Rmu_sc0001700.1_g000016

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001700.1
OG0000203
Physical Location & Seq
Reverse (-)
68530 .. 74846
6317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001700.1_g000016.1.cds

Sequence Viewer

Length: 5061 bp
atggcagatattgtgattacagttgttggaaaattagcagagtacacagtcgcacctgttatgcgacagtttggctatctgataaactacaagagcaatgttcgagatctcaccgagaaggttacaactttgactgccaaaagagatggggtacaacgatgtgtagatgcagcgaagaggaacttagaggatattcttcctctagttgacaactggttggaacgagtaaagcagaccatagaagaaaaggagacatgttttgaagaaggaagagtagccaaggcaacaacatgctgcagctccaatgggtggtgtccaaatctgaaggtccgtcattccttgagtaggaaagcagcgaagatggctccaaaggtagatgtcctccttagagaaggagatttcgggacaatatcatgtcctgctcgtgagcagaagattcattatccagccatgcaatattttgaggattccactgaggcaccggccaagccacaagaaggggctagctcctcctcaggaacatccgatcctgctaaaccacctgcacctatggatctctctgagcgtctgcaatacaggttaccttatacaaaagatctcctgacagctctggaagatgacaagatcagtatgattggcatttctgggacaatcagagtgatagacacagtaacaactaaagagttcatgaaaagaatgaaacagaaaaagctctttgaaaaggttgcgatggcagttgtgtcccagggtccagacttgaaacgagtgcaaggtgaaattgcagaaatgctagacctgaaattggagaatgggagtttggttgaacgggcagagaggctacgtgctgtattattggcatccgaatattctaagaggattcttgtaatactgactgatgtctgtggaatacttgatttggatgcaattggaatttctcatgttgatatcaagaagagctgcaagatcatgttgatttcacaactatcaaatgtgtttggtgaaatggggactcagaccaatttcaaattgttattacaatccactcccagagcaagacctgttgagtttagatcaagaatctcagtcatcagagatgtaatggatgctgtgacagatgatgaatccaaccccattgtaatatgtgggatggggggagttggcaaaacaaccttggtgatggaaattggtgcaaaagcgagtgaaatagatctatttgatgatgttgcaattgcagagtttactcaagaacctgacttgatcaaaatccaagaaaaaattgctcaagctctaggtctgaaacttgaaaaaggtgatgaccgagcagccaagttacgagaaagattatcaatggagacgaaaaaggtccttgtaatattggacaatgtttggggacaactagatctgtgggaactaggaattccaatttcccgggatccaaaaagttgcaaacttctggtatcatcacggaatcaagatatctttaaagatatgaaaaccaaaaagaacttcctcattggtagtttgctaaaacatgatgcctggagtttgtttaagaaggtagcaggatgttccattgaatccgattccgagctgcgtcctatagcagagcaggttctggatgaatgtgatggcttaccggttgcaatttctactgttggaagggcactacaaggtgaaaaaattccagtatggagaaatgcacttagacaactaagaatggcttacccaaaagatgttccaggagttatagagcgtgtgtacggaaaaatagagttcagttatgaatgtctaccgagcgaggaacccaaatcatgttttttgctgtgttgcatatttccagaaagtgcacagtttccaattgaatggttggttatgtatgcgattgggcttggactttttaaagacattgattcaatatctggagcaagggattacgtaataacattggttgaaacactcaaatgtcgttctttgttgttagacggcgatgagaaagattggtttagaatgcatgatgtggtgcgtgacgtagccgtgtatatagcctccaaagagttagcacaaaagaagagtgataagcttgaaaggagatttatggcaagaagaggagtggaattgaaggattggctcaagagcagttcactgagagccgatatgagtactactgagcttttagtgttgggtgccacagatagaattgaactggagctgccagccacaattttcagtggaatggaaaatctcaaggttttaatgatcgcgtgttcaatcctcccatccctttcacttctgaagaatcttcaaacactcattctagtgggttgccgtagcaatattgatgtcattggagagctacggtcactcatgatactctgtttctataaatctgacaacgtcaaacagttgcctgatacattcaaaaatttatctaatctgaggttgttaaacttgacaggatgtacaaagcttaaagtaatctcaccaggtgttatatcgagtttatctcgtctagaagaattgtacatggggaatggctttaaagattgggtggttgagaaactgggctcagaggaaagaagtgaaccagaggaactcgacagccttggagatctgttcgcagaattctgcaagctatttcataagcttgaaagatttaagatctctattggatgggataagcataaagacttggcggacataaagggtaactacttgagagttcatgatcttgaagcaagctctcttgcggatactggaatcggtttgttgttaaagaaaactaaccagctcgagttaaaaatgaagaatttgactgaccctctcaatgtcttagatgtaaactgcattgcaaacttggagtcacttaccctcaaagactgtgattctctggaatatctgattgacatgactcttaagcaagataccccacgaagcgtctttcctgtcttgaattatctggaaatcgatggagcaagaaggctgaaagagatttttcatggtgatctgccactgggttcgcttcaaaaactagaaaggctaactttacgggattgccagtcattggaagcaatttttgccttggaaggatcgggacatcatgtcaaagagatcaacttcctttgtttgacaaagttggaacttaaaggtctcccgagcttcacttgcgagtcattggatctaaactgctgtgcaaacttggagtcacttaccctcaaagactgtgattctctggaatatctgattgacatgactcttaagcaagataccccacgaagcgtctttcctgtcttgaattatctggaaatcgatggagcaagaaggctgaaagagatttttcatggtgatctgccactgggttcgcttcaaaaactagaaaggctaactttacgggattgccagtcattggaagcaatttttgccttggaaggatcgggacatcatgtcaaagagatcaacttccttagtttgacatggttgatacttgaaggtctaccaagcttcactggaatgagcaaaattacttgtaaggggctggaaaagcaactggaagtcggcagtctccatcccaatagcttgaccgctgaacattcacttctctctgaccccaaggttgtctttccagtcttgagaagcctgaaagttaaagggctgggcaacttgaaagagatatggaataaccaactttcacccaactccttctctgaattaagagagctcactgtcgaggattgtgacaaactattgcatttgggaccaacacaaatgcaaaatagattgcagagattggagaccatcactgtagtaaactattcttcactggaagggatttttgaagtcggaagatcgaccgtcaatgaagggatgcaaataaatgataccaaggatttcaaacaatcttgtcaaggctttcagaatttaacccaactagaagttagatcttgtggcagtttgagataccttctcacttcttcgattgtcagaggtcttgtcaagctcgaaagtctatgtataatatcttgcgagaagatcgaagcaatagtcgcagcagatgaaggtgaagaaacagaggatgaaagcaattgccagtcattggaagcaatttttgccttggaaggatcgggacatcacgtcaaagagatcaacttccttagtttgaggctgttgatacttggaggtctaccaagcttcactggaatgagcaaaagtacttgtaaggggatggaaaggcaactggaagtcagcagtctccatcgcaatagtttgatcgttgaacattcacttttctctgaccccaaggttgtctttcccgtcttggaatacctgaacattagccgtctgggcaactggaaagagatatggaatagccgactttcacccaactccttctctgaattaagaaggctaactgtcaaggattgtgacaaactattgcatttggtaccaacacaaatgcaaaatagattgcagagattggagtacatagaggtagagaactgttcttcactggaagagatttttgaagtcggaagattgaccgtcaatgaagggaatgcttcaatttctcagtcagacaaaataccttcaaatatttcccaatctgatcaagggatgcaaataaatgatatcagggatttcaaacaatcttgtcaaggctttcagaatttaactggactagtagttgaatcttgtggcagtttgagatacctgctctctccttcgattgccagaggtcttgtcaagctcgaatttcttgctataagatcttgcgagatgatcgaagcaatagtcgcagcagatgagggtgaagaaacacagaatgaaagcatgctccctcagctatgttatttgaagctttgggatctacccaatcttggaagcttttcgcaaggcaaatatacttttgattggccacgattgggatggatcgaaattaacaaatgcaacaaaatgaacaacttttgttcaggatccctcagcatctcaaggacagtgtgcatatatgtctgtgattctggtgagaatcttgagcaggagctgaatgatagcaagaaagaaagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1686

Amino Acids

189.24

Weight (kDa)

5.51

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 550
Acc36I ACCTGC 3 cut(s) 550, 1600, 4713
Acc65I GGTACC 1 cut(s) 4438
AccB1I GGYRCC 3 cut(s) 478, 2183, 4438
AccB7I CCANNNNNTGG 4 cut(s) 309, 3061, 3403, 4090
AccI GTMKAC 3 cut(s) 1789, 3490, 4177
AccII CGCG 1 cut(s) 2261
AciI CCGC 3 cut(s) 2693, 2747, 3579
AcoI YGGCCR 2 cut(s) 483, 4907
AcsI RAATTY 9 cut(s) 930, 1416, 1680, 2422, 2621, 2806, 3913, 4660, 4745
AcuI CTGAAG 2 cut(s) 344, 2312
AdeI CACNNNGTG 1 cut(s) 2486
AfaI GTAC 9 cut(s) 44, 153, 1760, 2161, 2461, 2522, 4207, 4440, 4478
AfiI CCNNNNNNNGG 9 cut(s) 309, 345, 497, 802, 3061, 3403, 4090, 4871, 4916
AflII CTTAAG 2 cut(s) 2912, 3254
AflIII ACRYGT 1 cut(s) 254
AgeI ACCGGT 1 cut(s) 1636
AhdI GACNNNNNGTC 3 cut(s) 3098, 3440, 4127
AhlI ACTAGT 1 cut(s) 4672
AjiI CACGTC 1 cut(s) 4129
AjnI CCWGG 4 cut(s) 744, 1538, 1738, 2482
AjuI GAANNNNNNNTTGG 4 cut(s) 800, 832, 1490, 1522
AloI GAACNNNNNNTCC 2 cut(s) 511, 543
Alw21I GWGCWC 2 cut(s) 1849, 3717
Alw26I GTCTC 6 cut(s) 245, 1346, 3152, 3563, 3782, 4250
Alw44I GTGCAC 1 cut(s) 1845
AlwNI CAGNNNCTG 2 cut(s) 1615, 5035
Ama87I CYCGRG 3 cut(s) 1428, 2789, 3151
AoxI GGCC 2 cut(s) 483, 4907
ApaLI GTGCAC 1 cut(s) 1845
ApoI RAATTY 9 cut(s) 930, 1416, 1680, 2422, 2621, 2806, 3913, 4660, 4745
ArsI GACNNNNNNTTYG 8 cut(s) 2843, 2875, 3185, 3217, 4023, 4055, 4770, 4802
AsiGI ACCGGT 1 cut(s) 1636
Asp700I GAANNNNTTC 2 cut(s) 1680, 4879
Asp718I GGTACC 1 cut(s) 4438
AspS9I GGNCC 4 cut(s) 328, 749, 1363, 3752
AsuC2I CCSGG 2 cut(s) 1429, 1430
AsuNHI GCTAGC 1 cut(s) 503
AvaI CYCGRG 3 cut(s) 1428, 2789, 3151
AvaII GGWCC 4 cut(s) 328, 749, 1363, 3752
AxyI CCTNAGG 1 cut(s) 514
