Prupe.8G185700_v2.0.a1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000203
Physical Location & Seq
Reverse (-)
18364619 .. 18365594
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G185700.1

Sequence Viewer

Length: 258 bp
ATGCTCCCTCAGCTAAGTTGCTTGGAACTTAGTGAGCTACCGTATCTCATAAGTTTTTCTCATGGAAAATATGCTTTCAAATGGCCATTAGTGGAAATGATCATTGTCGACGAATGTCCTGAAATGAAGAATTTCTGTTTAGGATCTCTTAGGACAGCAAAGGAAGTCAAAATAAGTATCAGTGGCGCTGGGGAGAATCTTTGGCAGGAGCTCAATGACAGTAGGGAAGAAAGCTGGTCTGCATTTTTAGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

86

Amino Acids

9.71

Weight (kDa)

4.58

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AclWI GGATC 2 cut(s) 151, 245
AcoI YGGCCR 1 cut(s) 83
AcsI RAATTY 1 cut(s) 130
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 4 cut(s) 13, 37, 211, 234
AluI AGCT 4 cut(s) 13, 37, 211, 234
Alw21I GWGCWC 1 cut(s) 213
AlwI GGATC 2 cut(s) 151, 245
AoxI GGCC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 130
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 188
BalI TGGCCA 1 cut(s) 85
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BbvCI CCTCAGC 1 cut(s) 9
BclI TGATCA 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 189
BoxI GACNNNNGTC 1 cut(s) 114
Bpu10I CCTNAGC 1 cut(s) 9
BseMII CTCAG 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 188
BshFI GGCC 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 213
BsnI GGCC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 3 cut(s) 99, 143, 250
BspANI GGCC 1 cut(s) 85
BspCNI CTCAG 1 cut(s) 22
BspPI GGATC 2 cut(s) 151, 245
BssMI GATC 3 cut(s) 99, 143, 250
Bst4CI ACNGT 2 cut(s) 42, 221
BstDEI CTNAG 4 cut(s) 9, 14, 29, 149
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 3 cut(s) 102, 146, 253
BstMBI GATC 3 cut(s) 99, 143, 250
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstPAI GACNNNNGTC 1 cut(s) 114
BstX2I RGATCY 2 cut(s) 143, 250
BstYI RGATCY 2 cut(s) 143, 250
BsuRI GGCC 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 187
CfoI GCGC 1 cut(s) 188
CviAII CATG 1 cut(s) 62
CviJI RGCY 5 cut(s) 13, 37, 85, 211, 234
CviKI_1 RGCY 5 cut(s) 13, 37, 85, 211, 234
DdeI CTNAG 4 cut(s) 9, 14, 29, 149
DpnI GATC 3 cut(s) 101, 145, 252
DpnII GATC 3 cut(s) 99, 143, 250
EaeI YGGCCR 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
EcoICRI GAGCTC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 1 cut(s) 65
FaiI YATR 4 cut(s) 50, 63, 72, 256
FatI CATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 99
FblI GTMKAC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 213
GlaI GCGC 1 cut(s) 187
GsaI CCCAGC 1 cut(s) 192
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 85
HhaI GCGC 1 cut(s) 188
Hin1II CATG 1 cut(s) 65
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 113
HpyCH4III ACNGT 2 cut(s) 42, 221
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 4 cut(s) 9, 14, 29, 149
Hsp92II CATG 1 cut(s) 65
HspAI GCGC 1 cut(s) 186
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 3 cut(s) 99, 143, 250
LmnI GCTCC 2 cut(s) 9, 208
LpnPI CCDG 4 cut(s) 132, 174, 191, 220
MalI GATC 3 cut(s) 101, 145, 252
MboI GATC 3 cut(s) 99, 143, 250
MboII GAAGA 2 cut(s) 139, 239
MflI RGATCY 2 cut(s) 143, 250
MhlI GDGCHC 1 cut(s) 213
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 1 cut(s) 130
MluNI TGGCCA 1 cut(s) 85
MnlI CCTC 1 cut(s) 18
Mox20I TGGCCA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 131
MscI TGGCCA 1 cut(s) 85
Msp20I TGGCCA 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 3 cut(s) 99, 143, 250
NlaIII CATG 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 196
PshAI GACNNNNGTC 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 188
PsuI RGATCY 2 cut(s) 143, 250
SacI GAGCTC 1 cut(s) 213
SalI GTCGAC 1 cut(s) 107
Sau3AI GATC 3 cut(s) 99, 143, 250
SduI GDGCHC 1 cut(s) 213
SetI ASST 4 cut(s) 15, 39, 213, 236
SgeI CNNG 6 cut(s) 34, 74, 131, 201, 218, 247
Sse9I AATT 1 cut(s) 130
SstI GAGCTC 1 cut(s) 213
TaaI ACNGT 2 cut(s) 42, 221
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 130
TfiI GAWTC 1 cut(s) 196
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 1 cut(s) 187
XapI RAATTY 1 cut(s) 130
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.