGTATGGCGGTCAAAAAACTTAGGCCGGACCATAATTTGCAAGATATCAGGGCCAAGATATTTCCTCTTAAAAGACGTAAAATTAATGCACCCGAATCACCTTCAGTTTCATTCCCGGTGAAAAGGAAGGAGAGCTCATTATCATCATTAGTAGTCAGCACCCGCAAAGTTCCAGTGCAGGCAGGCTTGACTGGAAAGAGACCAAGAGCCTATCTGAGTTCTCTAGCAACTTATTTAAGTTCTAGGAAGTCAGGTCTTTCTCCTAAGGAAACCCTGGATTCTTCCATGCCTGAGAATTCCTATGAGCAGAAGCCTAAGAAAGATGATGTTGAAGTAATGGAAGGCAAAGCTGATCTGTGGACACCCTTAAACTGTCTTGTAGAGGCTGCTAACCGAACCAAGTCCTCTAAGTTAAATCCCCAAGGGCAGTTGCCTGCCAAATCAGAGCCACTCAATGCCCTTGATAGTATTTCTGAACTTTATATGCCTGAAAGTAACACAGACATAGAATTGCCAGATGCTCTAGAAAGTCATTTACATGTCCCTAAGGTCAAAATCAAGGAGCCTGAGAACAGTACTAGAGGAAAAAAGAACATTAATGCGGCAGCAGTCACAGGATCCATGAAACGGAAGAGGTTTCATGCAGGTAATCGTAATAGGGGAGCTCCATCGGGGGAGTCAGGTGATTCAACTCAAGATGTACGTGGGGCTAAGCATAGCAGAAGAAATAATCCTATTTGGTTCTTGTTGGTTGCAGCTGAAAACTGGAAAGGAGAGGCCTCCTTGCCCCAGATATCATCATGTTACCTGAGAATAAAGGATGGTAAAATGCCTGTAACATTTATTCAGATGTACCTTGTGATGAAGAAACTTGAACTTACCAGTAAAGCTGAGGTGAGTATTTTTTTTATTCTTTCGTTTATTCCATCAAAAGCAAAATCGAGTGGACAAATGGCAGATATTATCACTACAGTTGTTGGAAAGTTAGCAGAGTACACAGTCGCACCTCTCCTGCGACAGTTTGGTTATCTGATTAACTACAAGAGCAATGTTGAACATCTCACCGAGAAGGTGACAACTCTGACTGCTACAAGAGACGGGGTACAGTTACGTGTGGATGGAGCAAAGAGGAACTTGGAGGTTATTCTTCCCGAAGTTCAGAACTGGTTGGAACGAGTGCAGCAGACCATACAAGAAAAGGAGACATGTTTTGAAGACGGAAGAGTAGCCAAGGCAACAACATGCTGCCGCTCCAATGGATGGTGTCCAAATCTGAAGGATCGTCATTCCTTGAGTAGGAAAGCAGCGAAGATGGCTGTAAAGCTTGATAAGCTTATTACAGATGGAAATTTCACCACAATATCATGTCCTGCTCCTCCGCGTAAGCTTGAGTACCCAGCTATGCAATATTATGAGGATTCCACTCAGGCCCTGGTGAAGCCACATGAAGGGTCAAGCTCCTCCTCTGGAACATCCAAACCTGCTGAAGTACATGTGCCTATGGATCTCTCTGAGCGTCTGGAATACAGGCTGCCTTATACAAAGGATCTCTTGACGGCTCTGCAAGATGACAAGATCAGCATGATTGGCATTTCTGGGACATTCAGAGAGATAGATACGGTAACAACTAAAGAGTTCACCAAAAGAATGAAACACAGAAATCTCTTTGACGAGGTTGTGATGGCAGTTGTGTCTCAGCATCCAGACTTGAAACGAATACAAGATGAGATTGCAGAAATGCTGGACCTGAAATTAGAGGAGAATGGGAGTTTGGTGGAACGGGCAGAGAGGCTACGAGCTCTTTTACTGGCATCAGATTCTAAGAGGATTCTTGTAATACTGACTGATGTCTGTGGAATACTTGATTTGGATGCAATTGGAATTCCTCATCTTGATATCATGAAAAGCTGCAAGATCATGATGATTTCAGAACTACAAGATGTGTTTGGTGAATTGGGGACTCAGAGCAATTTCAGATTGATATCACATTCCACTCCTGTAGCAAGAGCTGTTGAGTTTGAGTCAAGAATTTCAATCATCAGAGATGTAATGGATGCACTGACAGATGATGAATCCAATCCCATTGTAATATGGGGAGATTCCATTGAATCCGATCTCAAGCTGCGTCCAATAGCAGAACAAGTTCTTGCTGAATGTGATGGTTTACCAGTTGCAATTTCTACAGTTGGAGGGGCACTACAAGAAAGTGAAGATTTTGAAATTGAAGAGTTGGTTAGAATTGCGATTGGGCTTGGGCTTTTGAAACGCATTGATTCAATATCTCAAGAGGTCTTGTGGTAG