BaeGI GKGCMC 2 cut(s) 1666, 1849
BalI TGGCCA 1 cut(s) 4909
BamHI GGATCC 2 cut(s) 1432, 4967
BanI GGYRCC 3 cut(s) 478, 2183, 4438
BanII GRGCYC 2 cut(s) 2567, 3717
BauI CACGAG 1 cut(s) 423
Bbv12I GWGCWC 2 cut(s) 1849, 3717
BbvCI CCTCAGC 2 cut(s) 4833, 4973
BceAI ACGGC 4 cut(s) 1999, 2018, 2310, 4317
BcgI CGANNNNNNTGC 2 cut(s) 4733, 4767
BciT130I CCWGG 4 cut(s) 746, 1540, 1740, 2484
BciVI GTATCC 1 cut(s) 2743
BclI TGATCA 2 cut(s) 1257, 4600
BcnI CCSGG 2 cut(s) 1429, 1430
BcoDI GTCTC 6 cut(s) 245, 1346, 3152, 3563, 3782, 4250
BcuI ACTAGT 1 cut(s) 4672
BfmI CTRYAG 3 cut(s) 295, 1599, 3798
BfrI CTTAAG 2 cut(s) 2912, 3254
BfuAI ACCTGC 3 cut(s) 550, 1600, 4713
BfuI GTATCC 1 cut(s) 2743
BglI GCCNNNNNGGC 1 cut(s) 4338
BglII AGATCT 8 cut(s) 106, 595, 1207, 1399, 2608, 2658, 3935, 4760
BmcAI AGTACT 2 cut(s) 2161, 4207
Bme1390I CCNGG 6 cut(s) 746, 1429, 1430, 1540, 1740, 2484
Bme18I GGWCC 4 cut(s) 328, 749, 1363, 3752
BmeRI GACNNNNNGTC 3 cut(s) 3098, 3440, 4127
BmeT110I CYCGRG 3 cut(s) 1428, 2789, 3151
BmgBI CACGTC 1 cut(s) 4129
BmgT120I GGNCC 4 cut(s) 328, 749, 1363, 3752
BmiI GGNNCC 9 cut(s) 366, 480, 750, 1434, 1803, 2185, 3753, 4440, 4969
BmrFI CCNGG 6 cut(s) 746, 1429, 1430, 1540, 1740, 2484
BmrI ACTGGG 3 cut(s) 2570, 3020, 3362
BmsI GCATC 8 cut(s) 157, 866, 910, 1093, 1525, 3852, 4599, 4986
BmtI GCTAGC 1 cut(s) 507
BmuI ACTGGG 3 cut(s) 2570, 3020, 3362
BoxI GACNNNNGTC 1 cut(s) 896
BplI GAGNNNNNCTC 2 cut(s) 2488, 2520
BpmI CTGGAG 3 cut(s) 1561, 1941, 2225
Bpu10I CCTNAGC 2 cut(s) 4833, 4973
BpuEI CTTGAG 9 cut(s) 361, 1227, 1266, 2114, 2228, 2734, 3646, 4966, 5045
BpuMI CCSGG 2 cut(s) 1429, 1430
Bsa29I ATCGAT 2 cut(s) 2964, 3306
BsaAI YACGTR 2 cut(s) 842, 1936
BsaBI GATNNNNATC 1 cut(s) 1262
BsaI GGTCTC 2 cut(s) 3152, 3782
BsaWI WCCGGW 1 cut(s) 1636
Bsc4I CCNNNNNNNGG 9 cut(s) 309, 345, 497, 802, 3061, 3403, 4090, 4871, 4916
Bse118I RCCGGY 2 cut(s) 481, 1636
Bse21I CCTNAGG 1 cut(s) 514
Bse3DI GCAATG 2 cut(s) 103, 2844
Bse8I GATNNNNATC 1 cut(s) 1262
BseBI CCWGG 4 cut(s) 746, 1540, 1740, 2484
BseCI ATCGAT 2 cut(s) 2964, 3306
BseJI GATNNNNATC 1 cut(s) 1262
BseLI CCNNNNNNNGG 9 cut(s) 309, 345, 497, 802, 3061, 3403, 4090, 4871, 4916
BseMI GCAATG 2 cut(s) 103, 2844
BseRI GAGGAG 3 cut(s) 499, 502, 2121
BseSI GKGCMC 2 cut(s) 1666, 1849
BseYI CCCAGC 1 cut(s) 3649
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 2261
