Rh6AG447600

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000203
Physical Location & Seq
Reverse (-)
63421961 .. 63425838
3878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG447600.1

Sequence Viewer

Length: 1023 bp
ATGGACGTTATTCTGGCATTGGTACAACCATTGGCACAACCATTGGCAGAATGGGCAGTGAAACCAATTCGGCGACGCTTGAGTTATGTGTTTCACTACAAGAGCAACATTGAGCATCTCAACGAACAGGTTGTGCAGCTGCGTGAAAAGAGAGAAGGAGTGGACCTGGAGGTGAAACCTGCGCAAGATGCTTTAATGACTATTGATCCCAGAGTTGATCGCTGGCTGGGCGAGGTACACAGAGTCTTAGAAGAAAAGGACAAGGAGACGTGTTTCAGTGAAGAAAATGTAGCGGCAAAGGCAGCGTGCTGTAATGGGTGGCTTCCAAATATCAAGTGCCGTTATTCTTTGGGAAAGAAAGCTAAAAAGATGACTGAGAAAGTGGATAATCTTCTTGCTGAAAATCTCGGGACTATAGCGCATCCTGCTTCTCACCCAGAGGTGGAATTCCAACCCGGAAGCAACTTCCATGAAGGTGCCAGCTCCTCTGCAGGAACATCAACCCAAGAACAGCCACCTGCATCTGTAGGAAAGATTATTAATTTTGATTCGAGGATAACAACCATTAGAGATGTGACGGAAGCTCTCAAGGGGGATCAATTCAATCCGATTATCATTTGCGGCATGGGCGGCATCGGGAAGACAACATTGATGGGGCAAGTCTTTGACAAAGCAAAGGAAGAAGGTCTGTTCGATGAGTATACAAAGGCAACCTTATCTCTTGACAAAGCTCCTGACGTGATTCAGATTCAAGGCGAACTTGCAGAATATCTAGGCAAGAACATCTTTGAGGATGAAAAAGAGAGAGGTCCAAGAGCAAGTAAGCTACGTGCAAGATTATCCCAAGGCAGCAAGAAGATCCTTGTAATGTTAGACAATGTTTCCACAACAACCCCAGACTTTTTGTGGGACATAGGGATTCCCCTTAGTTGTAAACTTTTGGTGACATCAAGACAACAAGATCTATTCAAGGACATGGACACAAGAAAGAATTTCCCCATTCATGGGCCCTCTAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

340

Amino Acids

37.99

Weight (kDa)

