Rh7DG054600

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000203
Physical Location & Seq
Reverse (-)
4248764 .. 4252040
3277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG054600.1

Sequence Viewer

Length: 555 bp
ATGAAGAATTTAACAGAAACTCAAGCTCTGAATGTCTTAGATACGGTCTGTTTTGCAAAGATTAAGTCTCTTACACTTGAGGAGTGTGATGCTGTGGAGTATCTGATTGACACGACCCTTGTGAAACCTACTACTCCACATCGCAGCTGCGGCATCTTTCCTGTTTTGAATTCACTGGAGATCAGTTATGCAAGTAGACTGAAAGAGATTTTTCATGGTGAGCTGCCAACGCGGTTTCTCAAGGAAATACGAAGTTCGAAAATAGAATGCTGCTCCTCCTTGGAAGGGATTTTTGCCTTTGAAGATGATGAAAAGATGTTCAACTTCCAAAGTCTGACAGAATTGACTCTCTCAACACTACCAAGCTTCACTGGGATAAGCAAATATATCTCTAATGGGTCGGAACGGCTACTAGAAGACATAAGCCCAGAACAATCTGACATCATCATACAACCTCTGTTCGATACAAAGGGAAAAAGAATACTGCAATATCCTCAATGGTGGGGATTTCGTTCTGAAATATTTCTTCCCATACATTGCAACAAGAGAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

184

Amino Acids

21.05

Weight (kDa)

5.3

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 196
AccII CGCG 1 cut(s) 232
AciI CCGC 2 cut(s) 150, 232
AcsI RAATTY 2 cut(s) 7, 169
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 3 cut(s) 169, 302, 322
AluBI AGCT 4 cut(s) 26, 147, 223, 366
AluI AGCT 4 cut(s) 26, 147, 223, 366
Alw26I GTCTC 1 cut(s) 72
ApeKI GCWGC 4 cut(s) 144, 147, 223, 270
ApoI RAATTY 2 cut(s) 7, 169
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
Asp700I GAANNNNTTC 1 cut(s) 522
AsuHPI GGTGA 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 257
BbsI GAAGAC 1 cut(s) 423
BbvI GCAGC 4 cut(s) 134, 156, 210, 257
BceAI ACGGC 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 413
BisI GCNGC 5 cut(s) 145, 148, 151, 224, 271
BlsI GCNGC 5 cut(s) 146, 149, 152, 225, 272
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 2 cut(s) 79, 162
BmuI ACTGGG 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 197
Bpu14I TTCGAA 1 cut(s) 257
BpuEI CTTGAG 3 cut(s) 6, 98, 224
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 2 cut(s) 180, 376
Bse3DI GCAATG 1 cut(s) 535
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMI GCAATG 1 cut(s) 535
BseNI ACTGG 2 cut(s) 180, 376
BseRI GAGGAG 2 cut(s) 95, 265
BseXI GCAGC 4 cut(s) 134, 156, 210, 257
Bsh1236I CGCG 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 257
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 2 cut(s) 150, 232
BspFNI CGCG 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 535
BsrI ACTGG 2 cut(s) 180, 376
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 232
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 150, 229
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 4 cut(s) 134, 156, 210, 257
BstV2I GAAGAC 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 125
BtsIMutI CAGTG 2 cut(s) 173, 369
CviAII CATG 1 cut(s) 215
CviJI RGCY 6 cut(s) 26, 147, 223, 366, 409, 426
CviKI_1 RGCY 6 cut(s) 26, 147, 223, 366, 409, 426
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 1 cut(s) 218
FaiI YATR 7 cut(s) 189, 216, 387, 422, 449, 533, 553
FatI CATG 1 cut(s) 214
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 5 cut(s) 145, 148, 151, 224, 271
Fsp4HI GCNGC 5 cut(s) 145, 148, 151, 224, 271
FspBI CTAG 1 cut(s) 413
GluI GCNGC 5 cut(s) 145, 148, 151, 224, 271
GsuI CTGGAG 1 cut(s) 197
Hin1II CATG 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 364
HinfI GANTC 1 cut(s) 346
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 6 cut(s) 30, 105, 336, 403, 439, 517
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 4 cut(s) 56, 191, 487, 540
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 229
HpyF3I CTNAG 1 cut(s) 37
Hsp92II CATG 1 cut(s) 218
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 4 cut(s) 161, 174, 357, 441
Lsp1109I GCAGC 4 cut(s) 134, 156, 210, 257
LweI GCATC 2 cut(s) 79, 162
MaeI CTAG 1 cut(s) 413
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 4 cut(s) 16, 314, 428, 518
MluCI AATT 3 cut(s) 7, 169, 341
MlyI GAGTC 1 cut(s) 340
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 4 cut(s) 73, 286, 465, 504
MroXI GAANNNNTTC 1 cut(s) 522
MseI TTAA 2 cut(s) 11, 63
MspA1I CMGCKG 1 cut(s) 147
Mva1269I GAATGC 1 cut(s) 272
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 150, 229
NdeII GATC 1 cut(s) 180
NlaIII CATG 1 cut(s) 218
NspV TTCGAA 1 cut(s) 257
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 522
PkrI GCNGC 5 cut(s) 146, 149, 152, 225, 272
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 147
SaqAI TTAA 2 cut(s) 11, 63
SatI GCNGC 5 cut(s) 145, 148, 151, 224, 271
Sau3AI GATC 1 cut(s) 180
SchI GAGTC 1 cut(s) 340
SetI ASST 6 cut(s) 28, 130, 149, 225, 368, 457
SfaNI GCATC 2 cut(s) 79, 162
SfuI TTCGAA 1 cut(s) 257
SmlI CTYRAG 3 cut(s) 21, 77, 239
SmoI CTYRAG 3 cut(s) 21, 77, 239
Sse9I AATT 3 cut(s) 7, 169, 341
SsiI CCGC 2 cut(s) 150, 232
SspI AATATT 1 cut(s) 522
SspMI CTAG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 257, 462
TasI AATT 3 cut(s) 7, 169, 341
TauI GCSGC 1 cut(s) 153
Tru1I TTAA 2 cut(s) 11, 63
Tru9I TTAA 2 cut(s) 11, 63
TscAI CASTG 2 cut(s) 180, 376
TseI GCWGC 4 cut(s) 144, 147, 223, 270
TspDTI ATGAA 3 cut(s) 17, 203, 324
TspRI CASTG 2 cut(s) 180, 376
XapI RAATTY 2 cut(s) 7, 169
XmiI GTMKAC 1 cut(s) 196
XmnI GAANNNNTTC 1 cut(s) 522
XspI CTAG 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.