Bsh1285I CGRYCG 1 cut(s) 3849
BshFI GGCC 2 cut(s) 485, 4909
BshNI GGYRCC 3 cut(s) 478, 2183, 4438
BshTI ACCGGT 1 cut(s) 1636
BshVI ATCGAT 2 cut(s) 2964, 3306
BsiEI CGRYCG 1 cut(s) 3849
BsiHKAI GWGCWC 2 cut(s) 1849, 3717
BsiHKCI CYCGRG 3 cut(s) 1428, 2789, 3151
BsiSI CCGG 3 cut(s) 482, 1429, 1637
BslFI GGGAC 9 cut(s) 418, 661, 727, 1021, 1404, 3105, 3447, 3765, 4134
BslI CCNNNNNNNGG 9 cut(s) 309, 345, 497, 802, 3061, 3403, 4090, 4871, 4916
BsmAI GTCTC 6 cut(s) 245, 1346, 3152, 3563, 3782, 4250
BsmBI CGTCTC 1 cut(s) 1346
BsmFI GGGAC 9 cut(s) 418, 661, 727, 1021, 1404, 3105, 3447, 3765, 4134
BsmI GAATGC 2 cut(s) 2013, 4555
BsnI GGCC 2 cut(s) 485, 4909
Bso31I GGTCTC 2 cut(s) 3152, 3782
BsoBI CYCGRG 3 cut(s) 1428, 2789, 3151
Bsp1286I GDGCHC 4 cut(s) 1666, 1849, 2567, 3717
Bsp1407I TGTACA 2 cut(s) 2459, 2520
BspACI CCGC 3 cut(s) 2693, 2747, 3579
BspANI GGCC 2 cut(s) 485, 4909
BspDI ATCGAT 2 cut(s) 2964, 3306
BspFNI CGCG 1 cut(s) 2261
BspHI TCATGA 3 cut(s) 687, 2364, 2722
BspLI GGNNCC 9 cut(s) 366, 480, 750, 1434, 1803, 2185, 3753, 4440, 4969
BspMAI CTGCAG 1 cut(s) 299
BspMI ACCTGC 3 cut(s) 550, 1600, 4713
BspOI GCTAGC 1 cut(s) 507
BspQI GCTCTTC 1 cut(s) 947
BspT107I GGYRCC 3 cut(s) 478, 2183, 4438
BspTI CTTAAG 2 cut(s) 2912, 3254
BspTNI GGTCTC 2 cut(s) 3152, 3782
BsrDI GCAATG 2 cut(s) 103, 2844
BsrFI RCCGGY 2 cut(s) 481, 1636
BsrGI TGTACA 2 cut(s) 2459, 2520
BssAI RCCGGY 2 cut(s) 481, 1636
BssSI CACGAG 1 cut(s) 423
BssT1I CCWWGG 9 cut(s) 279, 1170, 2602, 3078, 3420, 3606, 3879, 4107, 4293
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 4 cut(s) 746, 1540, 1740, 2484
Bst6I CTCTTC 6 cut(s) 170, 265, 947, 2063, 2098, 4503
BstAFI CTTAAG 2 cut(s) 2912, 3254
BstAPI GCANNNNNTGC 3 cut(s) 3074, 3416, 4103
BstAUI TGTACA 2 cut(s) 2459, 2520
BstBAI YACGTR 2 cut(s) 842, 1936
BstC8I GCNNGC 5 cut(s) 505, 2214, 2630, 2737, 4826
BstEII GGTNACC 1 cut(s) 579
BstENI CCTNNNNNAGG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 2261
BstMAI GTCTC 6 cut(s) 245, 1346, 3152, 3563, 3782, 4250
BstMCI CGRYCG 1 cut(s) 3849
BstNI CCWGG 4 cut(s) 746, 1540, 1740, 2484
BstNSI RCATGY 3 cut(s) 258, 294, 4828
BstPAI GACNNNNGTC 1 cut(s) 896
BstPI GGTNACC 1 cut(s) 579
BstSCI CCNGG 6 cut(s) 744, 1427, 1428, 1538, 1738, 2482
BstSFI CTRYAG 3 cut(s) 295, 1599, 3798
BstSLI GKGCMC 2 cut(s) 1666, 1849
BstSNI TACGTA 1 cut(s) 1936
BstUI CGCG 1 cut(s) 2261
