RLG00000010935

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000203
Physical Location & Seq
Forward (+)
5502001 .. 5502840
840 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010935

Sequence Viewer

Length: 750 bp
ATGTCGGAAAGCTTTTACAATTGGGTGGTTGATAAACTAGTCTCGACCGAAACAACTAATTGGATCTCTCAATTGGAGGCTGAAGAAAGAGCTAGATCCGAAGAAGTGAACAAGTGGAAAAGAATCAACACGTTAGCGGCTGAACAACCAGCCAACCCAGAGAAGATTAATGGGCTTCTTGAAGAATGTGAAGAGATGAGAAGGTGGGCCAAGTCCATGCACTGGACAAGTGGGATACTTTCAGATCTACTTTCCTTGTCCGGTTTGACTCGTTTAAGTGTTGTTCTACCACCACTTGATATTCTGCTAACAACCGATGTATTGGTCAAGAAACTTGAAAGATTTCAGATCTCTTTACGATGGACTAATCCATCGAGATTTACTGTCCCGCCTTCTGAGAACTACTTGGGAGTTTTTGATCTTGATGCAAGCTCACTCGTGGCTAGTAATATCAGTTGGTTGCTAAACAAAACTAACACTCTTGCGTTAAGCATGAAGAATTTGACAGATCCTCTGAATGTCTTCGATTTTGCAAGCTTGAAGTCTCTTACACTCGACGGCTGTGATGCTCTGGAATATCTGATTGACGTGACACATGTAAACCCTGCTACTCCACGCAGTACCGTCTTTCCGGTCTTGGAGTCACTGACTATCGATGGCGCAGCAAGGCTCAAGGAGATTTGTCATGGTGAACTGCTCCACACCGAGAGTTTAGTTTATCTTTACTCCTGCTTGTTGGTTACACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

250

Amino Acids

28.06

Weight (kDa)

4.94

Isoelectric Point (pI)

