Rh7AG055100

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000203
Physical Location & Seq
Reverse (-)
3822929 .. 3829514
6586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG055100.1

Sequence Viewer

Length: 408 bp
ATGATGGGGTTGAAAAGAGAATTTGTTGACTTTGAGCTAAAAATAATACCACCAGGTGTTATATCAAGTTTATCTCCATTAGAAGAATTATACATGTTCCATAGCTTCGAGGATTGGGTAGTTGAGAAACTAGCCTCGATCGAAACAACCAATTGGATCTTTCAATTGGAGGCTGAGGAGAGAGTTGATGAATCCGAAGAAGTGGACTATCGGGAAACGTTACTGGACACGTGGAAGAGATTCAATAGATTGGCGGTTGAGCAACCAGCAAACATAGGAAACCAGTTTAGAAAAGAGGTTCAAGGCCTGGACAGAGCAAACGCTGAGCACACAAGGTGGGCTAACTCCATGGATTGGAAAACTGGGATAGTGGGATACTTGCAGAGTTACTTTCCTTGTCCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

135

Amino Acids

15.91

Weight (kDa)

4.65

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 354
AciI CCGC 1 cut(s) 254
AclI AACGTT 1 cut(s) 218
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 20
AcvI CACGTG 1 cut(s) 231
AdeI CACNNNGTG 2 cut(s) 56, 336
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 2 cut(s) 93, 228
AgsI TTSAA 4 cut(s) 13, 164, 244, 302
AjnI CCWGG 2 cut(s) 52, 306
AluBI AGCT 2 cut(s) 37, 105
AluI AGCT 2 cut(s) 37, 105
Alw21I GWGCWC 1 cut(s) 330
AlwI GGATC 1 cut(s) 164
AoxI GGCC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 239
BbrPI CACGTG 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 54, 308
BciVI GTATCC 1 cut(s) 368
BfaI CTAG 1 cut(s) 131
BfuI GTATCC 1 cut(s) 368
BlpI GCTNAGC 1 cut(s) 324
Bme1390I CCNGG 2 cut(s) 54, 308
BmrFI CCNGG 2 cut(s) 54, 308
BmrI ACTGGG 1 cut(s) 372
BmuI ACTGGG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 354
Bse1I ACTGG 3 cut(s) 228, 283, 367
BseBI CCWGG 2 cut(s) 54, 308
BseDI CCNNGG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 165, 315
BseNI ACTGG 3 cut(s) 228, 283, 367
BseRI GAGGAG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 306
BsiEI CGRYCG 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 330
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 354
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 2 cut(s) 138, 156
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 2 cut(s) 166, 316
BspPI GGATC 1 cut(s) 164
BsrI ACTGG 3 cut(s) 228, 283, 367
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 2 cut(s) 138, 156
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 54, 308
Bst6I CTCTTC 1 cut(s) 230
BstBAI YACGTR 1 cut(s) 231
BstDEI CTNAG 2 cut(s) 174, 324
BstDSI CCRYGG 1 cut(s) 348
BstKTI GATC 2 cut(s) 141, 159
BstMBI GATC 2 cut(s) 138, 156
BstMCI CGRYCG 1 cut(s) 141
BstNI CCWGG 2 cut(s) 54, 308
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 2 cut(s) 52, 306
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuI GTATCC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 348
CsiI ACCWGGT 1 cut(s) 52
CviAII CATG 2 cut(s) 94, 349
CviJI RGCY 6 cut(s) 37, 105, 134, 173, 306, 341
CviKI_1 RGCY 6 cut(s) 37, 105, 134, 173, 306, 341
DdeI CTNAG 2 cut(s) 174, 324
DpnI GATC 2 cut(s) 140, 158
DpnII GATC 2 cut(s) 138, 156
DraIII CACNNNGTG 2 cut(s) 56, 336
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 306
Eco72I CACGTG 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 52, 306
EcoT14I CCWWGG 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 2 cut(s) 97, 352
FaiI YATR 6 cut(s) 62, 91, 95, 102, 275, 350
FaqI GGGAC 1 cut(s) 384
FatI CATG 2 cut(s) 93, 348
FspBI CTAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 306
Hin1II CATG 2 cut(s) 97, 352
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 2 cut(s) 191, 240
Hpy166II GTNNAC 2 cut(s) 28, 205
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 28, 205
HpyCH4IV ACGT 2 cut(s) 218, 230
HpyCH4V TGCA 1 cut(s) 382
HpyF3I CTNAG 2 cut(s) 174, 324
HpySE526I ACGT 2 cut(s) 218, 230
Hsp92II CATG 2 cut(s) 97, 352
Kzo9I GATC 2 cut(s) 138, 156
LpnPI CCDG 8 cut(s) 39, 66, 209, 279, 293, 296, 320, 348
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 1 cut(s) 131
MaeII ACGT 2 cut(s) 218, 230
MaeIII GTNAC 2 cut(s) 219, 386
MalI GATC 2 cut(s) 140, 158
MboI GATC 2 cut(s) 138, 156
MboII GAAGA 3 cut(s) 95, 209, 247
MfeI CAATTG 2 cut(s) 151, 164
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 4 cut(s) 20, 86, 151, 164
MnlI CCTC 5 cut(s) 103, 145, 163, 169, 289
MroXI GAANNNNTTC 1 cut(s) 239
MspR9I CCNGG 2 cut(s) 54, 308
MunI CAATTG 2 cut(s) 151, 164
MvaI CCWGG 2 cut(s) 54, 308
NcoI CCATGG 1 cut(s) 348
NdeII GATC 2 cut(s) 138, 156
NlaIII CATG 2 cut(s) 97, 352
NspI RCATGY 1 cut(s) 97
PceI AGGCCT 1 cut(s) 306
PciI ACATGT 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 191, 240
PflMI CCANNNNNTGG 1 cut(s) 354
Ple19I CGATCG 1 cut(s) 141
PmaCI CACGTG 1 cut(s) 231
PmlI CACGTG 1 cut(s) 231
Ppu21I YACGTR 1 cut(s) 231
PscI ACATGT 1 cut(s) 93
Psp1406I AACGTT 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 52, 306
PspCI CACGTG 1 cut(s) 231
PspGI CCWGG 2 cut(s) 52, 306
PsuI RGATCY 1 cut(s) 156
PvuI CGATCG 1 cut(s) 141
Sau3AI GATC 2 cut(s) 138, 156
ScrFI CCNGG 2 cut(s) 54, 308
SduI GDGCHC 1 cut(s) 330
SetI ASST 7 cut(s) 39, 58, 107, 221, 233, 300, 338
SexAI ACCWGGT 1 cut(s) 52
Sse9I AATT 4 cut(s) 20, 86, 151, 164
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 131
StuI AGGCCT 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 52, 306
StyI CCWWGG 1 cut(s) 348
TaiI ACGT 2 cut(s) 221, 233
TaqI TCGA 3 cut(s) 108, 137, 141
TasI AATT 4 cut(s) 20, 86, 151, 164
TfiI GAWTC 2 cut(s) 191, 240
TspDTI ATGAA 1 cut(s) 204
Van91I CCANNNNNTGG 1 cut(s) 354
XapI RAATTY 1 cut(s) 20
XceI RCATGY 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.