6.42

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 188 - 329 2.1e-16 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc16I TGCGCA 1 cut(s) 183
Acc36I ACCTGC 2 cut(s) 187, 526
AccB1I GGYRCC 1 cut(s) 476
AccI GTMKAC 1 cut(s) 701
AciI CCGC 3 cut(s) 293, 621, 630
AclWI GGATC 3 cut(s) 200, 603, 853
AcsI RAATTY 2 cut(s) 446, 991
AfaI GTAC 2 cut(s) 24, 237
AfiI CCNNNNNNNGG 3 cut(s) 442, 1004, 1005
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 3 cut(s) 604, 752, 970
AjiI CACGTC 2 cut(s) 270, 739
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 6 cut(s) 139, 362, 483, 584, 731, 826
AluI AGCT 6 cut(s) 139, 362, 483, 584, 731, 826
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 3 cut(s) 200, 603, 853
Ama87I CYCGRG 1 cut(s) 407
AoxI GGCC 1 cut(s) 1007
ApaI GGGCCC 1 cut(s) 1011
ApeKI GCWGC 4 cut(s) 136, 139, 302, 849
ApoI RAATTY 2 cut(s) 446, 991
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 2 cut(s) 184, 421
AspS9I GGNCC 4 cut(s) 163, 809, 1007, 1008
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 3 cut(s) 184, 425, 955
AvaI CYCGRG 1 cut(s) 407
AvaII GGWCC 2 cut(s) 163, 809
BaeGI GKGCMC 1 cut(s) 1011
BanI GGYRCC 1 cut(s) 476
BanII GRGCYC 1 cut(s) 1011
BbsI GAAGAC 1 cut(s) 647
BbvI GCAGC 4 cut(s) 126, 148, 314, 861
BccI CCATC 1 cut(s) 646
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 773
BfmI CTRYAG 3 cut(s) 414, 489, 525
BfuAI ACCTGC 2 cut(s) 187, 526
BglII AGATCT 1 cut(s) 961
BisI GCNGC 7 cut(s) 137, 140, 294, 303, 622, 631, 850
BlsI GCNGC 7 cut(s) 138, 141, 295, 304, 623, 632, 851
Bme1390I CCNGG 2 cut(s) 167, 456
Bme18I GGWCC 2 cut(s) 163, 809
BmeT110I CYCGRG 1 cut(s) 407
BmgBI CACGTC 2 cut(s) 270, 739
BmgT120I GGNCC 4 cut(s) 163, 809, 1007, 1008
BmiI GGNNCC 2 cut(s) 478, 1009
BmrFI CCNGG 2 cut(s) 167, 456
BmsI GCATC 5 cut(s) 124, 178, 430, 530, 642
BpiI GAAGAC 1 cut(s) 647
BpmI CTGGAG 1 cut(s) 188
BpuEI CTTGAG 2 cut(s) 100, 572
BpuMI CCSGG 1 cut(s) 456
BsaAI YACGTR 1 cut(s) 830
BsaJI CCNNGG 1 cut(s) 844
Bsc4I CCNNNNNNNGG 3 cut(s) 442, 1004, 1005
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 844
BseGI GGATG 2 cut(s) 421, 799
BseLI CCNNNNNNNGG 3 cut(s) 442, 1004, 1005
BseMII CTCAG 1 cut(s) 366
BseRI GAGGAG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 1011
BseXI GCAGC 4 cut(s) 126, 148, 314, 861
BseYI CCCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 1009
BshNI GGYRCC 1 cut(s) 476
BsiHKCI CYCGRG 1 cut(s) 407
BsiSI CCGG 1 cut(s) 456
BslFI GGGAC 2 cut(s) 424, 923
BslI CCNNNNNNNGG 3 cut(s) 442, 1004, 1005
BsmAI GTCTC 1 cut(s) 260
BsmBI CGTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 424, 923
BsnI GGCC 1 cut(s) 1009
BsoBI CYCGRG 1 cut(s) 407
Bsp120I GGGCCC 1 cut(s) 1007
Bsp1286I GDGCHC 1 cut(s) 1011
Bsp143I GATC 5 cut(s) 205, 217, 595, 858, 961
BspACI CCGC 3 cut(s) 293, 621, 630
BspANI GGCC 1 cut(s) 1009
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 2 cut(s) 478, 1009
BspMAI CTGCAG 1 cut(s) 493
BspMI ACCTGC 2 cut(s) 187, 526
BspPI GGATC 3 cut(s) 200, 603, 853
BspT107I GGYRCC 1 cut(s) 476