52.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 222
AciI CCGC 2 cut(s) 137, 389
AclWI GGATC 3 cut(s) 71, 90, 503
AcsI RAATTY 1 cut(s) 499
AcuI CTGAAG 1 cut(s) 102
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 1 cut(s) 222
AflIII ACRYGT 2 cut(s) 129, 595
AgsI TTSAA 3 cut(s) 182, 338, 541
AhlI ACTAGT 1 cut(s) 37
AjiI CACGTC 1 cut(s) 589
AluBI AGCT 4 cut(s) 12, 92, 432, 537
AluI AGCT 4 cut(s) 12, 92, 432, 537
Alw26I GTCTC 2 cut(s) 46, 549
AlwI GGATC 3 cut(s) 71, 90, 503
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 662
ApoI RAATTY 1 cut(s) 499
AseI ATTAAT 1 cut(s) 168
Asp700I GAANNNNTTC 2 cut(s) 342, 521
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 701
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 514
BbvI GCAGC 1 cut(s) 674
BccI CCATC 3 cut(s) 354, 379, 650
BceAI ACGGC 1 cut(s) 574
BciVI GTATCC 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 46, 549
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 3 cut(s) 38, 93, 444
BfuI GTATCC 1 cut(s) 228
BglII AGATCT 2 cut(s) 244, 348
BisI GCNGC 2 cut(s) 138, 663
BlsI GCNGC 2 cut(s) 139, 664
BmgBI CACGTC 1 cut(s) 589
BmgT120I GGNCC 1 cut(s) 207
BmsI GCATC 2 cut(s) 415, 556
BpiI GAAGAC 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 656
Bsa29I ATCGAT 1 cut(s) 654
BsaWI WCCGGW 2 cut(s) 260, 631
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 654
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 674
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 1 cut(s) 209
BshVI ATCGAT 1 cut(s) 654
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 2 cut(s) 261, 632
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 46, 549
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 1 cut(s) 209
Bsp143I GATC 6 cut(s) 63, 95, 244, 348, 418, 508
BspACI CCGC 2 cut(s) 137, 389
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 388
BspDI ATCGAT 1 cut(s) 654
BspPI GGATC 3 cut(s) 71, 90, 503
BsrI ACTGG 1 cut(s) 227
BssMI GATC 6 cut(s) 63, 95, 244, 348, 418, 508
BssSI CACGAG 1 cut(s) 437
Bst2BI CACGAG 1 cut(s) 437
Bst4CI ACNGT 2 cut(s) 385, 625
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 430, 535
BstDEI CTNAG 1 cut(s) 396
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 6 cut(s) 66, 98, 247, 351, 421, 511
BstMAI GTCTC 2 cut(s) 46, 549
BstMBI GATC 6 cut(s) 63, 95, 244, 348, 418, 508
BstMCI CGRYCG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 599
BstV1I GCAGC 1 cut(s) 674
BstV2I GAAGAC 1 cut(s) 514
BstX2I RGATCY 5 cut(s) 63, 95, 244, 348, 508
BstYI RGATCY 5 cut(s) 63, 95, 244, 348, 508
Bsu15I ATCGAT 1 cut(s) 654
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 209
BsuTUI ATCGAT 1 cut(s) 654
BtrI CACGTC 1 cut(s) 589
BtsIMutI CAGTG 2 cut(s) 220, 644
Cac8I GCNNGC 2 cut(s) 430, 535
CfoI GCGC 1 cut(s) 662
Cfr13I GGNCC 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 654
Csp6I GTAC 1 cut(s) 621
CviAII CATG 4 cut(s) 217, 493, 596, 686
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 1 cut(s) 396
DpnI GATC 6 cut(s) 65, 97, 246, 350, 420, 510
DpnII GATC 6 cut(s) 63, 95, 244, 348, 418, 508
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 102
FaeI CATG 4 cut(s) 220, 496, 599, 689
FaiI YATR 4 cut(s) 218, 494, 597, 687
FaqI GGGAC 1 cut(s) 371
FatI CATG 4 cut(s) 216, 492, 595, 685
FauI CCCGC 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 138, 663
Fsp4HI GCNGC 2 cut(s) 138, 663
FspBI CTAG 3 cut(s) 38, 93, 444
GlaI GCGC 1 cut(s) 661
GluI GCNGC 2 cut(s) 138, 663
HaeIII GGCC 1 cut(s) 209
HapII CCGG 2 cut(s) 261, 632
HhaI GCGC 1 cut(s) 662
Hin1II CATG 4 cut(s) 220, 496, 599, 689
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HindIII AAGCTT 2 cut(s) 10, 535
HinfI GANTC 3 cut(s) 123, 268, 641
HpaII CCGG 2 cut(s) 261, 632
HphI GGTGA 1 cut(s) 701
Hpy166II GTNNAC 3 cut(s) 109, 601, 692
Hpy188I TCNGA 7 cut(s) 7, 100, 244, 348, 397, 516, 582
Hpy188III TCNNGA 6 cut(s) 43, 179, 328, 375, 422, 572
Hpy8I GTNNAC 3 cut(s) 109, 601, 692
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 2 cut(s) 195, 402
HpyCH4III ACNGT 2 cut(s) 385, 625
HpyCH4IV ACGT 2 cut(s) 131, 588
HpyCH4V TGCA 3 cut(s) 220, 428, 533
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 2 cut(s) 131, 588
Hsp92II CATG 4 cut(s) 220, 496, 599, 689
HspAI GCGC 1 cut(s) 660
Kzo9I GATC 6 cut(s) 63, 95, 244, 348, 418, 508
LmnI GCTCC 1 cut(s) 702
LpnPI CCDG 8 cut(s) 162, 171, 208, 274, 557, 618, 645, 742
Lsp1109I GCAGC 1 cut(s) 674
LweI GCATC 2 cut(s) 415, 556
MaeI CTAG 3 cut(s) 38, 93, 444
MaeII ACGT 2 cut(s) 131, 588
MaeIII GTNAC 3 cut(s) 589, 642, 739
MalI GATC 6 cut(s) 65, 97, 246, 350, 420, 510
MboI GATC 6 cut(s) 63, 95, 244, 348, 418, 508
MboII GAAGA 7 cut(s) 95, 113, 175, 194, 203, 508, 514
MfeI CAATTG 2 cut(s) 19, 71
MflI RGATCY 5 cut(s) 63, 95, 244, 348, 508
MluCI AATT 4 cut(s) 19, 58, 71, 499
MlyI GAGTC 2 cut(s) 262, 650
MnlI CCTC 2 cut(s) 70, 522
MroXI GAANNNNTTC 2 cut(s) 342, 521
MseI TTAA 4 cut(s) 168, 275, 488, 748
MspI CCGG 2 cut(s) 261, 632
MunI CAATTG 2 cut(s) 19, 71
NdeII GATC 6 cut(s) 63, 95, 244, 348, 418, 508
NlaIII CATG 4 cut(s) 220, 496, 599, 689
NmuCI GTSAC 2 cut(s) 589, 642
NspI RCATGY 1 cut(s) 599
PciI ACATGT 1 cut(s) 595
PdmI GAANNNNTTC 2 cut(s) 342, 521
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 1 cut(s) 222
PkrI GCNGC 2 cut(s) 139, 664
PleI GAGTC 2 cut(s) 262, 649
PpsI GAGTC 2 cut(s) 262, 649
PscI ACATGT 1 cut(s) 595
PshBI ATTAAT 1 cut(s) 168
PspPI GGNCC 1 cut(s) 207
PsuI RGATCY 5 cut(s) 63, 95, 244, 348, 508
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SaqAI TTAA 4 cut(s) 168, 275, 488, 748
SatI GCNGC 2 cut(s) 138, 663
Sau3AI GATC 6 cut(s) 63, 95, 244, 348, 418, 508
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 2 cut(s) 262, 650
SetI ASST 7 cut(s) 14, 94, 134, 206, 434, 539, 591
SfaNI GCATC 2 cut(s) 415, 556
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 4 cut(s) 19, 58, 71, 499
SsiI CCGC 2 cut(s) 137, 389
SspMI CTAG 3 cut(s) 38, 93, 444
TaaI ACNGT 2 cut(s) 385, 625
TaiI ACGT 2 cut(s) 134, 591
TaqI TCGA 5 cut(s) 44, 374, 525, 555, 654
TaqII GACCGA 1 cut(s) 62
TasI AATT 4 cut(s) 19, 58, 71, 499
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 4 cut(s) 168, 275, 488, 748
Tru9I TTAA 4 cut(s) 168, 275, 488, 748
TscAI CASTG 2 cut(s) 227, 651
TseFI GTSAC 2 cut(s) 589, 642
TseI GCWGC 1 cut(s) 662
Tsp45I GTSAC 2 cut(s) 589, 642
TspDTI ATGAA 1 cut(s) 509
TspRI CASTG 2 cut(s) 227, 651
Van91I CCANNNNNTGG 1 cut(s) 222
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 1 cut(s) 499
XceI RCATGY 1 cut(s) 599
XmnI GAANNNNTTC 2 cut(s) 342, 521
XspI CTAG 3 cut(s) 38, 93, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.