Rw5G037960

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000203
Physical Location & Seq
Reverse (-)
67017779 .. 67019958
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G037960.1

Sequence Viewer

Length: 966 bp
ATGAAGATGATGAGGAAGTGTCCAAAGTCTGACAGAGTTGACTCTATCAGATCTACCAAGCTTCACTGGGATAAGCAAAAATATCTCCAACTCTCCAAGGGGTCGGAAAGGCTACCAGAAGACATCAGCCCGGAACAATCTGACGTCATCAAACAACCTCTATTCGACACCAAGGTTCATTTCCCAGCCTTGACAAAAATATACATTAAATCCATGAACCTAACAGAGATATGGAACAACCAACTTTCTGCAGAATCCTTCGGTGAACTACGGGTGAGCGAATGTCCACTAAAATCTCTATGGGTGATGCCGGTGAGCGAATGTCAAATAAAATCTCTACGGGTGAGCGAATGTCACAAACCGTTGCGTTTGGTACCAGGATATATGCAAAATAGATTGCAGAAATTGGAATACATATGGGCATGGCACTGTTCTTCACTAGAAGATATTTTTGAATTTAGAAGATTGATCGTCGATGATGCAGGAGATGCTGCTGCTTTAACAATTTCTGAGTCAGGGAATCAAGGGACGCAAACGAACAAGATGATGTCTTTCAAACAATCTGGTCAAGCCTTTCACAATCTTAGACAGATATCAATTTTGTTTTGTGAAAGTTTGAGAACTCTGCTCTCTCCCTCAATTGCCAGAGGTCTCGTGAAGCTTCAAATGCTAATGATACGTAACTGCAAGAAGATTGAAGAAGTAGTTGCAACAGCAGCAGAGGGTGAAGAAACAAATGATGACACCTTGTTCCCTCAGCTATGTACCTTGACACTTGACGATCTACCAAATCTCAGAAGCTTTTCGCAAGGTAAAGATAATTTCAAATGGCCACCAGTGAAAAACATAAAAATCCTCAAATGCTACAATATGAAGAAGTTTTGTTTTGGATCCCTAAGCACACCAAAGGAAGTGAACATAGATGTCAAAGGTGCCGGTGAGAGTGTTTCTGCAGGAGCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

321

Amino Acids

36.55

Weight (kDa)

8.81

Isoelectric Point (pI)

