Rmu_sc0016179.1_g000009

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016179.1
OG0000203
Physical Location & Seq
Reverse (-)
30521 .. 31168
648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016179.1_g000009.1.cds

Sequence Viewer

Length: 648 bp
atggaggttgaggaaagaccggcatccaaagaagtagaccgctgggaaacgacactggacacgtggaagagattcaacaaattagcagctgagcaaccaacaaacgtagggaagcaatttagagaagaggttcaaggtctccttagagcaaacgatgagcaaacaaggtgggccagccccatggactggaaaactggtatacttgcggagctactttccttgtcccatttgactactttagaagtttttctaccactggttagtgagatactaaccagcaatttatttaacaagctggaaagatttaagttctctataggatggaagcaccctatgtataattgggaactaaagcataatgacaactacttgggagttcacgatcttaatgcaagcgctactgtgggtagtggaatcactttgttgctaaagaaaaccagcattcttgagtttagaatgaagaatatgaccaaacctcaagctctgaatgtcttagatacagatcagtaccatttcgcaaagatgaagtctcttacactaaaggagtgtgaagctgtgaagtatcggattgacaggacactttcgaaacataatactccacataccagcagcggcctctttcctgtgttgaattcactagtgaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

215

Amino Acids

24.85

Weight (kDa)

8.87

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 186
AccI GTMKAC 2 cut(s) 36, 199
AciI CCGC 3 cut(s) 40, 206, 612
AcsI RAATTY 1 cut(s) 631
AcvI CACGTG 1 cut(s) 63
AfaI GTAC 1 cut(s) 509
AfeI AGCGCT 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 3 cut(s) 76, 134, 631
AhlI ACTAGT 1 cut(s) 637
AluBI AGCT 5 cut(s) 89, 211, 295, 482, 554
AluI AGCT 5 cut(s) 89, 211, 295, 482, 554
Alw26I GTCTC 2 cut(s) 143, 534
Aor51HI AGCGCT 1 cut(s) 397
AoxI GGCC 2 cut(s) 171, 613
ApeKI GCWGC 2 cut(s) 86, 609
ApoI RAATTY 1 cut(s) 631
ArsI GACNNNNNNTTYG 2 cut(s) 512, 544
Asp700I GAANNNNTTC 3 cut(s) 71, 129, 246
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 171
AsuII TTCGAA 1 cut(s) 584
BarI GAAGNNNNNNTAC 2 cut(s) 234, 266
BbrPI CACGTG 1 cut(s) 63
BbvI GCAGC 2 cut(s) 98, 621
BccI CCATC 1 cut(s) 315
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BcoDI GTCTC 2 cut(s) 143, 534
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 399
BisI GCNGC 3 cut(s) 87, 610, 613
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 3 cut(s) 88, 611, 614
BmgT120I GGNCC 1 cut(s) 171
BmsI GCATC 1 cut(s) 32
Bpu1102I GCTNAGC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 584
BpuEI CTTGAG 2 cut(s) 462, 467
BsaAI YACGTR 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 4 cut(s) 60, 191, 199, 261
Bse8I GATNNNNATC 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 2 cut(s) 23, 326
BseJI GATNNNNATC 1 cut(s) 501
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 4 cut(s) 60, 191, 199, 261
BseXI GCAGC 2 cut(s) 98, 621
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 2 cut(s) 173, 615
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 143, 534
BsmFI GGGAC 1 cut(s) 208
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 2 cut(s) 173, 615
Bso31I GGTCTC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 584
Bsp143I GATC 2 cut(s) 382, 502
Bsp1720I GCTNAGC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 3 cut(s) 40, 206, 612
BspANI GGCC 2 cut(s) 173, 615
BspCNI CTCAG 1 cut(s) 82
BspT104I TTCGAA 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 4 cut(s) 60, 191, 199, 261
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 2 cut(s) 382, 502
BssNAI GTATAC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 180
Bst1107I GTATAC 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 2 cut(s) 62, 120
BstBAI YACGTR 1 cut(s) 63
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 175, 394
BstDEI CTNAG 3 cut(s) 90, 143, 493
BstDSI CCRYGG 1 cut(s) 180
BstF5I GGATG 2 cut(s) 23, 326
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 2 cut(s) 385, 505
BstMAI GTCTC 2 cut(s) 143, 534
BstMBI GATC 2 cut(s) 382, 502
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 98, 621
