RchiOBHm_Chr1g0341391

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000203
Physical Location & Seq
Reverse (-)
33090227 .. 33090996
770 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56808

Sequence Viewer

Length: 687 bp
ATGGAAGCTGTGAAGGGGAATGAGATCAATCCGGTTGTCATATGCGGCATGGGAGGTATTGGGAAGACAACATTGATGGGGGAAGTTGTTAACAGAGCAAAGAAAGAGGGTCTGTTTGATGAGTATACAAAGGCAACTGTTAAAGAAACTCTTGACAAAACTCCTGACATTTGTCTGATTCAAGATGAACTTGCTCGATATCTAGGTCTTCCACTTGAAGGAAAAGAAATAGATGCAAGAGCAAACAAGATACGTCAAAGATTATCTGCAGGTGCCAAGAAGGTTCTTGTAATATTAGACAATGTTTCGACAACAAACCCAGACTTTTTGTGGGAAGTAGGGATTCCTCGTGATCAGAATAGTTGTAAGCTCTTAGTAACATCAAGAGAACGAGATGTATTCAAGGACATTGACACAAAAAAGAATTTCCCCATCAGTGATTTGCCAGAAAATGAGGCCTGGAGCTTGTTCAAGAAGACAGCAGGAGGTTTGATTGAATCTGATCCCGATTTGCATTTGGTAGCAAAACAGGTTGTGAAGGAATGTGCAGGGTTGCCAATTGCAATTTCAACTGTTGGAAGGGCGCTACATGGTGAAGGAATTGCAATTTGGAAGAATGCACTTAGGGAAATGGAAAAGGCTTGCCCAGAAAATGTTCCAGGAGTGATAGATCATGTAAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

228

Amino Acids

25.09

Weight (kDa)

6.35

Isoelectric Point (pI)