Protein Analysis

910

Amino Acids

101.09

Weight (kDa)

7.2

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 682 - 798 2.6e-09 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 104, 239
Acc36I ACCTGC 2 cut(s) 1064, 1918
AccB7I CCANNNNNTGG 1 cut(s) 1689
AccBSI CCGCTC 2 cut(s) 208, 1680
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 1810
AciI CCGC 8 cut(s) 119, 206, 307, 437, 592, 1031, 1678, 1808
AclWI GGATC 6 cut(s) 316, 1041, 1054, 1716, 1941, 1983
AcsI RAATTY 4 cut(s) 724, 1777, 2310, 2457
AcuI CTGAAG 4 cut(s) 266, 516, 1724, 1935
AfaI GTAC 7 cut(s) 1006, 1131, 1283, 1424, 1533, 1823, 1920
AfiI CCNNNNNNNGG 5 cut(s) 201, 1056, 1689, 1725, 1877
AflIII ACRYGT 5 cut(s) 78, 967, 1540, 1634, 1921
AhdI GACNNNNNGTC 1 cut(s) 10
AjnI CCWGG 4 cut(s) 51, 273, 702, 1860
AjuI GAANNNNNNNTTGG 2 cut(s) 2183, 2215
Alw21I GWGCWC 3 cut(s) 566, 1096, 2230
Alw26I GTCTC 4 cut(s) 622, 1518, 1625, 2127
AlwI GGATC 6 cut(s) 316, 1041, 1054, 1716, 1941, 1983
AlwNI CAGNNNCTG 2 cut(s) 58, 1861
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 5 cut(s) 203, 452, 480, 1206, 1857
ApeKI GCWGC 9 cut(s) 815, 1034, 1184, 1609, 1674, 1733, 1960, 2337, 2551
ApoI RAATTY 4 cut(s) 724, 1777, 2310, 2457
AseI ATTAAT 2 cut(s) 513, 1026
Asp700I GAANNNNTTC 1 cut(s) 2571
AspS9I GGNCC 7 cut(s) 4, 72, 97, 457, 480, 1858, 2173
AsuC2I CCSGG 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 5 cut(s) 4, 72, 97, 457, 2173
AxyI CCTNAGG 2 cut(s) 693, 975
BaeGI GKGCMC 1 cut(s) 2626
BamHI GGATCC 1 cut(s) 1046
BanII GRGCYC 3 cut(s) 566, 1096, 2230
BbsI GAAGAC 1 cut(s) 1650
Bbv12I GWGCWC 3 cut(s) 566, 1096, 2230
BbvCI CCTCAGC 1 cut(s) 1320
BbvI GCAGC 9 cut(s) 802, 1046, 1196, 1621, 1661, 1745, 1947, 2324, 2538
BceAI ACGGC 1 cut(s) 2001
BciT130I CCWGG 4 cut(s) 53, 275, 704, 1862
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 4 cut(s) 622, 1518, 1625, 2127
BfaI CTAG 5 cut(s) 329, 653, 672, 953, 1008
BfmI CTRYAG 3 cut(s) 1398, 2427, 2610
BfuAI ACCTGC 2 cut(s) 1064, 1918
BlpI GCTNAGC 1 cut(s) 1140
BmcAI AGTACT 1 cut(s) 1006
Bme1390I CCNGG 5 cut(s) 53, 275, 545, 704, 1862
Bme18I GGWCC 5 cut(s) 4, 72, 97, 457, 2173