BstXI CCANNNNNNTGG 1 cut(s) 1863
Bsu15I ATCGAT 2 cut(s) 2964, 3306
Bsu36I CCTNAGG 1 cut(s) 514
BsuI GTATCC 1 cut(s) 2743
BsuRI GGCC 2 cut(s) 485, 4909
BsuTUI ATCGAT 2 cut(s) 2964, 3306
BtgZI GCGATG 3 cut(s) 743, 2001, 4235
BtrI CACGTC 1 cut(s) 4129
BveI ACCTGC 3 cut(s) 550, 1600, 4713
Cac8I GCNNGC 5 cut(s) 505, 2214, 2630, 2737, 4826
CaiI CAGNNNCTG 2 cut(s) 1615, 5035
CciI TCATGA 3 cut(s) 687, 2364, 2722
Cfr10I RCCGGY 2 cut(s) 481, 1636
Cfr13I GGNCC 4 cut(s) 328, 749, 1363, 3752
Cfr9I CCCGGG 1 cut(s) 1428
ClaI ATCGAT 2 cut(s) 2964, 3306
CseI GACGC 4 cut(s) 554, 1583, 2923, 3265
CsiI ACCWGGT 1 cut(s) 2482
Csp6I GTAC 9 cut(s) 43, 152, 1759, 2160, 2460, 2521, 4206, 4439, 4477
CspAI ACCGGT 1 cut(s) 1636
CviQI GTAC 9 cut(s) 43, 152, 1759, 2160, 2460, 2521, 4206, 4439, 4477
DraI TTTAAA 3 cut(s) 1483, 1900, 2539
DraIII CACNNNGTG 1 cut(s) 2486
DriI GACNNNNNGTC 3 cut(s) 3098, 3440, 4127
EaeI YGGCCR 2 cut(s) 483, 4907
Eam1104I CTCTTC 6 cut(s) 170, 265, 947, 2063, 2098, 4503
Eam1105I GACNNNNNGTC 3 cut(s) 3098, 3440, 4127
EarI CTCTTC 6 cut(s) 170, 265, 947, 2063, 2098, 4503
EciI GGCGGA 1 cut(s) 2708
Ecl136II GAGCTC 1 cut(s) 3715
Eco105I TACGTA 1 cut(s) 1936
Eco130I CCWWGG 9 cut(s) 279, 1170, 2602, 3078, 3420, 3606, 3879, 4107, 4293
Eco24I GRGCYC 2 cut(s) 2567, 3717
Eco31I GGTCTC 2 cut(s) 3152, 3782
Eco32I GATATC 3 cut(s) 946, 1477, 4624
Eco47I GGWCC 4 cut(s) 328, 749, 1363, 3752
Eco53kI GAGCTC 1 cut(s) 3715
Eco57I CTGAAG 2 cut(s) 344, 2312
Eco81I CCTNAGG 1 cut(s) 514
Eco88I CYCGRG 3 cut(s) 1428, 2789, 3151
Eco91I GGTNACC 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 3715
EcoNI CCTNNNNNAGG 1 cut(s) 343
EcoO109I RGGNCCY 1 cut(s) 1363
EcoO65I GGTNACC 1 cut(s) 579
EcoRI GAATTC 2 cut(s) 1416, 2621
EcoRII CCWGG 4 cut(s) 744, 1538, 1738, 2482
EcoRV GATATC 3 cut(s) 946, 1477, 4624
EcoT14I CCWWGG 9 cut(s) 279, 1170, 2602, 3078, 3420, 3606, 3879, 4107, 4293
EcoT22I ATGCAT 1 cut(s) 2013
EcoT38I GRGCYC 2 cut(s) 2567, 3717
ErhI CCWWGG 9 cut(s) 279, 1170, 2602, 3078, 3420, 3606, 3879, 4107, 4293
Esp3I CGTCTC 1 cut(s) 1346
FaqI GGGAC 9 cut(s) 418, 661, 727, 1021, 1404, 3105, 3447, 3765, 4134
FbaI TGATCA 2 cut(s) 1257, 4600
FblI GTMKAC 3 cut(s) 1789, 3490, 4177
FriOI GRGCYC 2 cut(s) 2567, 3717
GsaI CCCAGC 1 cut(s) 3653
GsuI CTGGAG 3 cut(s) 1561, 1941, 2225
HaeIII GGCC 2 cut(s) 485, 4909
HapII CCGG 3 cut(s) 482, 1429, 1637
