FvH4_2g17420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000203
Physical Location & Seq
Reverse (-)
15013785 .. 15015648
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17420.t1

Sequence Viewer

Length: 213 bp
ATGATCAAATTCAACTCCCACAAACATAGTTGGTCTCCGGAAGATGATCGAGCGAGTCATATTCCGCAACAAGACTTTTTTAATTCAGACTGTTCTGACTTGGGAGGTTTAGATCATAAAAGAAAAAAAGAAACTCAGAGAAGACAAATGGCAGATATTGTGATTACAGTTGTTGGAAAATTGACCGAGTACACAGCCACACCTGTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.06

Weight (kDa)

6.9

Isoelectric Point (pI)

55.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 37
AciI CCGC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 39
Aor13HI TCCGGA 1 cut(s) 37
ApoI RAATTY 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 148
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 37
BseAI TCCGGA 1 cut(s) 37
BseMII CTCAG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 38
BsmAI GTCTC 1 cut(s) 39
Bso31I GGTCTC 1 cut(s) 39
Bsp13I TCCGGA 1 cut(s) 37
Bsp143I GATC 3 cut(s) 3, 46, 112
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 148
BspEI TCCGGA 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 39
BssMI GATC 3 cut(s) 3, 46, 112
Bst4CI ACNGT 2 cut(s) 92, 169
BstDEI CTNAG 1 cut(s) 135
BstKTI GATC 3 cut(s) 6, 49, 115
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 3, 46, 112
BstV2I GAAGAC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 190
CviJI RGCY 1 cut(s) 197
CviKI_1 RGCY 1 cut(s) 197
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 135
DpnI GATC 3 cut(s) 5, 48, 114
DpnII GATC 3 cut(s) 3, 46, 112
Eco31I GGTCTC 1 cut(s) 39
FaiI YATR 3 cut(s) 27, 60, 117
FbaI TGATCA 1 cut(s) 3
HapII CCGG 1 cut(s) 38
HinfI GANTC 1 cut(s) 55
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 192
Hpy188I TCNGA 3 cut(s) 88, 97, 138
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 92, 169
HpyF3I CTNAG 1 cut(s) 135
Kpn2I TCCGGA 1 cut(s) 37
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 46, 112
LpnPI CCDG 1 cut(s) 51
MalI GATC 3 cut(s) 5, 48, 114
MboI GATC 3 cut(s) 3, 46, 112
MboII GAAGA 2 cut(s) 53, 153
MluCI AATT 3 cut(s) 8, 82, 179
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 1 cut(s) 98
MroI TCCGGA 1 cut(s) 37
MseI TTAA 1 cut(s) 81
MspI CCGG 1 cut(s) 38
NdeII GATC 3 cut(s) 3, 46, 112
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 3 cut(s) 3, 46, 112
SchI GAGTC 1 cut(s) 64
SetI ASST 2 cut(s) 109, 205
SgeI CNNG 6 cut(s) 50, 62, 66, 83, 112, 199
Sse9I AATT 3 cut(s) 8, 82, 179
SsiI CCGC 1 cut(s) 65
TaaI ACNGT 2 cut(s) 92, 169
TaqI TCGA 1 cut(s) 49
TaqII GACCGA 1 cut(s) 200
TasI AATT 3 cut(s) 8, 82, 179
TatI WGTACW 1 cut(s) 189
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
XapI RAATTY 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.