BmeRI GACNNNNNGTC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 7 cut(s) 4, 72, 97, 457, 480, 1858, 2173
BmiI GGNNCC 5 cut(s) 6, 74, 99, 993, 1048
BmrFI CCNGG 5 cut(s) 53, 275, 545, 704, 1862
BmsI GCATC 6 cut(s) 233, 937, 2137, 2249, 2290, 2473
BoxI GACNNNNGTC 1 cut(s) 2276
BpiI GAAGAC 1 cut(s) 1650
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 1320
Bpu1102I GCTNAGC 1 cut(s) 1140
BpuEI CTTGAG 5 cut(s) 1107, 1741, 1838, 2531, 2697
BpuMI CCSGG 1 cut(s) 545
Bsa29I ATCGAT 1 cut(s) 420
BsaAI YACGTR 2 cut(s) 1133, 1541
BsaBI GATNNNNATC 1 cut(s) 2410
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 5 cut(s) 51, 702, 850, 1659, 1860
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 5 cut(s) 201, 1056, 1689, 1725, 1877
Bse21I CCTNAGG 2 cut(s) 693, 975
Bse3DI GCAATG 1 cut(s) 1483
Bse8I GATNNNNATC 1 cut(s) 2410
BseBI CCWGG 4 cut(s) 53, 275, 704, 1862
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 5 cut(s) 51, 702, 850, 1659, 1860
BseGI GGATG 8 cut(s) 434, 1255, 1552, 1694, 1901, 2128, 2305, 2488
BseJI GATNNNNATC 1 cut(s) 2410
BseLI CCNNNNNNNGG 5 cut(s) 201, 1056, 1689, 1725, 1877
BseMI GCAATG 1 cut(s) 1483
BseMII CTCAG 9 cut(s) 635, 711, 987, 1229, 1311, 1868, 1932, 2138, 2405
BseRI GAGGAG 6 cut(s) 9, 105, 1794, 1879, 1882, 2201
BseSI GKGCMC 1 cut(s) 2626
BseXI GCAGC 9 cut(s) 802, 1046, 1196, 1621, 1661, 1745, 1947, 2324, 2538
BseYI CCCAGC 1 cut(s) 1825
BsgI GTGCAG 2 cut(s) 626, 1628
Bsh1236I CGCG 1 cut(s) 1810
BshFI GGCC 5 cut(s) 205, 454, 482, 1208, 1859
BshVI ATCGAT 1 cut(s) 420
BsiHKAI GWGCWC 3 cut(s) 566, 1096, 2230
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 3 cut(s) 44, 455, 545
BslFI GGGAC 4 cut(s) 58, 956, 2041, 2401
BslI CCNNNNNNNGG 5 cut(s) 201, 1056, 1689, 1725, 1877
BsmAI GTCTC 4 cut(s) 622, 1518, 1625, 2127
BsmBI CGTCTC 1 cut(s) 1518
BsmFI GGGAC 4 cut(s) 58, 956, 2041, 2401
BsnI GGCC 5 cut(s) 205, 454, 482, 1208, 1859
Bso31I GGTCTC 1 cut(s) 622
BsoBI CYCGRG 1 cut(s) 371
Bsp1286I GDGCHC 4 cut(s) 566, 1096, 2230, 2626
Bsp143I GATC 9 cut(s) 321, 781, 1046, 1708, 1933, 1975, 2004, 2343, 2542
Bsp1720I GCTNAGC 1 cut(s) 1140
BspACI CCGC 8 cut(s) 119, 206, 307, 437, 592, 1031, 1678, 1808
BspANI GGCC 5 cut(s) 205, 454, 482, 1208, 1859
BspCNI CTCAG 9 cut(s) 636, 712, 988, 1230, 1312, 1867, 1933, 2137, 2404
BspDI ATCGAT 1 cut(s) 420