58.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 89 - 156 2.6e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 190 - 230 3.4e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
Acc65I GGTACC 1 cut(s) 373
AccB1I GGYRCC 2 cut(s) 373, 932
AclWI GGATC 2 cut(s) 885, 898
AcoI YGGCCR 1 cut(s) 830
AcsI RAATTY 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 2 cut(s) 375, 766
AgsI TTSAA 5 cut(s) 455, 556, 665, 698, 826
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 5 cut(s) 61, 661, 760, 801, 959
AluI AGCT 5 cut(s) 61, 661, 760, 801, 959
Alw21I GWGCWC 1 cut(s) 961
Alw26I GTCTC 1 cut(s) 656
AlwI GGATC 2 cut(s) 885, 898
AoxI GGCC 1 cut(s) 830
ApeKI GCWGC 3 cut(s) 491, 494, 716
ApoI RAATTY 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 802
Asp718I GGTACC 1 cut(s) 373
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 7 cut(s) 275, 286, 316, 325, 355, 737, 950
BalI TGGCCA 1 cut(s) 832
BamHI GGATCC 1 cut(s) 890
BanI GGYRCC 2 cut(s) 373, 932
BanII GRGCYC 1 cut(s) 961
BauI CACGAG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 961
BbvCI CCTCAGC 1 cut(s) 756
BbvI GCAGC 3 cut(s) 478, 481, 728
BciT130I CCWGG 1 cut(s) 378
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 2 cut(s) 249, 951
BglII AGATCT 1 cut(s) 50
BisI GCNGC 3 cut(s) 492, 495, 717
BlsI GCNGC 3 cut(s) 493, 496, 718
Bme1390I CCNGG 2 cut(s) 131, 378
BmiI GGNNCC 3 cut(s) 375, 892, 934
BmrFI CCNGG 2 cut(s) 131, 378
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 3 cut(s) 297, 469, 478
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 126
Bpu10I CCTNAGC 2 cut(s) 756, 896
BpuMI CCSGG 1 cut(s) 131
BsaAI YACGTR 1 cut(s) 680
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 656
BsaJI CCNNGG 2 cut(s) 96, 171
Bse118I RCCGGY 2 cut(s) 310, 935
Bse1I ACTGG 2 cut(s) 71, 836
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 2 cut(s) 96, 171
BseMII CTCAG 3 cut(s) 501, 770, 808
BseNI ACTGG 2 cut(s) 71, 836
BseXI GCAGC 3 cut(s) 478, 481, 728
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 1 cut(s) 832
BshNI GGYRCC 2 cut(s) 373, 932
BsiHKAI GWGCWC 1 cut(s) 961
BsiSI CCGG 3 cut(s) 131, 311, 936
BslFI GGGAC 1 cut(s) 541
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 1 cut(s) 832
Bso31I GGTCTC 1 cut(s) 656
Bsp1286I GDGCHC 1 cut(s) 961
Bsp143I GATC 4 cut(s) 50, 468, 781, 890
BspANI GGCC 1 cut(s) 832
BspCNI CTCAG 3 cut(s) 502, 769, 807
BspLI GGNNCC 3 cut(s) 375, 892, 934
BspMAI CTGCAG 2 cut(s) 253, 955
BspPI GGATC 2 cut(s) 885, 898
BspT107I GGYRCC 2 cut(s) 373, 932
BspTNI GGTCTC 1 cut(s) 656
BsrFI RCCGGY 2 cut(s) 310, 935
BsrI ACTGG 2 cut(s) 71, 836
BssAI RCCGGY 2 cut(s) 310, 935
BssECI CCNNGG 2 cut(s) 96, 171
BssMI GATC 4 cut(s) 50, 468, 781, 890
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 653
BssT1I CCWWGG 2 cut(s) 96, 171
Bst2BI CACGAG 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 363, 431
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 488
BstBAI YACGTR 1 cut(s) 680
BstDEI CTNAG 5 cut(s) 510, 584, 756, 794, 896
BstKTI GATC 4 cut(s) 53, 471, 784, 893
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 4 cut(s) 50, 468, 781, 890
BstMWI GCNNNNNNNGC 3 cut(s) 488, 667, 716
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 2 cut(s) 129, 376
BstSFI CTRYAG 2 cut(s) 249, 951
BstSNI TACGTA 1 cut(s) 680
BstV1I GCAGC 3 cut(s) 478, 481, 728
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 2 cut(s) 50, 890
BstYI RGATCY 2 cut(s) 50, 890
BsuRI GGCC 1 cut(s) 832
BtsIMutI CAGTG 3 cut(s) 64, 427, 843
Cfr10I RCCGGY 2 cut(s) 310, 935
CseI GACGC 1 cut(s) 538
Csp6I GTAC 2 cut(s) 374, 765
CviAII CATG 2 cut(s) 214, 423
CviQI GTAC 2 cut(s) 374, 765
DdeI CTNAG 5 cut(s) 510, 584, 756, 794, 896
DpnI GATC 4 cut(s) 52, 470, 783, 892
DpnII GATC 4 cut(s) 50, 468, 781, 890
EaeI YGGCCR 1 cut(s) 830
Ecl136II GAGCTC 1 cut(s) 959
Eco105I TACGTA 1 cut(s) 680
Eco130I CCWWGG 2 cut(s) 96, 171
Eco24I GRGCYC 1 cut(s) 961
Eco31I GGTCTC 1 cut(s) 656
Eco32I GATATC 1 cut(s) 594
Eco53kI GAGCTC 1 cut(s) 959