HgaI GACGC 4 cut(s) 554, 1583, 2923, 3265
HincII GTYRAC 1 cut(s) 208
HindII GTYRAC 1 cut(s) 208
HindIII AAGCTT 7 cut(s) 2078, 2465, 2642, 3496, 4183, 4850, 4876
HpaII CCGG 3 cut(s) 482, 1429, 1637
HpyCH4IV ACGT 5 cut(s) 841, 1935, 2028, 2394, 4128
HpySE526I ACGT 5 cut(s) 841, 1935, 2028, 2394, 4128
KpnI GGTACC 1 cut(s) 4442
Ksp22I TGATCA 2 cut(s) 1257, 4600
LguI GCTCTTC 1 cut(s) 947
LmnI GCTCC 9 cut(s) 305, 370, 512, 1922, 2206, 2969, 3311, 4833, 5032
LweI GCATC 8 cut(s) 157, 866, 910, 1093, 1525, 3852, 4599, 4986
MabI ACCWGGT 1 cut(s) 2482
MaeII ACGT 5 cut(s) 841, 1935, 2028, 2394, 4128
MfeI CAATTG 4 cut(s) 924, 1227, 1857, 4078
MhlI GDGCHC 4 cut(s) 1666, 1849, 2567, 3717
MlsI TGGCCA 1 cut(s) 4909
MluNI TGGCCA 1 cut(s) 4909
MlyI GAGTC 6 cut(s) 1003, 2867, 2902, 3176, 3209, 3244
MmeI TCCRAC 7 cut(s) 7, 198, 1149, 1636, 3114, 3817, 4504
Mox20I TGGCCA 1 cut(s) 4909
Mph1103I ATGCAT 1 cut(s) 2013
MroXI GAANNNNTTC 2 cut(s) 1680, 4879
MscI TGGCCA 1 cut(s) 4909
MslI CAYNNNNRTG 4 cut(s) 1960, 2315, 3506, 4193
Msp20I TGGCCA 1 cut(s) 4909
MspA1I CMGCKG 1 cut(s) 3581
MspCI CTTAAG 2 cut(s) 2912, 3254
MspI CCGG 3 cut(s) 482, 1429, 1637
MspR9I CCNGG 6 cut(s) 746, 1429, 1430, 1540, 1740, 2484
MunI CAATTG 4 cut(s) 924, 1227, 1857, 4078
Mva1269I GAATGC 2 cut(s) 2013, 4555
MvaI CCWGG 4 cut(s) 746, 1540, 1740, 2484
MvnI CGCG 1 cut(s) 2261
NciI CCSGG 2 cut(s) 1429, 1430
NheI GCTAGC 1 cut(s) 503
NlaIV GGNNCC 9 cut(s) 366, 480, 750, 1434, 1803, 2185, 3753, 4440, 4969
NmuCI GTSAC 7 cut(s) 1108, 2024, 2358, 2859, 3201, 3731, 4418
NsiI ATGCAT 1 cut(s) 2013
NspI RCATGY 3 cut(s) 258, 294, 4828
PaeI GCATGC 1 cut(s) 4828
PaeR7I CTCGAG 1 cut(s) 2789
PagI TCATGA 3 cut(s) 687, 2364, 2722
PaqCI CACCTGC 1 cut(s) 550
PasI CCCWGGG 1 cut(s) 745
PciI ACATGT 1 cut(s) 254
PciSI GCTCTTC 1 cut(s) 947
PctI GAATGC 2 cut(s) 2013, 4555
PdmI GAANNNNTTC 2 cut(s) 1680, 4879
PflFI GACNNNGTC 1 cut(s) 2393
PflMI CCANNNNNTGG 4 cut(s) 309, 3061, 3403, 4090
PfoI TCCNGGA 1 cut(s) 1738
PinAI ACCGGT 1 cut(s) 1636
PleI GAGTC 6 cut(s) 1003, 2866, 2902, 3175, 3208, 3244
PpsI GAGTC 6 cut(s) 1003, 2866, 2902, 3175, 3208, 3244
Ppu21I YACGTR 2 cut(s) 842, 1936
PpuMI RGGWCCY 1 cut(s) 1363
PscI ACATGT 1 cut(s) 254
PshAI GACNNNNGTC 1 cut(s) 896
Psp124BI GAGCTC 1 cut(s) 3717
Psp5II RGGWCCY 1 cut(s) 1363
Psp6I CCWGG 4 cut(s) 744, 1538, 1738, 2482
PspEI GGTNACC 1 cut(s) 579
PspFI CCCAGC 1 cut(s) 3649