BspFNI CGCG 1 cut(s) 1810
BspHI TCATGA 2 cut(s) 2328, 2346
BspLI GGNNCC 5 cut(s) 6, 74, 99, 993, 1048
BspMI ACCTGC 2 cut(s) 1064, 1918
BspPI GGATC 6 cut(s) 316, 1041, 1054, 1716, 1941, 1983
BspTNI GGTCTC 1 cut(s) 622
BsrBI CCGCTC 2 cut(s) 208, 1680
BsrDI GCAATG 1 cut(s) 1483
BssECI CCNNGG 5 cut(s) 51, 702, 850, 1659, 1860
BssMI GATC 9 cut(s) 321, 781, 1046, 1708, 1933, 1975, 2004, 2343, 2542
BssT1I CCWWGG 2 cut(s) 850, 1659
Bst2UI CCWGG 4 cut(s) 53, 275, 704, 1862
Bst6I CTCTTC 3 cut(s) 1055, 1645, 2649
BstAPI GCANNNNNTGC 1 cut(s) 363
BstBAI YACGTR 2 cut(s) 1133, 1541
BstC8I GCNNGC 3 cut(s) 609, 613, 864
BstEII GGTNACC 1 cut(s) 46
BstENI CCTNNNNNAGG 1 cut(s) 1723
BstF5I GGATG 8 cut(s) 434, 1255, 1552, 1694, 1901, 2128, 2305, 2488
BstFNI CGCG 1 cut(s) 1810
BstKTI GATC 9 cut(s) 324, 784, 1049, 1711, 1936, 1978, 2007, 2346, 2545
BstMAI GTCTC 4 cut(s) 622, 1518, 1625, 2127
BstMBI GATC 9 cut(s) 321, 781, 1046, 1708, 1933, 1975, 2004, 2343, 2542
BstMWI GCNNNNNNNGC 4 cut(s) 363, 1742, 1759, 2016
BstNI CCWGG 4 cut(s) 53, 275, 704, 1862
BstNSI RCATGY 5 cut(s) 82, 971, 1638, 1674, 1925
BstPAI GACNNNNGTC 1 cut(s) 2276
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 5 cut(s) 51, 273, 543, 702, 1860
BstSFI CTRYAG 3 cut(s) 1398, 2427, 2610
BstSLI GKGCMC 1 cut(s) 2626
BstUI CGCG 1 cut(s) 1810
BstV1I GCAGC 9 cut(s) 802, 1046, 1196, 1621, 1661, 1745, 1947, 2324, 2538
BstV2I GAAGAC 1 cut(s) 1650
BstX2I RGATCY 4 cut(s) 321, 1046, 1933, 1975
BstYI RGATCY 4 cut(s) 321, 1046, 1933, 1975
Bsu15I ATCGAT 1 cut(s) 420
Bsu36I CCTNAGG 2 cut(s) 693, 975
BsuRI GGCC 5 cut(s) 205, 454, 482, 1208, 1859
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 8 cut(s) 434, 1255, 1552, 1694, 1901, 2128, 2305, 2488
BtsI GCAGTG 2 cut(s) 175, 219
BtsIMutI CAGTG 5 cut(s) 56, 175, 219, 609, 2486
BveI ACCTGC 2 cut(s) 1064, 1918
Cac8I GCNNGC 3 cut(s) 609, 613, 864
CaiI CAGNNNCTG 2 cut(s) 58, 1861
CciI TCATGA 2 cut(s) 2328, 2346
Cfr13I GGNCC 7 cut(s) 4, 72, 97, 457, 480, 1858, 2173
ClaI ATCGAT 1 cut(s) 420
CseI GACGC 3 cut(s) 119, 1934, 2543
Csp6I GTAC 7 cut(s) 1005, 1130, 1282, 1423, 1532, 1822, 1919
CviQI GTAC 7 cut(s) 1005, 1130, 1282, 1423, 1532, 1822, 1919
DpnI GATC 9 cut(s) 323, 783, 1048, 1710, 1935, 1977, 2006, 2345, 2544
