RLG00000008660

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000203
Physical Location & Seq
Forward (+)
34513083 .. 34514852
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008660

Sequence Viewer

Length: 963 bp
ATGGTGGTGAGAAGCTGTAACAATCTACATGGTGTTTTCTCATCGAGTGTGGTGCAAAACTTACAGAATCTTGAACAACTTGAAGTAACGTCTTGTGACTCACTGGAAACAGTATTTGAGCTTGAAGGTTTAGAAATGAAAGAAAACGATGGTGTTACTGCAACACTATTGTCTTGCTTGGAGAGACTGGAGTTGGATAATCTACCCAAGTTGGCATACTTGAGGAAGCCACCTCAAAACATTCTGGCATTTCAAAACTTAACAGTGCTGTATGTTCTGCGGTGCAACAGATTGGAATACGTGTTCCCGCTCTTCATAGTGGAAGGTCTAGTGAAACTAGTAGCCATACTCAAAAGATTTTGTCCTGTTCTATGCACTGTTGACTGCCCATCATTGAAAACACTGACGCTCACCAACCGCGGTGACCTGGAGACATTTGTTCCACCGGTCGTAGCCACAGGAAGTGACCTGATCTACCTTTTTGGTGAACAGGTTGACTTTCCAGTTTTGGAGACACTAGAACTTCGTTACATGCGCCACTTCAAAGAGATATGGAAGAACAAACTTCCACCCCACTCCTTTTGTGAGCTAACAGATCTACACGTGTCACTAAAGAAGATTTTTGAATTGAGAGAATTGTCTGCTGATGAAGGGAAAGCTGTCACCATTTCACAGTCAGGGGAAACATCTTCAATTTCCCAACCTGAACGAATAATAAACCAGATGGATTACAGACTAACCCGAGGCTTTCCAAATTTGACATCTATAAAGATTTCTGGTTGTAACAATTTGAGAAATCTGCTCTCTCTCTCCATTGCCAGAGGTCTGGTGAAGCTCAAAAATCTATCCATAGATTACTGCCAGAAGATGGAAGAACTCATAGCAGCAGATGGCAAGGAAACAGAGGACACGGTGAGTATTAGTGTAAGGCTTGGTAAGATGTTTTTATCGACTTTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

321

Amino Acids

36.16

Weight (kDa)

