Disease resistance protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 181 - 344 | 1.1e-18 | NB-ARC domain |
| LRR_14 | PF23598 | 621 - 692 | 1.8e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 625 - 680 | 1.5e-06 | Leucine rich repeat |
| LRR_RPS2 | PF23247 | 1054 - 1206 | 2.5e-20 | Plant disease resistance protein RPS2-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 3114 |
| Acc36I | ACCTGC | 1 cut(s) | 175 |
| Acc65I | GGTACC | 1 cut(s) | 3301 |
| AccB1I | GGYRCC | 2 cut(s) | 3301, 3860 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2295 |
| AccI | GTMKAC | 5 cut(s) | 225, 680, 2081, 2145, 2308 |
| AciI | CCGC | 5 cut(s) | 365, 600, 609, 1547, 2315 |
| AclI | AACGTT | 2 cut(s) | 858, 1200 |
| AclWI | GGATC | 6 cut(s) | 111, 188, 832, 2108, 3813, 3826 |
| AcoI | YGGCCR | 1 cut(s) | 3758 |
| AcsI | RAATTY | 9 cut(s) | 310, 428, 639, 732, 970, 1936, 2572, 2740, 3383 |
| AcuI | CTGAAG | 2 cut(s) | 525, 1539 |
| AcvI | CACGTG | 1 cut(s) | 2172 |
| AcyI | GRCGYC | 1 cut(s) | 3111 |
| AfaI | GTAC | 6 cut(s) | 1036, 1506, 1690, 2618, 3303, 3694 |
| AfeI | AGCGCT | 1 cut(s) | 2506 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 424, 983, 2295 |
| AflIII | ACRYGT | 2 cut(s) | 1219, 2169 |
| AgeI | ACCGGT | 1 cut(s) | 2365 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2874 |
| AhlI | ACTAGT | 1 cut(s) | 3763 |
| AjnI | CCWGG | 4 cut(s) | 196, 718, 1004, 1996 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3131, 3163 |
| Alw21I | GWGCWC | 3 cut(s) | 790, 2991, 3888 |
| Alw26I | GTCTC | 9 cut(s) | 55, 242, 989, 1672, 2252, 2643, 2811, 2897, 3584 |
| AlwI | GGATC | 6 cut(s) | 111, 188, 832, 2108, 3813, 3826 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3909 |
| Aor51HI | AGCGCT | 1 cut(s) | 2506 |
| AoxI | GGCC | 5 cut(s) | 634, 1604, 2280, 2722, 3758 |
| ApoI | RAATTY | 9 cut(s) | 310, 428, 639, 732, 970, 1936, 2572, 2740, 3383 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1807, 1839, 2621, 2653 |
| AseI | ATTAAT | 1 cut(s) | 519 |
| AsiGI | ACCGGT | 1 cut(s) | 2365 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1200, 2180, 2238, 2355, 3730 |
| Asp718I | GGTACC | 1 cut(s) | 3301 |
| AspLEI | GCGC | 2 cut(s) | 403, 2507 |
| AspS9I | GGNCC | 4 cut(s) | 151, 634, 2280, 2912 |
| AsuC2I | CCSGG | 3 cut(s) | 1206, 1845, 3098 |
| AsuII | TTCGAA | 1 cut(s) | 2693 |
| AsuNHI | GCTAGC | 1 cut(s) | 1187 |
| AvaII | GGWCC | 2 cut(s) | 151, 2912 |
| AxyI | CCTNAGG | 1 cut(s) | 469 |
| BalI | TGGCCA | 1 cut(s) | 3760 |
| BamHI | GGATCC | 1 cut(s) | 3818 |
| BanI | GGYRCC | 2 cut(s) | 3301, 3860 |