DpnII GATC 9 cut(s) 321, 781, 1046, 1708, 1933, 1975, 2004, 2343, 2542
DrdI GACNNNNNNGTC 2 cut(s) 104, 239
DriI GACNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 2 cut(s) 104, 239
Eam1104I CTCTTC 3 cut(s) 1055, 1645, 2649
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 3 cut(s) 1055, 1645, 2649
Ecl136II GAGCTC 3 cut(s) 564, 1094, 2228
Eco130I CCWWGG 2 cut(s) 850, 1659
Eco147I AGGCCT 1 cut(s) 1208
Eco24I GRGCYC 3 cut(s) 566, 1096, 2230
Eco31I GGTCTC 1 cut(s) 622
Eco32I GATATC 4 cut(s) 475, 1224, 2326, 2412
Eco47I GGWCC 5 cut(s) 4, 72, 97, 457, 2173
Eco53kI GAGCTC 3 cut(s) 564, 1094, 2228
Eco57I CTGAAG 4 cut(s) 266, 516, 1724, 1935
Eco81I CCTNAGG 2 cut(s) 693, 975
Eco88I CYCGRG 1 cut(s) 371
Eco91I GGTNACC 1 cut(s) 46
EcoICRI GAGCTC 3 cut(s) 564, 1094, 2228
EcoNI CCTNNNNNAGG 1 cut(s) 1723
EcoO109I RGGNCCY 2 cut(s) 72, 1858
EcoO65I GGTNACC 1 cut(s) 46
EcoRI GAATTC 2 cut(s) 724, 2310
EcoRII CCWGG 4 cut(s) 51, 273, 702, 1860
EcoRV GATATC 4 cut(s) 475, 1224, 2326, 2412
EcoT14I CCWWGG 2 cut(s) 850, 1659
EcoT22I ATGCAT 1 cut(s) 368
EcoT38I GRGCYC 3 cut(s) 566, 1096, 2230
ErhI CCWWGG 2 cut(s) 850, 1659
Esp3I CGTCTC 1 cut(s) 1518
FalI AAGNNNNNCTT 4 cut(s) 1547, 1579, 1964, 1996
FaqI GGGAC 4 cut(s) 58, 956, 2041, 2401
FauI CCCGC 1 cut(s) 599
FblI GTMKAC 1 cut(s) 108
FokI GGATG 8 cut(s) 441, 1262, 1559, 1701, 1888, 2115, 2312, 2495
FriOI GRGCYC 3 cut(s) 566, 1096, 2230
FspBI CTAG 5 cut(s) 329, 653, 672, 953, 1008
GsaI CCCAGC 1 cut(s) 1829
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 5 cut(s) 205, 454, 482, 1208, 1859
HapII CCGG 3 cut(s) 44, 455, 545
HgaI GACGC 3 cut(s) 119, 1934, 2543
HincII GTYRAC 3 cut(s) 109, 232, 265
HindII GTYRAC 3 cut(s) 109, 232, 265
HindIII AAGCTT 3 cut(s) 1751, 1760, 1814
HpaII CCGG 3 cut(s) 44, 455, 545
Hpy166II GTNNAC 8 cut(s) 109, 232, 265, 789, 1376, 1425, 2067, 2594
Hpy8I GTNNAC 8 cut(s) 109, 232, 265, 789, 1376, 1425, 2067, 2594
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 6 cut(s) 540, 550, 764, 1492, 1699, 1871
HpyCH4IV ACGT 3 cut(s) 505, 1132, 1540
HpyF10VI GCNNNNNNNGC 4 cut(s) 363, 1742, 1759, 2016
HpySE526I ACGT 3 cut(s) 505, 1132, 1540
Kzo9I GATC 9 cut(s) 321, 781, 1046, 1708, 1933, 1975, 2004, 2343, 2542
LmnI GCTCC 8 cut(s) 118, 991, 1091, 1099, 1550, 1685, 1807, 1892