BssECI CCNNGG 1 cut(s) 844
BssMI GATC 5 cut(s) 205, 217, 595, 858, 961
BssNAI GTATAC 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 844
Bst1107I GTATAC 1 cut(s) 702
Bst2UI CCWGG 1 cut(s) 167
BstBAI YACGTR 1 cut(s) 830
BstC8I GCNNGC 3 cut(s) 224, 307, 481
BstDEI CTNAG 3 cut(s) 247, 375, 926
BstF5I GGATG 2 cut(s) 421, 799
BstHHI GCGC 2 cut(s) 184, 421
BstKTI GATC 5 cut(s) 208, 220, 598, 861, 964
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 5 cut(s) 205, 217, 595, 858, 961
BstMWI GCNNNNNNNGC 8 cut(s) 53, 188, 228, 299, 302, 425, 627, 630
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 165, 454
BstSFI CTRYAG 3 cut(s) 414, 489, 525
BstSLI GKGCMC 1 cut(s) 1011
BstV1I GCAGC 4 cut(s) 126, 148, 314, 861
BstV2I GAAGAC 1 cut(s) 647
BstX2I RGATCY 2 cut(s) 858, 961
BstYI RGATCY 2 cut(s) 858, 961
BstZ17I GTATAC 1 cut(s) 702
BsuRI GGCC 1 cut(s) 1009
BtrI CACGTC 2 cut(s) 270, 739
BtsCI GGATG 2 cut(s) 421, 799
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 2 cut(s) 63, 283
BveI ACCTGC 2 cut(s) 187, 526
Cac8I GCNNGC 3 cut(s) 224, 307, 481
CfoI GCGC 2 cut(s) 184, 421
Cfr13I GGNCC 4 cut(s) 163, 809, 1007, 1008
CseI GACGC 1 cut(s) 84
Csp6I GTAC 2 cut(s) 23, 236
CviAII CATG 4 cut(s) 470, 625, 976, 1004
CviQI GTAC 2 cut(s) 23, 236
DdeI CTNAG 3 cut(s) 247, 375, 926
DpnI GATC 5 cut(s) 207, 219, 597, 860, 963
DpnII GATC 5 cut(s) 205, 217, 595, 858, 961
Eco130I CCWWGG 1 cut(s) 844
Eco24I GRGCYC 1 cut(s) 1011
Eco47I GGWCC 2 cut(s) 163, 809
Eco88I CYCGRG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 1008
EcoRI GAATTC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 844
EcoT38I GRGCYC 1 cut(s) 1011
ErhI CCWWGG 1 cut(s) 844
Esp3I CGTCTC 1 cut(s) 260
FaeI CATG 4 cut(s) 473, 628, 979, 1007
FaiI YATR 8 cut(s) 87, 416, 471, 626, 702, 914, 977, 1005
FalI AAGNNNNNCTT 6 cut(s) 698, 730, 744, 776, 770, 802
FaqI GGGAC 2 cut(s) 424, 923
FatI CATG 4 cut(s) 469, 624, 975, 1003
FblI GTMKAC 1 cut(s) 701
Fnu4HI GCNGC 7 cut(s) 137, 140, 294, 303, 622, 631, 850
FokI GGATG 2 cut(s) 408, 806
FriOI GRGCYC 1 cut(s) 1011
Fsp4HI GCNGC 7 cut(s) 137, 140, 294, 303, 622, 631, 850
FspBI CTAG 1 cut(s) 773
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 2 cut(s) 183, 420
GluI GCNGC 7 cut(s) 137, 140, 294, 303, 622, 631, 850
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 1 cut(s) 1009
HapII CCGG 1 cut(s) 456
HgaI GACGC 1 cut(s) 84
HhaI GCGC 2 cut(s) 184, 421
Hin1II CATG 4 cut(s) 473, 628, 979, 1007
Hin6I GCGC 2 cut(s) 182, 419
HinP1I GCGC 2 cut(s) 182, 419
HinfI GANTC 5 cut(s) 243, 548, 742, 748, 919
HpaII CCGG 1 cut(s) 456
HphI GGTGA 3 cut(s) 184, 425, 955
Hpy166II GTNNAC 4 cut(s) 163, 238, 702, 935
Hpy188I TCNGA 2 cut(s) 609, 747
Hpy188III TCNNGA 5 cut(s) 409, 637, 722, 734, 951
Hpy8I GTNNAC 4 cut(s) 163, 238, 702, 935
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 3 cut(s) 149, 467, 677
HpyCH4IV ACGT 4 cut(s) 6, 269, 738, 829
HpyCH4V TGCA 5 cut(s) 136, 491, 521, 764, 833
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 188, 228, 299, 302, 425, 627, 630