| BanII | GRGCYC | 3 cut(s) | 790, 1362, 3888 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2343, 2375 |
| BauI | CACGAG | 1 cut(s) | 3581 |
| BbrPI | CACGTG | 1 cut(s) | 2172 |
| BbsI | GAAGAC | 4 cut(s) | 626, 1028, 2873, 3093 |
| Bbv12I | GWGCWC | 3 cut(s) | 790, 2991, 3888 |
| BbvCI | CCTCAGC | 1 cut(s) | 3684 |
| BccI | CCATC | 7 cut(s) | 137, 200, 550, 625, 1046, 1795, 2424 |
| BceAI | ACGGC | 5 cut(s) | 306, 1143, 1487, 1620, 2737 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2480, 2514 |
| BciT130I | CCWGG | 4 cut(s) | 198, 720, 1006, 1998 |
| BciVI | GTATCC | 1 cut(s) | 1918 |
| BclI | TGATCA | 1 cut(s) | 2751 |
| BcnI | CCSGG | 3 cut(s) | 1206, 1845, 3098 |
| BcoDI | GTCTC | 9 cut(s) | 55, 242, 989, 1672, 2252, 2643, 2811, 2897, 3584 |
| BcuI | ACTAGT | 1 cut(s) | 3763 |
| BfmI | CTRYAG | 5 cut(s) | 270, 396, 2424, 3216, 3793 |
| BfoI | RGCGCY | 1 cut(s) | 2508 |
| BfuAI | ACCTGC | 1 cut(s) | 175 |
| BfuI | GTATCC | 1 cut(s) | 1918 |
| BglII | AGATCT | 3 cut(s) | 940, 1735, 2418 |
| BlpI | GCTNAGC | 1 cut(s) | 2199 |
| Bme1390I | CCNGG | 7 cut(s) | 198, 720, 1006, 1206, 1845, 1998, 3098 |
| Bme18I | GGWCC | 2 cut(s) | 151, 2912 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2874 |
| BmgT120I | GGNCC | 4 cut(s) | 151, 634, 2280, 2912 |
| BmiI | GGNNCC | 3 cut(s) | 3303, 3820, 3862 |
| BmrFI | CCNGG | 7 cut(s) | 198, 720, 1006, 1206, 1845, 1998, 3098 |
| BmrI | ACTGGG | 1 cut(s) | 3051 |
| BmsI | GCATC | 9 cut(s) | 621, 991, 1534, 1781, 2141, 2488, 2650, 3397, 3406 |
| BmtI | GCTAGC | 1 cut(s) | 1191 |
| BmuI | ACTGGG | 1 cut(s) | 3051 |
| BpiI | GAAGAC | 4 cut(s) | 626, 1028, 2873, 3093 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1760, 1792 |
| BpmI | CTGGAG | 3 cut(s) | 219, 1027, 2917 |
| Bpu10I | CCTNAGC | 5 cut(s) | 654, 1871, 2118, 3684, 3824 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2199 |
| Bpu14I | TTCGAA | 1 cut(s) | 2693 |
| BpuEI | CTTGAG | 9 cut(s) | 551, 807, 1724, 2571, 2576, 2633, 2795, 3770, 3872 |
| BpuMI | CCSGG | 3 cut(s) | 1206, 1845, 3098 |
| BsaAI | YACGTR | 2 cut(s) | 2172, 3608 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2610 |
| BsaHI | GRCGYC | 1 cut(s) | 3111 |
| BsaI | GGTCTC | 4 cut(s) | 2252, 2811, 2897, 3584 |
| BsaJI | CCNNGG | 6 cut(s) | 684, 1997, 2289, 2949, 3063, 3138 |
| BsaWI | WCCGGW | 1 cut(s) | 2365 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 424, 983, 2295 |
| Bse118I | RCCGGY | 2 cut(s) | 2365, 3863 |
| Bse1I | ACTGG | 6 cut(s) | 2169, 2300, 2308, 2732, 2751, 3046 |
| Bse21I | CCTNAGG | 1 cut(s) | 469 |