PspGI CCWGG 4 cut(s) 744, 1538, 1738, 2482
PspN4I GGNNCC 9 cut(s) 366, 480, 750, 1434, 1803, 2185, 3753, 4440, 4969
PspPI GGNCC 4 cut(s) 328, 749, 1363, 3752
PspPPI RGGWCCY 1 cut(s) 1363
PspXI VCTCGAGB 1 cut(s) 2789
PstI CTGCAG 1 cut(s) 299
PstNI CAGNNNCTG 2 cut(s) 1615, 5035
PsyI GACNNNGTC 1 cut(s) 2393
RsaI GTAC 9 cut(s) 44, 153, 1760, 2161, 2461, 2522, 4207, 4440, 4478
RsaNI GTAC 9 cut(s) 43, 152, 1759, 2160, 2460, 2521, 4206, 4439, 4477
RseI CAYNNNNRTG 4 cut(s) 1960, 2315, 3506, 4193
SacI GAGCTC 1 cut(s) 3717
SapI GCTCTTC 1 cut(s) 947
Sau96I GGNCC 4 cut(s) 328, 749, 1363, 3752
ScaI AGTACT 2 cut(s) 2161, 4207
SchI GAGTC 6 cut(s) 1003, 2867, 2902, 3176, 3209, 3244
ScrFI CCNGG 6 cut(s) 746, 1429, 1430, 1540, 1740, 2484
SduI GDGCHC 4 cut(s) 1666, 1849, 2567, 3717
SexAI ACCWGGT 1 cut(s) 2482
SfaNI GCATC 8 cut(s) 157, 866, 910, 1093, 1525, 3852, 4599, 4986
SfcI CTRYAG 3 cut(s) 295, 1599, 3798
Sfr274I CTCGAG 1 cut(s) 2789
SinI GGWCC 4 cut(s) 328, 749, 1363, 3752
SlaI CTCGAG 1 cut(s) 2789
SmaI CCCGGG 1 cut(s) 1430
SmiMI CAYNNNNRTG 4 cut(s) 1960, 2315, 3506, 4193
SnaBI TACGTA 1 cut(s) 1936
SpeI ACTAGT 1 cut(s) 4672
SphI GCATGC 1 cut(s) 4828
SsiI CCGC 3 cut(s) 2693, 2747, 3579
SspI AATATT 5 cut(s) 458, 866, 1374, 2335, 4588
SstI GAGCTC 1 cut(s) 3717
StyD4I CCNGG 6 cut(s) 744, 1427, 1428, 1538, 1738, 2482
StyI CCWWGG 9 cut(s) 279, 1170, 2602, 3078, 3420, 3606, 3879, 4107, 4293
TaiI ACGT 5 cut(s) 844, 1938, 2031, 2397, 4131
TaqII GACCGA 1 cut(s) 1332
TatI WGTACW 6 cut(s) 42, 2159, 2459, 2520, 4205, 4476
TseFI GTSAC 7 cut(s) 1108, 2024, 2358, 2859, 3201, 3731, 4418
Tsp45I GTSAC 7 cut(s) 1108, 2024, 2358, 2859, 3201, 3731, 4418
TspGWI ACGGA 3 cut(s) 320, 1480, 1776
TspMI CCCGGG 1 cut(s) 1428
Tth111I GACNNNGTC 1 cut(s) 2393
Van91I CCANNNNNTGG 4 cut(s) 309, 3061, 3403, 4090
Vha464I CTTAAG 2 cut(s) 2912, 3254
VneI GTGCAC 1 cut(s) 1845
VpaK11BI GGWCC 4 cut(s) 328, 749, 1363, 3752
XagI CCTNNNNNAGG 1 cut(s) 343
XapI RAATTY 9 cut(s) 930, 1416, 1680, 2422, 2621, 2806, 3913, 4660, 4745
XbaI TCTAGA 1 cut(s) 2509
XceI RCATGY 3 cut(s) 258, 294, 4828
XcmI CCANNNNNNNNNTGG 1 cut(s) 4917
XhoI CTCGAG 1 cut(s) 2789
XmaI CCCGGG 1 cut(s) 1428
XmiI GTMKAC 3 cut(s) 1789, 3490, 4177
XmnI GAANNNNTTC 2 cut(s) 1680, 4879
ZrmI AGTACT 2 cut(s) 2161, 4207
Zsp2I ATGCAT 1 cut(s) 2013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.