Rmu_ssc0000173.1_g000025

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000173.1
OG0000203
Physical Location & Seq
Forward (+)
119151 .. 121049
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000173.1_g000025.1.cds

Sequence Viewer

Length: 939 bp
atggtggtgagctgctgtgccaatctacttggtgttttctcatccagtgtggtgcaaaacttacagaatcttgaacaacttgtagtaaggtggtgtgactcactggaagcagtatttgagcttgaaggtttagaaatgaaagaaaaggatggtgttactgcaacactattgtcttgcttggagaaaatggagttggatgatctacccatgttggcatacttgtggaagccacctcaaaacattctggcatttcaaaacttaacaatgcttcaagtttcgaattgcgacagattggaatatgtgttcccgctcttcatgacatttgttccaccggtcgtagccacaggaagtgacccgatctacctttttggtgaacaggttgactttccagttttggagacactagaacttcgtgacatgtgccacttcaaagagatatggaagaacaaacttccaacccactccttctgtgaactaagagatctaaacgtgtccaattgtatggaattattgcatttggtgccaatgtttatgcaaaacaggttaccgaaactagagaagttacatgtcagtgactgcaggtcactagaagagatttttgaattgagaaatgtgtctggcgatgaaggggaagctgtaatcatttcacagtcaggggaaacatcttcaatttcccaacctgaacgaataataaaccagatggattacagactaacccgaggctttccaaatttgacatcaataaagatttctggttgtaacaatttgagaaatctgctctctcactccattgccagaggtctggtgaagctcaaaaatctatccatagatcactgccagaagatggaagaaatcatagcagcagatggcgaggaaacagaggacacggtgagtattagtgtaaggcttggtaagatgtttttatcgactttcatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

312

Amino Acids

35.43

Weight (kDa)