EcoICRI GAGCTC 1 cut(s) 959
EcoRII CCWGG 1 cut(s) 376
EcoRV GATATC 1 cut(s) 594
EcoT14I CCWWGG 2 cut(s) 96, 171
EcoT38I GRGCYC 1 cut(s) 961
ErhI CCWWGG 2 cut(s) 96, 171
FaeI CATG 2 cut(s) 217, 426
FaqI GGGAC 1 cut(s) 541
FatI CATG 2 cut(s) 213, 422
FauNDI CATATG 1 cut(s) 416
Fnu4HI GCNGC 3 cut(s) 492, 495, 717
FriOI GRGCYC 1 cut(s) 961
Fsp4HI GCNGC 3 cut(s) 492, 495, 717
FspBI CTAG 1 cut(s) 440
GluI GCNGC 3 cut(s) 492, 495, 717
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 1 cut(s) 832
HapII CCGG 3 cut(s) 131, 311, 936
HgaI GACGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 217, 426
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 3 cut(s) 59, 659, 799
HinfI GANTC 4 cut(s) 41, 254, 512, 520
HpaII CCGG 3 cut(s) 131, 311, 936
HphI GGTGA 7 cut(s) 275, 286, 316, 325, 355, 737, 950
Hpy166II GTNNAC 4 cut(s) 40, 266, 287, 916
Hpy188I TCNGA 6 cut(s) 31, 50, 106, 142, 511, 797
Hpy188III TCNNGA 1 cut(s) 655
Hpy8I GTNNAC 4 cut(s) 40, 266, 287, 916
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 363, 431
HpyCH4IV ACGT 2 cut(s) 144, 679
HpyCH4V TGCA 7 cut(s) 251, 388, 400, 482, 687, 710, 953
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 667, 716
HpyF3I CTNAG 5 cut(s) 510, 584, 756, 794, 896
HpySE526I ACGT 2 cut(s) 144, 679
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 217, 426
KpnI GGTACC 1 cut(s) 377
Kzo9I GATC 4 cut(s) 50, 468, 781, 890
LmnI GCTCC 1 cut(s) 956
Lsp1109I GCAGC 3 cut(s) 478, 481, 728
LweI GCATC 3 cut(s) 297, 469, 478
MaeI CTAG 1 cut(s) 440
MaeII ACGT 2 cut(s) 144, 679
MaeIII GTNAC 2 cut(s) 353, 680
MalI GATC 4 cut(s) 52, 470, 783, 892
MboI GATC 4 cut(s) 50, 468, 781, 890
MboII GAAGA 9 cut(s) 16, 131, 426, 455, 474, 703, 710, 740, 886
MfeI CAATTG 1 cut(s) 639
MflI RGATCY 2 cut(s) 50, 890
MhlI GDGCHC 1 cut(s) 961
MlsI TGGCCA 1 cut(s) 832
MluCI AATT 6 cut(s) 404, 455, 504, 597, 639, 820
MluNI TGGCCA 1 cut(s) 832
MlyI GAGTC 2 cut(s) 35, 521
MmeI TCCRAC 2 cut(s) 84, 112
MnlI CCTC 7 cut(s) 6, 168, 641, 646, 715, 765, 866
Mox20I TGGCCA 1 cut(s) 832
MroXI GAANNNNTTC 1 cut(s) 802
MscI TGGCCA 1 cut(s) 832
MseI TTAA 2 cut(s) 207, 500
Msp20I TGGCCA 1 cut(s) 832
MspI CCGG 3 cut(s) 131, 311, 936
MspR9I CCNGG 2 cut(s) 131, 378
MunI CAATTG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 3 cut(s) 488, 667, 716
NciI CCSGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 416
NdeII GATC 4 cut(s) 50, 468, 781, 890
NlaIII CATG 2 cut(s) 217, 426
NlaIV GGNNCC 3 cut(s) 375, 892, 934
NmuCI GTSAC 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 802
PfeI GAWTC 2 cut(s) 254, 520
PkrI GCNGC 3 cut(s) 493, 496, 718
PleI GAGTC 2 cut(s) 35, 520
PpsI GAGTC 2 cut(s) 35, 520
Ppu21I YACGTR 1 cut(s) 680
Psp124BI GAGCTC 1 cut(s) 961
Psp6I CCWGG 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 3 cut(s) 375, 892, 934
PstI CTGCAG 2 cut(s) 253, 955
PsuI RGATCY 2 cut(s) 50, 890
RsaI GTAC 2 cut(s) 375, 766
RsaNI GTAC 2 cut(s) 374, 765
SacI GAGCTC 1 cut(s) 961
SaqAI TTAA 2 cut(s) 207, 500
SatI GCNGC 3 cut(s) 492, 495, 717
Sau3AI GATC 4 cut(s) 50, 468, 781, 890
SchI GAGTC 2 cut(s) 35, 521
ScrFI CCNGG 2 cut(s) 131, 378
SduI GDGCHC 1 cut(s) 961
SfaNI GCATC 3 cut(s) 297, 469, 478
SfcI CTRYAG 2 cut(s) 249, 951
SnaBI TACGTA 1 cut(s) 680
Sse9I AATT 6 cut(s) 404, 455, 504, 597, 639, 820
SspMI CTAG 1 cut(s) 440
SstI GAGCTC 1 cut(s) 961
StyD4I CCNGG 2 cut(s) 129, 376
StyI CCWWGG 2 cut(s) 96, 171
TaaI ACNGT 2 cut(s) 363, 431
TaiI ACGT 2 cut(s) 147, 682
TaqI TCGA 2 cut(s) 165, 474
TasI AATT 6 cut(s) 404, 455, 504, 597, 639, 820
TfiI GAWTC 2 cut(s) 254, 520
Tru1I TTAA 2 cut(s) 207, 500
Tru9I TTAA 2 cut(s) 207, 500
TscAI CASTG 3 cut(s) 71, 434, 843
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 3 cut(s) 491, 494, 716
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 4 cut(s) 17, 167, 230, 887
TspRI CASTG 3 cut(s) 71, 434, 843
XapI RAATTY 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 802
XspI CTAG 1 cut(s) 440
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.