RLG00000035489

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000203
Physical Location & Seq
Reverse (-)
67600574 .. 67601566
993 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035489

Sequence Viewer

Length: 732 bp
ATGAACCTAAAAGAGATATGGAACAGCCAACTTTCTGCAGAATCCTTCTGTGAACTACGGGTGAGCGAATGTCAACTAAAATCTCTATGGGTGAGCGAATGTCACAAACTGTTGCGTTTGGTACCAGCATATATGCAAAATAGATTGCAGAAATTGGAATACATATGGGCATGGCACTGTTCTTCACTAGAAGAGATTTTTGAATTTAGAAGATTGACCATCGATGATGCAGGAGATGCTGCTGCTTTAACAATTTCTGAGTCAGGGAATCAAGGGACGCAAATGAACAAGATGATGTCTTTTAAACAATCTGGTCAAGCTTTTCAGAATCTTAGACAGATGTCAATTTTGTTTTGTGAAAGTTTGAGAACTCTGCTCTCTCCCTCTATTGCCAGAGGTCTCGTGAAGCTTCAAATACTAATGATACGTAACTGCAAGAAGATTGAAGAAGTAGTTGCAACAGCAGCAGAGGGTGAAGAAACAAATGATGACACCTTGTTCCCTCAGCTATGTACTTTGACACTTGACGATCTACCAAATCTCAGAAGCTTTTCGCAAGGTAAAGATAATTTCAAATGGCCACTATTGAAATACATAAAAATCCTCAAATGCTACAATATGAAGAAGTTTTGTTTTGGATCCCTAAGCACACCAAAGGAAGTGAACATTGGTGTCAAAGGTGCCGGTGAGAGTGTTTTGCAGGAGCTCAATAACAGTAGAAACAGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

244

Amino Acids

27.8

Weight (kDa)

8.33

Isoelectric Point (pI)