HpyF3I CTNAG 3 cut(s) 247, 375, 926
HpySE526I ACGT 4 cut(s) 6, 269, 738, 829
Hsp92II CATG 4 cut(s) 473, 628, 979, 1007
HspAI GCGC 2 cut(s) 182, 419
Kzo9I GATC 5 cut(s) 205, 217, 595, 858, 961
LmnI GCTCC 2 cut(s) 488, 736
Lsp1109I GCAGC 4 cut(s) 126, 148, 314, 861
LweI GCATC 5 cut(s) 124, 178, 430, 530, 642
MaeI CTAG 1 cut(s) 773
MaeII ACGT 4 cut(s) 6, 269, 738, 829
MaeIII GTNAC 2 cut(s) 574, 943
MalI GATC 5 cut(s) 207, 219, 597, 860, 963
MboI GATC 5 cut(s) 205, 217, 595, 858, 961
MboII GAAGA 6 cut(s) 263, 293, 383, 652, 692, 868
MflI RGATCY 2 cut(s) 858, 961
MhlI GDGCHC 1 cut(s) 1011
MluCI AATT 5 cut(s) 66, 446, 541, 599, 991
MlyI GAGTC 1 cut(s) 252
MmeI TCCRAC 1 cut(s) 475
MnlI CCTC 8 cut(s) 163, 226, 433, 496, 546, 784, 800, 1021
MseI TTAA 2 cut(s) 194, 540
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 1 cut(s) 456
MspR9I CCNGG 2 cut(s) 167, 456
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 8 cut(s) 53, 188, 228, 299, 302, 425, 627, 630
NciI CCSGG 1 cut(s) 456
NdeII GATC 5 cut(s) 205, 217, 595, 858, 961
NlaIII CATG 4 cut(s) 473, 628, 979, 1007
NlaIV GGNNCC 2 cut(s) 478, 1009
NmuCI GTSAC 2 cut(s) 574, 943
NsbI TGCGCA 1 cut(s) 183
PaqCI CACCTGC 1 cut(s) 526
PfeI GAWTC 4 cut(s) 548, 742, 748, 919
PkrI GCNGC 7 cut(s) 138, 141, 295, 304, 623, 632, 851
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 830
PshBI ATTAAT 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 478, 1009
PspOMI GGGCCC 1 cut(s) 1007
PspPI GGNCC 4 cut(s) 163, 809, 1007, 1008
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 2 cut(s) 858, 961
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 2 cut(s) 24, 237
RsaNI GTAC 2 cut(s) 23, 236
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 2 cut(s) 194, 540
SatI GCNGC 7 cut(s) 137, 140, 294, 303, 622, 631, 850
Sau3AI GATC 5 cut(s) 205, 217, 595, 858, 961
Sau96I GGNCC 4 cut(s) 163, 809, 1007, 1008
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 167, 456
SduI GDGCHC 1 cut(s) 1011
SfaNI GCATC 5 cut(s) 124, 178, 430, 530, 642
SfcI CTRYAG 3 cut(s) 414, 489, 525
SinI GGWCC 2 cut(s) 163, 809
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 79, 587
SmoI CTYRAG 2 cut(s) 79, 587
Sse9I AATT 5 cut(s) 66, 446, 541, 599, 991
SsiI CCGC 3 cut(s) 293, 621, 630
SspMI CTAG 1 cut(s) 773
StyD4I CCNGG 2 cut(s) 165, 454
StyI CCWWGG 1 cut(s) 844
TaiI ACGT 4 cut(s) 9, 272, 741, 832
TaqI TCGA 2 cut(s) 551, 693
TasI AATT 5 cut(s) 66, 446, 541, 599, 991
TauI GCSGC 3 cut(s) 296, 624, 633
TfiI GAWTC 4 cut(s) 548, 742, 748, 919
Tru1I TTAA 2 cut(s) 194, 540
Tru9I TTAA 2 cut(s) 194, 540
TscAI CASTG 2 cut(s) 63, 283
TseFI GTSAC 2 cut(s) 574, 943
TseI GCWGC 4 cut(s) 136, 139, 302, 849
Tsp45I GTSAC 2 cut(s) 574, 943
TspDTI ATGAA 3 cut(s) 486, 810, 992
TspGWI ACGGA 1 cut(s) 593
TspRI CASTG 2 cut(s) 63, 283
VpaK11BI GGWCC 2 cut(s) 163, 809
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 2 cut(s) 446, 991
XcmI CCANNNNNNNNNTGG 2 cut(s) 48, 903
XmiI GTMKAC 1 cut(s) 701
XspI CTAG 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.