| Bse3DI | GCAATG | 1 cut(s) | 1146 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2610 |
| BseBI | CCWGG | 4 cut(s) | 198, 720, 1006, 1998 |
| BseDI | CCNNGG | 6 cut(s) | 684, 1997, 2289, 2949, 3063, 3138 |
| BseGI | GGATG | 3 cut(s) | 1772, 2132, 2435 |
| BseJI | GATNNNNATC | 1 cut(s) | 2610 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 424, 983, 2295 |
| BseMI | GCAATG | 1 cut(s) | 1146 |
| BseMII | CTCAG | 9 cut(s) | 483, 1903, 1940, 2132, 2190, 2918, 3429, 3698, 3736 |
| BseNI | ACTGG | 6 cut(s) | 2169, 2300, 2308, 2732, 2751, 3046 |
| BseRI | GAGGAG | 2 cut(s) | 457, 2935 |
| BseYI | CCCAGC | 1 cut(s) | 3151 |
| BshFI | GGCC | 5 cut(s) | 636, 1606, 2282, 2724, 3760 |
| BshNI | GGYRCC | 2 cut(s) | 3301, 3860 |
| BshTI | ACCGGT | 1 cut(s) | 2365 |
| BsiHKAI | GWGCWC | 3 cut(s) | 790, 2991, 3888 |
| BsiSI | CCGG | 7 cut(s) | 992, 1205, 1844, 1922, 2366, 3098, 3864 |
| BslFI | GGGAC | 2 cut(s) | 902, 2317 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 424, 983, 2295 |
| BsmAI | GTCTC | 9 cut(s) | 55, 242, 989, 1672, 2252, 2643, 2811, 2897, 3584 |
| BsmBI | CGTCTC | 1 cut(s) | 242 |
| BsmFI | GGGAC | 2 cut(s) | 902, 2317 |
| BsmI | GAATGC | 3 cut(s) | 1168, 1482, 2550 |
| BsnI | GGCC | 5 cut(s) | 636, 1606, 2282, 2724, 3760 |
| Bso31I | GGTCTC | 4 cut(s) | 2252, 2811, 2897, 3584 |
| Bsp119I | TTCGAA | 1 cut(s) | 2693 |
| Bsp1286I | GDGCHC | 4 cut(s) | 790, 1362, 2991, 3888 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2199 |
| Bsp19I | CCATGG | 1 cut(s) | 2289 |
| BspACI | CCGC | 5 cut(s) | 365, 600, 609, 1547, 2315 |
| BspANI | GGCC | 5 cut(s) | 636, 1606, 2282, 2724, 3760 |
| BspCNI | CTCAG | 9 cut(s) | 482, 1902, 1941, 2131, 2191, 2919, 3430, 3697, 3735 |
| BspLI | GGNNCC | 3 cut(s) | 3303, 3820, 3862 |
| BspMAI | CTGCAG | 1 cut(s) | 3220 |
| BspMI | ACCTGC | 1 cut(s) | 175 |
| BspOI | GCTAGC | 1 cut(s) | 1191 |
| BspPI | GGATC | 6 cut(s) | 111, 188, 832, 2108, 3813, 3826 |
| BspQI | GCTCTTC | 1 cut(s) | 311 |
| BspT104I | TTCGAA | 1 cut(s) | 2693 |
| BspT107I | GGYRCC | 2 cut(s) | 3301, 3860 |
| BspTNI | GGTCTC | 4 cut(s) | 2252, 2811, 2897, 3584 |
| BsrDI | GCAATG | 1 cut(s) | 1146 |
| BsrFI | RCCGGY | 2 cut(s) | 2365, 3863 |
| BsrI | ACTGG | 6 cut(s) | 2169, 2300, 2308, 2732, 2751, 3046 |
| BssAI | RCCGGY | 2 cut(s) | 2365, 3863 |
| BssECI | CCNNGG | 6 cut(s) | 684, 1997, 2289, 2949, 3063, 3138 |
| BssNAI | GTATAC | 2 cut(s) | 681, 2309 |
| BssNI | GRCGYC | 1 cut(s) | 3111 |
| BssSI | CACGAG | 1 cut(s) | 3581 |
| BssT1I | CCWWGG | 5 cut(s) | 684, 2289, 2949, 3063, 3138 |
| Bst1107I | GTATAC | 2 cut(s) | 681, 2309 |