59.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 2 - 146 9e-20 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 121
AccB1I GGYRCC 2 cut(s) 121, 680
AclWI GGATC 2 cut(s) 633, 646
AcoI YGGCCR 1 cut(s) 578
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 2 cut(s) 123, 514
AgsI TTSAA 5 cut(s) 203, 413, 446, 574, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 651, 683
AluBI AGCT 5 cut(s) 320, 409, 508, 549, 706
AluI AGCT 5 cut(s) 320, 409, 508, 549, 706
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 1 cut(s) 404
AlwI GGATC 2 cut(s) 633, 646
AlwNI CAGNNNCTG 1 cut(s) 729
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 3 cut(s) 239, 242, 464
ApoI RAATTY 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 550
Asp718I GGTACC 1 cut(s) 121
AsuHPI GGTGA 4 cut(s) 73, 103, 485, 698
BalI TGGCCA 1 cut(s) 580
BamHI GGATCC 1 cut(s) 638
BanI GGYRCC 2 cut(s) 121, 680
BanII GRGCYC 1 cut(s) 708
BauI CACGAG 1 cut(s) 401
Bbv12I GWGCWC 1 cut(s) 708
BbvCI CCTCAGC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 226, 229, 476
BccI CCATC 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 3 cut(s) 240, 243, 465
BlsI GCNGC 3 cut(s) 241, 244, 466
BmiI GGNNCC 3 cut(s) 123, 640, 682
BmsI GCATC 2 cut(s) 217, 226
BoxI GACNNNNGTC 1 cut(s) 340
Bpu10I CCTNAGC 2 cut(s) 504, 644
Bsa29I ATCGAT 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 428
BsaI GGTCTC 1 cut(s) 404
Bse118I RCCGGY 1 cut(s) 683
BseCI ATCGAT 1 cut(s) 222
BseMII CTCAG 3 cut(s) 249, 518, 556
BseXI GCAGC 3 cut(s) 226, 229, 476
BshFI GGCC 1 cut(s) 580
BshNI GGYRCC 2 cut(s) 121, 680
BshVI ATCGAT 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 708
BsiSI CCGG 1 cut(s) 684
BslFI GGGAC 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 289
BsnI GGCC 1 cut(s) 580
Bso31I GGTCTC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 708
Bsp143I GATC 2 cut(s) 529, 638
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 3 cut(s) 250, 517, 555
BspDI ATCGAT 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 123, 640, 682
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 2 cut(s) 633, 646
BspT107I GGYRCC 2 cut(s) 121, 680
BspTNI GGTCTC 1 cut(s) 404
BsrFI RCCGGY 1 cut(s) 683
BssAI RCCGGY 1 cut(s) 683
BssMI GATC 2 cut(s) 529, 638
BssSI CACGAG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 401
Bst4CI ACNGT 3 cut(s) 111, 179, 716
Bst6I CTCTTC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 428
BstDEI CTNAG 5 cut(s) 258, 332, 504, 542, 644
BstKTI GATC 2 cut(s) 532, 641
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 2 cut(s) 529, 638
BstMWI GCNNNNNNNGC 2 cut(s) 236, 464
BstPAI GACNNNNGTC 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 36
BstSNI TACGTA 1 cut(s) 428
BstV1I GCAGC 3 cut(s) 226, 229, 476
BstX2I RGATCY 1 cut(s) 638
BstYI RGATCY 1 cut(s) 638
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 1 cut(s) 580
BsuTUI ATCGAT 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 175
CaiI CAGNNNCTG 1 cut(s) 729
Cfr10I RCCGGY 1 cut(s) 683
ClaI ATCGAT 1 cut(s) 222
CseI GACGC 1 cut(s) 286
Csp6I GTAC 2 cut(s) 122, 513
CviAII CATG 1 cut(s) 171
CviJI RGCY 7 cut(s) 27, 320, 409, 508, 549, 580, 706
CviKI_1 RGCY 7 cut(s) 27, 320, 409, 508, 549, 580, 706
CviQI GTAC 2 cut(s) 122, 513
DdeI CTNAG 5 cut(s) 258, 332, 504, 542, 644
DpnI GATC 2 cut(s) 531, 640
DpnII GATC 2 cut(s) 529, 638
DraI TTTAAA 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Ecl136II GAGCTC 1 cut(s) 706
Eco105I TACGTA 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 708
Eco31I GGTCTC 1 cut(s) 404
Eco53kI GAGCTC 1 cut(s) 706
EcoICRI GAGCTC 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 708
FaeI CATG 1 cut(s) 174
FaqI GGGAC 1 cut(s) 289
FatI CATG 1 cut(s) 170
FauNDI CATATG 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 240, 243, 465
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 3 cut(s) 240, 243, 465
FspBI CTAG 1 cut(s) 188
GluI GCNGC 3 cut(s) 240, 243, 465
HaeIII GGCC 1 cut(s) 580
HapII CCGG 1 cut(s) 684
HgaI GACGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 174
HincII GTYRAC 1 cut(s) 74
HindII GTYRAC 1 cut(s) 74
HindIII AAGCTT 3 cut(s) 318, 407, 547
HinfI GANTC 5 cut(s) 41, 260, 268, 328, 726
HpaII CCGG 1 cut(s) 684
HphI GGTGA 4 cut(s) 73, 103, 485, 698
Hpy166II GTNNAC 3 cut(s) 53, 74, 664
Hpy188I TCNGA 4 cut(s) 259, 327, 545, 731
Hpy188III TCNNGA 1 cut(s) 403
Hpy8I GTNNAC 3 cut(s) 53, 74, 664
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 3 cut(s) 111, 179, 716
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 7 cut(s) 38, 136, 148, 230, 435, 458, 700
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 464
HpyF3I CTNAG 5 cut(s) 258, 332, 504, 542, 644
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 1 cut(s) 174
KpnI GGTACC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 529, 638
LmnI GCTCC 1 cut(s) 703
LpnPI CCDG 7 cut(s) 138, 216, 249, 297, 406, 686, 697
Lsp1109I GCAGC 3 cut(s) 226, 229, 476
LweI GCATC 2 cut(s) 217, 226
MaeI CTAG 1 cut(s) 188
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 2 cut(s) 101, 428
MalI GATC 2 cut(s) 531, 640
MboI GATC 2 cut(s) 529, 638
MboII GAAGA 7 cut(s) 174, 203, 222, 451, 458, 488, 634
MflI RGATCY 1 cut(s) 638
MhlI GDGCHC 1 cut(s) 708
MlsI TGGCCA 1 cut(s) 580
MluCI AATT 5 cut(s) 152, 203, 252, 345, 568
MluNI TGGCCA 1 cut(s) 580
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 5 cut(s) 389, 394, 463, 513, 614
Mox20I TGGCCA 1 cut(s) 580
MroXI GAANNNNTTC 1 cut(s) 550
MscI TGGCCA 1 cut(s) 580
MseI TTAA 2 cut(s) 248, 303
Msp20I TGGCCA 1 cut(s) 580
MspI CCGG 1 cut(s) 684
MwoI GCNNNNNNNGC 2 cut(s) 236, 464
NdeI CATATG 1 cut(s) 164
NdeII GATC 2 cut(s) 529, 638
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 3 cut(s) 123, 640, 682
NmuCI GTSAC 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 4 cut(s) 41, 268, 328, 726
PkrI GCNGC 3 cut(s) 241, 244, 466
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
Ppu21I YACGTR 1 cut(s) 428
PshAI GACNNNNGTC 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 708
PspN4I GGNNCC 3 cut(s) 123, 640, 682
PstI CTGCAG 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 729
PsuI RGATCY 1 cut(s) 638
RsaI GTAC 2 cut(s) 123, 514
RsaNI GTAC 2 cut(s) 122, 513
SacI GAGCTC 1 cut(s) 708
SaqAI TTAA 2 cut(s) 248, 303
SatI GCNGC 3 cut(s) 240, 243, 465
Sau3AI GATC 2 cut(s) 529, 638
SchI GAGTC 1 cut(s) 269
SduI GDGCHC 1 cut(s) 708
SfaNI GCATC 2 cut(s) 217, 226
SfcI CTRYAG 1 cut(s) 36
SnaBI TACGTA 1 cut(s) 428
Sse9I AATT 5 cut(s) 152, 203, 252, 345, 568
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 708
TaaI ACNGT 3 cut(s) 111, 179, 716
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 222
TasI AATT 5 cut(s) 152, 203, 252, 345, 568
TatI WGTACW 1 cut(s) 512
TfiI GAWTC 4 cut(s) 41, 268, 328, 726
Tru1I TTAA 2 cut(s) 248, 303
Tru9I TTAA 2 cut(s) 248, 303
TscAI CASTG 1 cut(s) 182
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 3 cut(s) 239, 242, 464
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 3 cut(s) 17, 299, 635
TspRI CASTG 1 cut(s) 182
XapI RAATTY 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 550
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.