24.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATPase_2 PF01637 4 - 188 3.4e-06 ATPase domain predominantly from Archaea
NB-ARC PF00931 5 - 161 5.1e-22 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 125
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 497
AcsI RAATTY 1 cut(s) 424
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 6 cut(s) 182, 218, 403, 472, 497, 570
AjnI CCWGG 2 cut(s) 458, 658
AjuI GAANNNNNNNTTGG 4 cut(s) 550, 582, 592, 624
AluBI AGCT 3 cut(s) 8, 370, 465
AluI AGCT 3 cut(s) 8, 370, 465
AlwI GGATC 1 cut(s) 497
AoxI GGCC 1 cut(s) 456
ApoI RAATTY 1 cut(s) 424
Asp700I GAANNNNTTC 1 cut(s) 654
AspLEI GCGC 1 cut(s) 586
AsuHPI GGTGA 1 cut(s) 605
BanI GGYRCC 1 cut(s) 272
BauI CACGAG 1 cut(s) 348
BbsI GAAGAC 3 cut(s) 71, 200, 482
BccI CCATC 2 cut(s) 70, 440
BciT130I CCWGG 2 cut(s) 460, 660
BclI TGATCA 1 cut(s) 352
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 267
BfoI RGCGCY 1 cut(s) 587
BfuAI ACCTGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
Bme1390I CCNGG 2 cut(s) 460, 660
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 2 cut(s) 460, 660
BmsI GCATC 1 cut(s) 223
BoxI GACNNNNGTC 1 cut(s) 171
BpiI GAAGAC 3 cut(s) 71, 200, 482
BpmI CTGGAG 1 cut(s) 481
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 218
BseBI CCWGG 2 cut(s) 460, 660
BseLI CCNNNNNNNGG 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 567
BshFI GGCC 1 cut(s) 458
BshNI GGYRCC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 218
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 1 cut(s) 458
Bsp143I GATC 4 cut(s) 24, 352, 502, 670
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 458
BspLI GGNNCC 1 cut(s) 274
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 272
BssMI GATC 4 cut(s) 24, 352, 502, 670
BssNAI GTATAC 1 cut(s) 126
BssSI CACGAG 1 cut(s) 348
Bst1107I GTATAC 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 2 cut(s) 460, 660
Bst4CI ACNGT 2 cut(s) 139, 574
BstC8I GCNNGC 1 cut(s) 643
BstDEI CTNAG 2 cut(s) 373, 623
BstH2I RGCGCY 1 cut(s) 587
BstHHI GCGC 1 cut(s) 586
BstKTI GATC 4 cut(s) 27, 355, 505, 673
BstMBI GATC 4 cut(s) 24, 352, 502, 670
BstNI CCWGG 2 cut(s) 460, 660
BstPAI GACNNNNGTC 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 458, 658
BstSFI CTRYAG 1 cut(s) 267
BstV2I GAAGAC 3 cut(s) 71, 200, 482
BstZ17I GTATAC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 458
BtsIMutI CAGTG 1 cut(s) 442
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 643
CfoI GCGC 1 cut(s) 586
CviAII CATG 3 cut(s) 49, 590, 674
CviJI RGCY 5 cut(s) 8, 370, 458, 465, 641
CviKI_1 RGCY 5 cut(s) 8, 370, 458, 465, 641
DdeI CTNAG 2 cut(s) 373, 623
DpnI GATC 4 cut(s) 26, 354, 504, 672
DpnII GATC 4 cut(s) 24, 352, 502, 670
Eco147I AGGCCT 1 cut(s) 458
Eco32I GATATC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 458, 658
EcoRV GATATC 1 cut(s) 200
FaeI CATG 3 cut(s) 52, 593, 677
FaiI YATR 6 cut(s) 41, 43, 50, 126, 591, 675
FalI AAGNNNNNCTT 4 cut(s) 135, 167, 174, 206
FatI CATG 3 cut(s) 48, 589, 673
FauNDI CATATG 1 cut(s) 41
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 1 cut(s) 203
GlaI GCGC 1 cut(s) 585
GluI GCNGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 481
HaeII RGCGCY 1 cut(s) 587
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 32
HhaI GCGC 1 cut(s) 586
Hin1II CATG 3 cut(s) 52, 593, 677
Hin6I GCGC 1 cut(s) 584
HinP1I GCGC 1 cut(s) 584
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 3 cut(s) 178, 343, 497
HpaI GTTAAC 1 cut(s) 91
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 2 cut(s) 91, 126
Hpy188I TCNGA 3 cut(s) 177, 357, 502
Hpy188III TCNNGA 7 cut(s) 152, 164, 182, 350, 384, 472, 506
Hpy8I GTNNAC 2 cut(s) 91, 126
HpyAV CCTTC 6 cut(s) 7, 212, 274, 532, 573, 590
HpyCH4III ACNGT 2 cut(s) 139, 574
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 7 cut(s) 236, 269, 514, 548, 563, 605, 620
HpyF3I CTNAG 2 cut(s) 373, 623
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 3 cut(s) 52, 593, 677
HspAI GCGC 1 cut(s) 584
Ksp22I TGATCA 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 91
Kzo9I GATC 4 cut(s) 24, 352, 502, 670
LmnI GCTCC 1 cut(s) 462
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 376
MalI GATC 4 cut(s) 26, 354, 504, 672
MboI GATC 4 cut(s) 24, 352, 502, 670
MboII GAAGA 4 cut(s) 76, 200, 487, 625
MfeI CAATTG 1 cut(s) 558
MluCI AATT 5 cut(s) 424, 558, 564, 600, 606
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 5 cut(s) 47, 100, 357, 448, 479
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 2 cut(s) 90, 141
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 460, 660
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 2 cut(s) 460, 660
NdeI CATATG 1 cut(s) 41
NdeII GATC 4 cut(s) 24, 352, 502, 670
NlaIII CATG 3 cut(s) 52, 593, 677
NlaIV GGNNCC 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 260
PceI AGGCCT 1 cut(s) 458
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 3 cut(s) 178, 343, 497
PfoI TCCNGGA 1 cut(s) 658
PkrI GCNGC 1 cut(s) 47
PshAI GACNNNNGTC 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 458, 658
PspGI CCWGG 2 cut(s) 458, 658
PspN4I GGNNCC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 271
SaqAI TTAA 2 cut(s) 90, 141
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 4 cut(s) 24, 352, 502, 670
ScrFI CCNGG 2 cut(s) 460, 660
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 267
Sse9I AATT 5 cut(s) 424, 558, 564, 600, 606
SseBI AGGCCT 1 cut(s) 458
SsiI CCGC 1 cut(s) 45
SspI AATATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 203
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 2 cut(s) 458, 658
TaaI ACNGT 2 cut(s) 139, 574
TaiI ACGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 196, 308
TasI AATT 5 cut(s) 424, 558, 564, 600, 606
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 3 cut(s) 178, 343, 497
Tru1I TTAA 2 cut(s) 90, 141
Tru9I TTAA 2 cut(s) 90, 141
TscAI CASTG 1 cut(s) 442
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 1 cut(s) 442
XapI RAATTY 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 327
XmiI GTMKAC 1 cut(s) 125
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.