| Bst2BI | CACGAG | 1 cut(s) | 3581 |
| Bst2UI | CCWGG | 4 cut(s) | 198, 720, 1006, 1998 |
| Bst6I | CTCTTC | 7 cut(s) | 311, 654, 1515, 2022, 2171, 2229, 3366 |
| BstACI | GRCGYC | 1 cut(s) | 3111 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2507, 3416 |
| BstBAI | YACGTR | 2 cut(s) | 2172, 3608 |
| BstBI | TTCGAA | 1 cut(s) | 2693 |
| BstC8I | GCNNGC | 7 cut(s) | 289, 1189, 1269, 1703, 2466, 2503, 2847 |
| BstDSI | CCRYGG | 1 cut(s) | 2289 |
| BstF5I | GGATG | 3 cut(s) | 1772, 2132, 2435 |
| BstH2I | RGCGCY | 1 cut(s) | 2508 |
| BstHHI | GCGC | 2 cut(s) | 403, 2507 |
| BstMAI | GTCTC | 9 cut(s) | 55, 242, 989, 1672, 2252, 2643, 2811, 2897, 3584 |
| BstNI | CCWGG | 4 cut(s) | 198, 720, 1006, 1998 |
| BstNSI | RCATGY | 2 cut(s) | 1223, 2468 |
| BstSCI | CCNGG | 7 cut(s) | 196, 718, 1004, 1204, 1843, 1996, 3096 |
| BstSFI | CTRYAG | 5 cut(s) | 270, 396, 2424, 3216, 3793 |
| BstSNI | TACGTA | 1 cut(s) | 3608 |
| BstV2I | GAAGAC | 4 cut(s) | 626, 1028, 2873, 3093 |
| BstX2I | RGATCY | 7 cut(s) | 103, 837, 940, 1735, 2100, 2418, 3818 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 458, 2290 |
| BstYI | RGATCY | 7 cut(s) | 103, 837, 940, 1735, 2100, 2418, 3818 |
| BstZ17I | GTATAC | 2 cut(s) | 681, 2309 |
| Bsu36I | CCTNAGG | 1 cut(s) | 469 |
| BsuI | GTATCC | 1 cut(s) | 1918 |
| BsuRI | GGCC | 5 cut(s) | 636, 1606, 2282, 2724, 3760 |
| BtgI | CCRYGG | 1 cut(s) | 2289 |
| BtsCI | GGATG | 3 cut(s) | 1772, 2132, 2435 |
| BtsI | GCAGTG | 1 cut(s) | 1817 |
| BveI | ACCTGC | 1 cut(s) | 175 |
| Cac8I | GCNNGC | 7 cut(s) | 289, 1189, 1269, 1703, 2466, 2503, 2847 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3909 |
| CfoI | GCGC | 2 cut(s) | 403, 2507 |
| Cfr10I | RCCGGY | 2 cut(s) | 2365, 3863 |
| Cfr13I | GGNCC | 4 cut(s) | 151, 634, 2280, 2912 |
| CseI | GACGC | 4 cut(s) | 119, 1811, 2067, 3466 |
| Csp6I | GTAC | 6 cut(s) | 1035, 1505, 1689, 2617, 3302, 3693 |
| CspAI | ACCGGT | 1 cut(s) | 2365 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2258, 2293 |
| CviQI | GTAC | 6 cut(s) | 1035, 1505, 1689, 2617, 3302, 3693 |
| DraI | TTTAAA | 2 cut(s) | 183, 1366 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2874 |
| EaeI | YGGCCR | 1 cut(s) | 3758 |
| Eam1104I | CTCTTC | 7 cut(s) | 311, 654, 1515, 2022, 2171, 2229, 3366 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2874 |
| EarI | CTCTTC | 7 cut(s) | 311, 654, 1515, 2022, 2171, 2229, 3366 |
| EciI | GGCGGA | 1 cut(s) | 380 |
| Ecl136II | GAGCTC | 2 cut(s) | 788, 3886 |
| Eco105I | TACGTA | 1 cut(s) | 3608 |
| Eco130I | CCWWGG | 5 cut(s) | 684, 2289, 2949, 3063, 3138 |