BstXI CCANNNNNNTGG 1 cut(s) 181
BstZ17I GTATAC 1 cut(s) 200
BsuRI GGCC 2 cut(s) 173, 615
BtgI CCRYGG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 23, 326
BtsIMutI CAGTG 2 cut(s) 53, 254
Cac8I GCNNGC 2 cut(s) 175, 394
CfoI GCGC 1 cut(s) 398
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 508
CspCI CAANNNNNGTGG 2 cut(s) 149, 184
CviAII CATG 1 cut(s) 181
CviJI RGCY 8 cut(s) 89, 173, 177, 211, 295, 482, 554, 615
CviKI_1 RGCY 8 cut(s) 89, 173, 177, 211, 295, 482, 554, 615
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 3 cut(s) 90, 143, 493
DpnI GATC 2 cut(s) 384, 504
DpnII GATC 2 cut(s) 382, 502
Eam1104I CTCTTC 2 cut(s) 62, 120
EarI CTCTTC 2 cut(s) 62, 120
Eco130I CCWWGG 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 143
Eco47III AGCGCT 1 cut(s) 397
Eco72I CACGTG 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 184
FaiI YATR 9 cut(s) 182, 200, 317, 335, 339, 357, 467, 591, 603
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 1 cut(s) 208
FatI CATG 1 cut(s) 180
FblI GTMKAC 2 cut(s) 36, 199
Fnu4HI GCNGC 3 cut(s) 87, 610, 613
FokI GGATG 2 cut(s) 10, 333
Fsp4HI GCNGC 3 cut(s) 87, 610, 613
FspBI CTAG 1 cut(s) 638
GlaI GCGC 1 cut(s) 397
GluI GCNGC 3 cut(s) 87, 610, 613
GsaI CCCAGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 2 cut(s) 173, 615
HapII CCGG 1 cut(s) 20
HhaI GCGC 1 cut(s) 398
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HinfI GANTC 2 cut(s) 72, 414
HpaII CCGG 1 cut(s) 20
Hpy166II GTNNAC 3 cut(s) 37, 200, 379
Hpy188I TCNGA 2 cut(s) 486, 567
Hpy188III TCNNGA 2 cut(s) 380, 446
Hpy8I GTNNAC 3 cut(s) 37, 200, 379
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4IV ACGT 2 cut(s) 62, 105
HpyCH4V TGCA 1 cut(s) 392
HpyF3I CTNAG 3 cut(s) 90, 143, 493
HpySE526I ACGT 2 cut(s) 62, 105
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 1 cut(s) 396
Kzo9I GATC 2 cut(s) 382, 502
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 2 cut(s) 98, 621
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 638
MaeII ACGT 2 cut(s) 62, 105
MalI GATC 2 cut(s) 384, 504
MboI GATC 2 cut(s) 382, 502
MboII GAAGA 3 cut(s) 79, 137, 472
MluCI AATT 5 cut(s) 80, 116, 280, 340, 631
MnlI CCTC 4 cut(s) 4, 121, 486, 626
MroXI GAANNNNTTC 3 cut(s) 71, 129, 246
MseI TTAA 3 cut(s) 288, 306, 387
MspA1I CMGCKG 3 cut(s) 42, 89, 612
MspI CCGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 441
NcoI CCATGG 1 cut(s) 180
NdeII GATC 2 cut(s) 382, 502
NlaIII CATG 1 cut(s) 184
NspV TTCGAA 1 cut(s) 584
PctI GAATGC 1 cut(s) 441
PdmI GAANNNNTTC 3 cut(s) 71, 129, 246
PfeI GAWTC 2 cut(s) 72, 414
PflMI CCANNNNNTGG 1 cut(s) 186
PkrI GCNGC 3 cut(s) 88, 611, 614
PmaCI CACGTG 1 cut(s) 63
PmlI CACGTG 1 cut(s) 63
Ppu21I YACGTR 1 cut(s) 63
PspCI CACGTG 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
SaqAI TTAA 3 cut(s) 288, 306, 387
SatI GCNGC 3 cut(s) 87, 610, 613
Sau3AI GATC 2 cut(s) 382, 502
Sau96I GGNCC 1 cut(s) 171
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 446, 477
SmoI CTYRAG 2 cut(s) 446, 477
SpeI ACTAGT 1 cut(s) 637
Sse9I AATT 5 cut(s) 80, 116, 280, 340, 631
SsiI CCGC 3 cut(s) 40, 206, 612
SspMI CTAG 1 cut(s) 638
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 403
TaiI ACGT 2 cut(s) 65, 108
TaqI TCGA 1 cut(s) 584
TasI AATT 5 cut(s) 80, 116, 280, 340, 631
TauI GCSGC 1 cut(s) 615
TfiI GAWTC 2 cut(s) 72, 414
Tru1I TTAA 3 cut(s) 288, 306, 387
Tru9I TTAA 3 cut(s) 288, 306, 387
TscAI CASTG 2 cut(s) 60, 261
TseI GCWGC 2 cut(s) 86, 609
TspDTI ATGAA 2 cut(s) 473, 539
TspRI CASTG 2 cut(s) 60, 261
Van91I CCANNNNNTGG 1 cut(s) 186
XapI RAATTY 1 cut(s) 631
XmiI GTMKAC 2 cut(s) 36, 199
XmnI GAANNNNTTC 3 cut(s) 71, 129, 246
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.