Lsp1109I GCAGC 9 cut(s) 802, 1046, 1196, 1621, 1661, 1745, 1947, 2324, 2538
LweI GCATC 6 cut(s) 233, 937, 2137, 2249, 2290, 2473
MaeI CTAG 5 cut(s) 329, 653, 672, 953, 1008
MaeII ACGT 3 cut(s) 505, 1132, 1540
MalI GATC 9 cut(s) 323, 783, 1048, 1710, 1935, 1977, 2006, 2345, 2544
MbiI CCGCTC 2 cut(s) 208, 1680
MboI GATC 9 cut(s) 321, 781, 1046, 1708, 1933, 1975, 2004, 2343, 2542
MfeI CAATTG 1 cut(s) 2304
MflI RGATCY 4 cut(s) 321, 1046, 1933, 1975
MhlI GDGCHC 4 cut(s) 566, 1096, 2230, 2626
MlyI GAGTC 4 cut(s) 136, 1115, 2383, 2459
MmeI TCCRAC 6 cut(s) 54, 349, 363, 1387, 1578, 2596
Mph1103I ATGCAT 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 2571
MseI TTAA 7 cut(s) 498, 513, 665, 797, 842, 1026, 1464
MslI CAYNNNNRTG 3 cut(s) 180, 299, 966
MspA1I CMGCKG 1 cut(s) 1187
MspI CCGG 3 cut(s) 44, 455, 545
MspR9I CCNGG 5 cut(s) 53, 275, 545, 704, 1862
MunI CAATTG 1 cut(s) 2304
MvaI CCWGG 4 cut(s) 53, 275, 704, 1862
MvnI CGCG 1 cut(s) 1810
MwoI GCNNNNNNNGC 4 cut(s) 363, 1742, 1759, 2016
NciI CCSGG 1 cut(s) 545
NdeII GATC 9 cut(s) 321, 781, 1046, 1708, 1933, 1975, 2004, 2343, 2542
NlaIV GGNNCC 5 cut(s) 6, 74, 99, 993, 1048
NmuCI GTSAC 4 cut(s) 46, 217, 1039, 1501
NsiI ATGCAT 1 cut(s) 368
NspI RCATGY 5 cut(s) 82, 971, 1638, 1674, 1925
PaeR7I CTCGAG 1 cut(s) 371
PagI TCATGA 2 cut(s) 2328, 2346
PceI AGGCCT 1 cut(s) 1208
PciI ACATGT 4 cut(s) 78, 967, 1634, 1921
PdmI GAANNNNTTC 1 cut(s) 2571
PflMI CCANNNNNTGG 1 cut(s) 1689
PleI GAGTC 4 cut(s) 136, 1114, 2383, 2458
PpsI GAGTC 4 cut(s) 136, 1114, 2383, 2458
Ppu21I YACGTR 2 cut(s) 1133, 1541
PpuMI RGGWCCY 1 cut(s) 72
PscI ACATGT 4 cut(s) 78, 967, 1634, 1921
PshAI GACNNNNGTC 1 cut(s) 2276
PshBI ATTAAT 2 cut(s) 513, 1026
Psp124BI GAGCTC 3 cut(s) 566, 1096, 2230
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 4 cut(s) 51, 273, 702, 1860
PspEI GGTNACC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 1825
PspGI CCWGG 4 cut(s) 51, 273, 702, 1860
PspN4I GGNNCC 5 cut(s) 6, 74, 99, 993, 1048
PspPI GGNCC 7 cut(s) 4, 72, 97, 457, 480, 1858, 2173
PspPPI RGGWCCY 1 cut(s) 72
PstNI CAGNNNCTG 2 cut(s) 58, 1861
PsuI RGATCY 4 cut(s) 321, 1046, 1933, 1975
PvuII CAGCTG 1 cut(s) 1187
RsaI GTAC 7 cut(s) 1006, 1131, 1283, 1424, 1533, 1823, 1920