| Eco24I | GRGCYC | 3 cut(s) | 790, 1362, 3888 |
| Eco31I | GGTCTC | 4 cut(s) | 2252, 2811, 2897, 3584 |
| Eco32I | GATATC | 1 cut(s) | 3522 |
| Eco47I | GGWCC | 2 cut(s) | 151, 2912 |
| Eco47III | AGCGCT | 1 cut(s) | 2506 |
| Eco53kI | GAGCTC | 2 cut(s) | 788, 3886 |
| Eco57I | CTGAAG | 2 cut(s) | 525, 1539 |
| Eco72I | CACGTG | 1 cut(s) | 2172 |
| Eco81I | CCTNAGG | 1 cut(s) | 469 |
| EcoICRI | GAGCTC | 2 cut(s) | 788, 3886 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2912 |
| EcoRI | GAATTC | 2 cut(s) | 428, 2740 |
| EcoRII | CCWGG | 4 cut(s) | 196, 718, 1004, 1996 |
| EcoRV | GATATC | 1 cut(s) | 3522 |
| EcoT14I | CCWWGG | 5 cut(s) | 684, 2289, 2949, 3063, 3138 |
| EcoT22I | ATGCAT | 1 cut(s) | 1482 |
| EcoT38I | GRGCYC | 3 cut(s) | 790, 1362, 3888 |
| ErhI | CCWWGG | 5 cut(s) | 684, 2289, 2949, 3063, 3138 |
| Esp3I | CGTCTC | 1 cut(s) | 242 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 729, 761, 2235, 2267 |
| FaqI | GGGAC | 2 cut(s) | 902, 2317 |
| FauNDI | CATATG | 4 cut(s) | 596, 1342, 2037, 3344 |
| FbaI | TGATCA | 1 cut(s) | 2751 |
| FblI | GTMKAC | 5 cut(s) | 225, 680, 2081, 2145, 2308 |
| FokI | GGATG | 3 cut(s) | 1759, 2119, 2442 |
| FriOI | GRGCYC | 3 cut(s) | 790, 1362, 3888 |
| GlaI | GCGC | 2 cut(s) | 402, 2506 |
| GsaI | CCCAGC | 1 cut(s) | 3155 |
| GsuI | CTGGAG | 3 cut(s) | 219, 1027, 2917 |
| HaeII | RGCGCY | 1 cut(s) | 2508 |
| HaeIII | GGCC | 5 cut(s) | 636, 1606, 2282, 2724, 3760 |
| HapII | CCGG | 7 cut(s) | 992, 1205, 1844, 1922, 2366, 3098, 3864 |
| HgaI | GACGC | 4 cut(s) | 119, 1811, 2067, 3466 |
| HhaI | GCGC | 2 cut(s) | 403, 2507 |
| Hin1I | GRCGYC | 1 cut(s) | 3111 |
| Hin6I | GCGC | 2 cut(s) | 401, 2505 |
| HinP1I | GCGC | 2 cut(s) | 401, 2505 |
| HincII | GTYRAC | 4 cut(s) | 1664, 2082, 3015, 3254 |
| HindII | GTYRAC | 4 cut(s) | 1664, 2082, 3015, 3254 |
| HindIII | AAGCTT | 5 cut(s) | 177, 1979, 3034, 3587, 3727 |
| HpaII | CCGG | 7 cut(s) | 992, 1205, 1844, 1922, 2366, 3098, 3864 |
| Hpy99I | CGWCG | 4 cut(s) | 2083, 2803, 3404, 3460 |
| HpyAV | CCTTC | 7 cut(s) | 330, 449, 500, 1078, 1382, 1820, 3235 |
| HpyCH4IV | ACGT | 7 cut(s) | 808, 858, 1200, 1763, 2171, 3111, 3607 |
| HpySE526I | ACGT | 7 cut(s) | 808, 858, 1200, 1763, 2171, 3111, 3607 |
| Hsp92I | GRCGYC | 1 cut(s) | 3111 |
| HspAI | GCGC | 2 cut(s) | 401, 2505 |
| KpnI | GGTACC | 1 cut(s) | 3305 |
| Ksp22I | TGATCA | 1 cut(s) | 2751 |
| LguI | GCTCTTC | 1 cut(s) | 311 |
| LmnI | GCTCC | 7 cut(s) | 378, 470, 721, 793, 2317, 2948, 3883 |
| LweI | GCATC | 9 cut(s) | 621, 991, 1534, 1781, 2141, 2488, 2650, 3397, 3406 |