4.83

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 520
AccB7I CCANNNNNTGG 1 cut(s) 844
AccBSI CCGCTC 1 cut(s) 310
AciI CCGC 1 cut(s) 308
AcsI RAATTY 1 cut(s) 730
AfiI CCNNNNNNNGG 1 cut(s) 844
AflIII ACRYGT 3 cut(s) 417, 489, 565
AgeI ACCGGT 1 cut(s) 331
AgsI TTSAA 7 cut(s) 74, 125, 254, 272, 430, 602, 669
AhdI GACNNNNNGTC 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 4 cut(s) 12, 121, 635, 811
AluI AGCT 4 cut(s) 12, 121, 635, 811
Alw26I GTCTC 1 cut(s) 392
AlwNI CAGNNNCTG 1 cut(s) 576
Ama87I CYCGRG 1 cut(s) 717
ApeKI GCWGC 2 cut(s) 12, 860
ApoI RAATTY 1 cut(s) 730
AsiGI ACCGGT 1 cut(s) 331
AsuHPI GGTGA 4 cut(s) 19, 383, 817, 901
AsuII TTCGAA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 717
BanI GGYRCC 1 cut(s) 520
BbvI GCAGC 1 cut(s) 872
BccI CCATC 4 cut(s) 143, 694, 838, 860
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 4 cut(s) 404, 554, 587, 937
BfmI CTRYAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 570
BglII AGATCT 1 cut(s) 481
BisI GCNGC 2 cut(s) 13, 861
BlsI GCNGC 2 cut(s) 14, 862
BmeRI GACNNNNNGTC 1 cut(s) 580
BmeT110I CYCGRG 1 cut(s) 717
BmiI GGNNCC 1 cut(s) 522
Bpu14I TTCGAA 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 718
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 1 cut(s) 844
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 3 cut(s) 45, 108, 389
Bse3DI GCAATG 1 cut(s) 789
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 3 cut(s) 41, 154, 202
BseLI CCNNNNNNNGG 1 cut(s) 844
BseMI GCAATG 1 cut(s) 789
BseNI ACTGG 3 cut(s) 45, 108, 389
BseXI GCAGC 1 cut(s) 872
Bsh1285I CGRYCG 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 520
BshTI ACCGGT 1 cut(s) 331
BsiEI CGRYCG 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 717
BsiSI CCGG 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 844
BsmAI GTCTC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 717
Bsp119I TTCGAA 1 cut(s) 278
Bsp143I GATC 4 cut(s) 199, 357, 481, 829
BspACI CCGC 1 cut(s) 308
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 522
BspMAI CTGCAG 1 cut(s) 581
BspMI ACCTGC 1 cut(s) 570
BspQI GCTCTTC 1 cut(s) 317
BspT104I TTCGAA 1 cut(s) 278
BspT107I GGYRCC 1 cut(s) 520
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 789
BsrFI RCCGGY 1 cut(s) 331
BsrI ACTGG 3 cut(s) 45, 108, 389
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 4 cut(s) 199, 357, 481, 829
Bst4CI ACNGT 2 cut(s) 651, 889
Bst6I CTCTTC 2 cut(s) 317, 585
BstAPI GCANNNNNTGC 1 cut(s) 520
BstBI TTCGAA 1 cut(s) 278
BstDEI CTNAG 1 cut(s) 476
BstEII GGTNACC 1 cut(s) 543
BstF5I GGATG 3 cut(s) 41, 154, 202
BstKTI GATC 4 cut(s) 202, 360, 484, 832
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 4 cut(s) 199, 357, 481, 829
BstMCI CGRYCG 1 cut(s) 336
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNSI RCATGY 2 cut(s) 421, 569
BstPI GGTNACC 1 cut(s) 543
BstSFI CTRYAG 1 cut(s) 577
BstV1I GCAGC 1 cut(s) 872
BstX2I RGATCY 1 cut(s) 481
BstXI CCANNNNNNTGG 2 cut(s) 502, 802
BstYI RGATCY 1 cut(s) 481
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 3 cut(s) 41, 154, 202
BtsI GCAGTG 1 cut(s) 832
BtsIMutI CAGTG 4 cut(s) 52, 101, 577, 832
BveI ACCTGC 1 cut(s) 570
CaiI CAGNNNCTG 1 cut(s) 576
CciI TCATGA 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 331
CspAI ACCGGT 1 cut(s) 331
CviAII CATG 4 cut(s) 208, 316, 418, 566
CviJI RGCY 8 cut(s) 12, 121, 229, 341, 635, 723, 811, 907
CviKI_1 RGCY 8 cut(s) 12, 121, 229, 341, 635, 723, 811, 907
DdeI CTNAG 1 cut(s) 476
DpnI GATC 4 cut(s) 201, 359, 483, 831
DpnII GATC 4 cut(s) 199, 357, 481, 829
DriI GACNNNNNGTC 1 cut(s) 580
Eam1104I CTCTTC 2 cut(s) 317, 585
Eam1105I GACNNNNNGTC 1 cut(s) 580
EarI CTCTTC 2 cut(s) 317, 585
Eco88I CYCGRG 1 cut(s) 717
Eco91I GGTNACC 1 cut(s) 543
EcoO65I GGTNACC 1 cut(s) 543
FaeI CATG 4 cut(s) 211, 319, 421, 569
FatI CATG 4 cut(s) 207, 315, 417, 565
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 13, 861
FokI GGATG 3 cut(s) 28, 161, 209
Fsp4HI GCNGC 2 cut(s) 13, 861
FspBI CTAG 4 cut(s) 404, 554, 587, 937
GluI GCNGC 2 cut(s) 13, 861
HapII CCGG 1 cut(s) 332
Hin1II CATG 4 cut(s) 211, 319, 421, 569
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 2 cut(s) 67, 98
HpaII CCGG 1 cut(s) 332
HphI GGTGA 4 cut(s) 19, 383, 817, 901
Hpy166II GTNNAC 3 cut(s) 374, 382, 473
Hpy188III TCNNGA 3 cut(s) 71, 316, 413
Hpy8I GTNNAC 3 cut(s) 374, 382, 473
HpyAV CCTTC 3 cut(s) 119, 475, 620
HpyCH4III ACNGT 2 cut(s) 651, 889
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 5 cut(s) 55, 161, 514, 535, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 4 cut(s) 211, 319, 421, 569
Kzo9I GATC 4 cut(s) 199, 357, 481, 829
LguI GCTCTTC 1 cut(s) 317
Lsp1109I GCAGC 1 cut(s) 872
MaeI CTAG 4 cut(s) 404, 554, 587, 937
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 9 cut(s) 95, 154, 350, 413, 543, 561, 572, 582, 758
MalI GATC 4 cut(s) 201, 359, 483, 831
MbiI CCGCTC 1 cut(s) 310
MboI GATC 4 cut(s) 199, 357, 481, 829
MboII GAAGA 6 cut(s) 304, 454, 602, 657, 853, 860
MfeI CAATTG 1 cut(s) 496
MflI RGATCY 1 cut(s) 481
MluCI AATT 7 cut(s) 280, 496, 506, 602, 669, 730, 763
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 174, 479
MnlI CCTC 5 cut(s) 243, 713, 791, 865, 874
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 220, 570
MspI CCGG 1 cut(s) 332
MunI CAATTG 1 cut(s) 496
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeII GATC 4 cut(s) 199, 357, 481, 829
NlaIII CATG 4 cut(s) 211, 319, 421, 569
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 5 cut(s) 95, 350, 413, 572, 582
NspI RCATGY 2 cut(s) 421, 569
NspV TTCGAA 1 cut(s) 278
PagI TCATGA 1 cut(s) 315
PciI ACATGT 2 cut(s) 417, 565
PciSI GCTCTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 844
PinAI ACCGGT 1 cut(s) 331
PkrI GCNGC 2 cut(s) 14, 862
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PscI ACATGT 2 cut(s) 417, 565
PspEI GGTNACC 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 522
PstI CTGCAG 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 576
PsuI RGATCY 1 cut(s) 481
RseI CAYNNNNRTG 2 cut(s) 220, 570
SapI GCTCTTC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 2 cut(s) 13, 861
Sau3AI GATC 4 cut(s) 199, 357, 481, 829
SchI GAGTC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 577
SfuI TTCGAA 1 cut(s) 278
SmiMI CAYNNNNRTG 2 cut(s) 220, 570
Sse9I AATT 7 cut(s) 280, 496, 506, 602, 669, 730, 763
SsiI CCGC 1 cut(s) 308
SspMI CTAG 4 cut(s) 404, 554, 587, 937
TaaI ACNGT 2 cut(s) 651, 889
TaiI ACGT 1 cut(s) 492
TaqI TCGA 2 cut(s) 278, 926
TasI AATT 7 cut(s) 280, 496, 506, 602, 669, 730, 763
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 4 cut(s) 52, 108, 577, 839
TseFI GTSAC 5 cut(s) 95, 350, 413, 572, 582
TseI GCWGC 2 cut(s) 12, 860
Tsp45I GTSAC 5 cut(s) 95, 350, 413, 572, 582
TspDTI ATGAA 4 cut(s) 152, 304, 639, 922
TspRI CASTG 4 cut(s) 52, 108, 577, 839
Van91I CCANNNNNTGG 1 cut(s) 844
XapI RAATTY 1 cut(s) 730
XceI RCATGY 2 cut(s) 421, 569
XspI CTAG 4 cut(s) 404, 554, 587, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.