RsaNI GTAC 7 cut(s) 1005, 1130, 1282, 1423, 1532, 1822, 1919
RseI CAYNNNNRTG 3 cut(s) 180, 299, 966
SacI GAGCTC 3 cut(s) 566, 1096, 2230
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 7 cut(s) 498, 513, 665, 797, 842, 1026, 1464
Sau3AI GATC 9 cut(s) 321, 781, 1046, 1708, 1933, 1975, 2004, 2343, 2542
Sau96I GGNCC 7 cut(s) 4, 72, 97, 457, 480, 1858, 2173
ScaI AGTACT 1 cut(s) 1006
SchI GAGTC 4 cut(s) 136, 1115, 2383, 2459
ScrFI CCNGG 5 cut(s) 53, 275, 545, 704, 1862
SduI GDGCHC 4 cut(s) 566, 1096, 2230, 2626
SfaNI GCATC 6 cut(s) 233, 937, 2137, 2249, 2290, 2473
SfcI CTRYAG 3 cut(s) 1398, 2427, 2610
Sfr274I CTCGAG 1 cut(s) 371
SinI GGWCC 5 cut(s) 4, 72, 97, 457, 2173
SlaI CTCGAG 1 cut(s) 371
SmiMI CAYNNNNRTG 3 cut(s) 180, 299, 966
SmlI CTYRAG 6 cut(s) 371, 1122, 1720, 1817, 2546, 2712
SmoI CTYRAG 6 cut(s) 371, 1122, 1720, 1817, 2546, 2712
SseBI AGGCCT 1 cut(s) 1208
SsiI CCGC 8 cut(s) 119, 206, 307, 437, 592, 1031, 1678, 1808
SspI AATATT 1 cut(s) 1838
SspMI CTAG 5 cut(s) 329, 653, 672, 953, 1008
SstI GAGCTC 3 cut(s) 566, 1096, 2230
StuI AGGCCT 1 cut(s) 1208
StyD4I CCNGG 5 cut(s) 51, 273, 543, 702, 1860
StyI CCWWGG 2 cut(s) 850, 1659
TaiI ACGT 3 cut(s) 508, 1135, 1543
TaqI TCGA 5 cut(s) 84, 108, 372, 420, 1370
TatI WGTACW 3 cut(s) 1004, 1422, 1918
TauI GCSGC 3 cut(s) 208, 1034, 1680
Tru1I TTAA 7 cut(s) 498, 513, 665, 797, 842, 1026, 1464
Tru9I TTAA 7 cut(s) 498, 513, 665, 797, 842, 1026, 1464
TscAI CASTG 5 cut(s) 63, 182, 226, 609, 2493
TseFI GTSAC 4 cut(s) 46, 217, 1039, 1501
TseI GCWGC 9 cut(s) 815, 1034, 1184, 1609, 1674, 1733, 1960, 2337, 2551
Tsp45I GTSAC 4 cut(s) 46, 217, 1039, 1501
TspDTI ATGAA 8 cut(s) 528, 1058, 1067, 1307, 1890, 2093, 2345, 2514
TspGWI ACGGA 2 cut(s) 1072, 1662
TspRI CASTG 5 cut(s) 63, 182, 226, 609, 2493
Van91I CCANNNNNTGG 1 cut(s) 1689
VpaK11BI GGWCC 5 cut(s) 4, 72, 97, 457, 2173
VspI ATTAAT 2 cut(s) 513, 1026
XagI CCTNNNNNAGG 1 cut(s) 1723
XapI RAATTY 4 cut(s) 724, 1777, 2310, 2457
XbaI TCTAGA 1 cut(s) 952
XceI RCATGY 5 cut(s) 82, 971, 1638, 1674, 1925
XcmI CCANNNNNNNNNTGG 1 cut(s) 1858
XhoI CTCGAG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 2571
XspI CTAG 5 cut(s) 329, 653, 672, 953, 1008
ZrmI AGTACT 1 cut(s) 1006
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.