| MaeII | ACGT | 7 cut(s) | 808, 858, 1200, 1763, 2171, 3111, 3607 |
| MaeIII | GTNAC | 7 cut(s) | 922, 1336, 1832, 2380, 3021, 3281, 3608 |
| MfeI | CAATTG | 4 cut(s) | 1916, 2095, 2108, 3567 |
| MflI | RGATCY | 7 cut(s) | 103, 837, 940, 1735, 2100, 2418, 3818 |
| MhlI | GDGCHC | 4 cut(s) | 790, 1362, 2991, 3888 |
| MlsI | TGGCCA | 1 cut(s) | 3760 |
| MluNI | TGGCCA | 1 cut(s) | 3760 |
| MlyI | GAGTC | 5 cut(s) | 349, 1018, 3010, 3449, 3457 |
| MmeI | TCCRAC | 3 cut(s) | 457, 1102, 1746 |
| Mox20I | TGGCCA | 1 cut(s) | 3760 |
| Mph1103I | ATGCAT | 1 cut(s) | 1482 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1200, 2180, 2238, 2355, 3730 |
| MscI | TGGCCA | 1 cut(s) | 3760 |
| MslI | CAYNNNNRTG | 1 cut(s) | 456 |
| Msp20I | TGGCCA | 1 cut(s) | 3760 |
| MspI | CCGG | 7 cut(s) | 992, 1205, 1844, 1922, 2366, 3098, 3864 |
| MspR9I | CCNGG | 7 cut(s) | 198, 720, 1006, 1206, 1845, 1998, 3098 |
| MunI | CAATTG | 4 cut(s) | 1916, 2095, 2108, 3567 |
| Mva1269I | GAATGC | 3 cut(s) | 1168, 1482, 2550 |
| MvaI | CCWGG | 4 cut(s) | 198, 720, 1006, 1998 |
| NciI | CCSGG | 3 cut(s) | 1206, 1845, 3098 |
| NcoI | CCATGG | 1 cut(s) | 2289 |
| NdeI | CATATG | 4 cut(s) | 596, 1342, 2037, 3344 |
| NheI | GCTAGC | 1 cut(s) | 1187 |
| NlaIV | GGNNCC | 3 cut(s) | 3303, 3820, 3862 |
| NmuCI | GTSAC | 4 cut(s) | 922, 1832, 3021, 3281 |
| NsiI | ATGCAT | 1 cut(s) | 1482 |
| NspI | RCATGY | 2 cut(s) | 1223, 2468 |
| NspV | TTCGAA | 1 cut(s) | 2693 |
| PaeI | GCATGC | 1 cut(s) | 2468 |
| PciI | ACATGT | 1 cut(s) | 1219 |
| PciSI | GCTCTTC | 1 cut(s) | 311 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 127 |
| PctI | GAATGC | 3 cut(s) | 1168, 1482, 2550 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1200, 2180, 2238, 2355, 3730 |
| PflFI | GACNNNGTC | 2 cut(s) | 2803, 3019 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2295 |
| PfoI | TCCNGGA | 2 cut(s) | 196, 1204 |
| PinAI | ACCGGT | 1 cut(s) | 2365 |
| PleI | GAGTC | 5 cut(s) | 349, 1017, 3010, 3448, 3456 |
| PmaCI | CACGTG | 1 cut(s) | 2172 |
| PmlI | CACGTG | 1 cut(s) | 2172 |
| PpsI | GAGTC | 5 cut(s) | 349, 1017, 3010, 3448, 3456 |
| Ppu21I | YACGTR | 2 cut(s) | 2172, 3608 |
| PpuMI | RGGWCCY | 1 cut(s) | 2912 |
| PscI | ACATGT | 1 cut(s) | 1219 |
| PshBI | ATTAAT | 1 cut(s) | 519 |
| Psp124BI | GAGCTC | 2 cut(s) | 790, 3888 |
| Psp1406I | AACGTT | 2 cut(s) | 858, 1200 |
| Psp5II | RGGWCCY | 1 cut(s) | 2912 |
| Psp6I | CCWGG | 4 cut(s) | 196, 718, 1004, 1996 |
| PspCI | CACGTG | 1 cut(s) | 2172 |
| PspFI | CCCAGC | 1 cut(s) | 3151 |
| PspGI | CCWGG | 4 cut(s) | 196, 718, 1004, 1996 |
| PspN4I | GGNNCC | 3 cut(s) | 3303, 3820, 3862 |
| PspPI | GGNCC | 4 cut(s) | 151, 634, 2280, 2912 |
| PspPPI | RGGWCCY | 1 cut(s) | 2912 |
| PstI | CTGCAG | 1 cut(s) | 3220 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3909 |
| PsuI | RGATCY | 7 cut(s) | 103, 837, 940, 1735, 2100, 2418, 3818 |
| PsyI | GACNNNGTC | 2 cut(s) | 2803, 3019 |
| RsaI | GTAC | 6 cut(s) | 1036, 1506, 1690, 2618, 3303, 3694 |
| RsaNI | GTAC | 6 cut(s) | 1035, 1505, 1689, 2617, 3302, 3693 |
| RseI | CAYNNNNRTG | 1 cut(s) | 456 |
| SacI | GAGCTC | 2 cut(s) | 790, 3888 |
| SalI | GTCGAC | 1 cut(s) | 2080 |
| SapI | GCTCTTC | 1 cut(s) | 311 |
| Sau96I | GGNCC | 4 cut(s) | 151, 634, 2280, 2912 |
| SchI | GAGTC | 5 cut(s) | 349, 1018, 3010, 3449, 3457 |
| ScrFI | CCNGG | 7 cut(s) | 198, 720, 1006, 1206, 1845, 1998, 3098 |
| SduI | GDGCHC | 4 cut(s) | 790, 1362, 2991, 3888 |
| SfaNI | GCATC | 9 cut(s) | 621, 991, 1534, 1781, 2141, 2488, 2650, 3397, 3406 |
| SfcI | CTRYAG | 5 cut(s) | 270, 396, 2424, 3216, 3793 |
| SfuI | TTCGAA | 1 cut(s) | 2693 |
| SinI | GGWCC | 2 cut(s) | 151, 2912 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 456 |
| SmlI | CTYRAG | 9 cut(s) | 566, 822, 1739, 2555, 2586, 2648, 2810, 3785, 3887 |
| SmoI | CTYRAG | 9 cut(s) | 566, 822, 1739, 2555, 2586, 2648, 2810, 3785, 3887 |
| SnaBI | TACGTA | 1 cut(s) | 3608 |
| SpeI | ACTAGT | 1 cut(s) | 3763 |
| SphI | GCATGC | 1 cut(s) | 2468 |
| SsiI | CCGC | 5 cut(s) | 365, 600, 609, 1547, 2315 |
| SspI | AATATT | 1 cut(s) | 517 |
| SstI | GAGCTC | 2 cut(s) | 790, 3888 |
| StyD4I | CCNGG | 7 cut(s) | 196, 718, 1004, 1204, 1843, 1996, 3096 |
| StyI | CCWWGG | 5 cut(s) | 684, 2289, 2949, 3063, 3138 |
| TaiI | ACGT | 7 cut(s) | 811, 861, 1203, 1766, 2174, 3114, 3610 |
| TatI | WGTACW | 2 cut(s) | 1688, 3692 |
| TauI | GCSGC | 2 cut(s) | 603, 612 |
| TseFI | GTSAC | 4 cut(s) | 922, 1832, 3021, 3281 |
| Tsp45I | GTSAC | 4 cut(s) | 922, 1832, 3021, 3281 |
| TspGWI | ACGGA | 1 cut(s) | 713 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2803, 3019 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2295 |
| VpaK11BI | GGWCC | 2 cut(s) | 151, 2912 |
| VspI | ATTAAT | 1 cut(s) | 519 |
| XapI | RAATTY | 9 cut(s) | 310, 428, 639, 732, 970, 1936, 2572, 2740, 3383 |
| XbaI | TCTAGA | 2 cut(s) | 1051, 1825 |
| XceI | RCATGY | 2 cut(s) | 1223, 2468 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 36 |
| XmiI | GTMKAC | 5 cut(s) | 225, 680, 2081, 2145, 2308 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1200, 2180, 2238, 2355, 3730 |
| ZraI | GACGTC | 1 cut(s) | 3112 |
| Zsp2I | ATGCAT | 1 cut(s) | 1482 |