5.58

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 1 - 116 2.1e-27 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 240 - 288 8e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 868
AccBSI CCGCTC 1 cut(s) 310
AccII CGCG 1 cut(s) 420
AciI CCGC 4 cut(s) 280, 308, 418, 420
AcsI RAATTY 1 cut(s) 754
AcvI CACGTG 1 cut(s) 604
AfiI CCNNNNNNNGG 1 cut(s) 868
AflIII ACRYGT 3 cut(s) 300, 601, 603
AgeI ACCGGT 1 cut(s) 445
AgsI TTSAA 8 cut(s) 74, 83, 125, 254, 397, 544, 626, 693
AhlI ACTAGT 1 cut(s) 337
AjnI CCWGG 1 cut(s) 426
AloI GAACNNNNNNTCC 2 cut(s) 287, 319
AluBI AGCT 5 cut(s) 15, 121, 589, 659, 835
AluI AGCT 5 cut(s) 15, 121, 589, 659, 835
Alw26I GTCTC 3 cut(s) 178, 425, 506
Ama87I CYCGRG 1 cut(s) 741
ApeKI GCWGC 1 cut(s) 884
ApoI RAATTY 1 cut(s) 754
AsiGI ACCGGT 1 cut(s) 445
AspLEI GCGC 1 cut(s) 537
AsuHPI GGTGA 7 cut(s) 19, 403, 434, 497, 655, 841, 925
AvaI CYCGRG 1 cut(s) 741
BbrPI CACGTG 1 cut(s) 604
BbvI GCAGC 1 cut(s) 896
BccI CCATC 5 cut(s) 143, 397, 718, 862, 884
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 1 cut(s) 428
BcoDI GTCTC 3 cut(s) 178, 425, 506
BcuI ACTAGT 1 cut(s) 337
BfaI CTAG 4 cut(s) 329, 338, 518, 961
BglII AGATCT 1 cut(s) 595
BisI GCNGC 1 cut(s) 885
BlsI GCNGC 1 cut(s) 886
Bme1390I CCNGG 1 cut(s) 428
BmeT110I CYCGRG 1 cut(s) 741
BmrFI CCNGG 1 cut(s) 428
BpmI CTGGAG 2 cut(s) 209, 449
BpuEI CTTGAG 1 cut(s) 241
BsaAI YACGTR 2 cut(s) 301, 604
BsaJI CCNNGG 2 cut(s) 418, 742
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 868
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 3 cut(s) 108, 192, 503
Bse3DI GCAATG 1 cut(s) 813
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 2 cut(s) 418, 742
BseLI CCNNNNNNNGG 1 cut(s) 868
BseMI GCAATG 1 cut(s) 813
BseNI ACTGG 3 cut(s) 108, 192, 503
BseXI GCAGC 1 cut(s) 896
Bsh1236I CGCG 1 cut(s) 420
Bsh1285I CGRYCG 1 cut(s) 450
BshTI ACCGGT 1 cut(s) 445
BsiEI CGRYCG 1 cut(s) 450
BsiHKCI CYCGRG 1 cut(s) 741
BsiSI CCGG 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 868
BsmAI GTCTC 3 cut(s) 178, 425, 506
BsoBI CYCGRG 1 cut(s) 741
Bsp143I GATC 2 cut(s) 471, 595
BspACI CCGC 4 cut(s) 280, 308, 418, 420
BspFNI CGCG 1 cut(s) 420
BspQI GCTCTTC 1 cut(s) 317
BsrBI CCGCTC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 3 cut(s) 108, 192, 503
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 418, 742
BssMI GATC 2 cut(s) 471, 595
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 5 cut(s) 112, 265, 379, 675, 913
Bst6I CTCTTC 1 cut(s) 317
BstBAI YACGTR 2 cut(s) 301, 604
BstDSI CCRYGG 1 cut(s) 418
BstEII GGTNACC 1 cut(s) 422
BstFNI CGCG 1 cut(s) 420
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 2 cut(s) 474, 598
BstMAI GTCTC 3 cut(s) 178, 425, 506
BstMBI GATC 2 cut(s) 471, 595
BstMCI CGRYCG 1 cut(s) 450
BstNI CCWGG 1 cut(s) 428
BstNSI RCATGY 1 cut(s) 535
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 426
BstUI CGCG 1 cut(s) 420
BstV1I GCAGC 1 cut(s) 896
BstX2I RGATCY 1 cut(s) 595
BstXI CCANNNNNNTGG 1 cut(s) 826
BstYI RGATCY 1 cut(s) 595
BtgI CCRYGG 1 cut(s) 418
BtsIMutI CAGTG 4 cut(s) 101, 270, 375, 401
CfoI GCGC 1 cut(s) 537
Cfr10I RCCGGY 1 cut(s) 445
Cfr42I CCGCGG 1 cut(s) 421
CseI GACGC 1 cut(s) 415
CspAI ACCGGT 1 cut(s) 445
CspCI CAANNNNNGTGG 2 cut(s) 563, 598
CviAII CATG 2 cut(s) 29, 532
DpnI GATC 2 cut(s) 473, 597
DpnII GATC 2 cut(s) 471, 595
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco72I CACGTG 1 cut(s) 604
Eco88I CYCGRG 1 cut(s) 741
Eco91I GGTNACC 1 cut(s) 422
EcoO65I GGTNACC 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 426
FaeI CATG 2 cut(s) 32, 535
FatI CATG 2 cut(s) 28, 531
FauI CCCGC 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 885
Fsp4HI GCNGC 1 cut(s) 885
FspBI CTAG 4 cut(s) 329, 338, 518, 961
GlaI GCGC 1 cut(s) 536
GluI GCNGC 1 cut(s) 885
GsuI CTGGAG 2 cut(s) 209, 449
HapII CCGG 1 cut(s) 446
HgaI GACGC 1 cut(s) 415
HhaI GCGC 1 cut(s) 537
Hin1II CATG 2 cut(s) 32, 535
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 2 cut(s) 382, 496
HindII GTYRAC 2 cut(s) 382, 496
HinfI GANTC 2 cut(s) 67, 98
HpaII CCGG 1 cut(s) 446
HphI GGTGA 7 cut(s) 19, 403, 434, 497, 655, 841, 925
Hpy166II GTNNAC 3 cut(s) 382, 488, 496
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 3 cut(s) 382, 488, 496
HpyAV CCTTC 3 cut(s) 119, 317, 644
HpyCH4III ACNGT 5 cut(s) 112, 265, 379, 675, 913
HpyCH4IV ACGT 3 cut(s) 89, 300, 603
HpyCH4V TGCA 4 cut(s) 55, 161, 285, 375
HpySE526I ACGT 3 cut(s) 89, 300, 603
Hsp92II CATG 2 cut(s) 32, 535
HspAI GCGC 1 cut(s) 535
KspI CCGCGG 1 cut(s) 421
Kzo9I GATC 2 cut(s) 471, 595
LguI GCTCTTC 1 cut(s) 317
Lsp1109I GCAGC 1 cut(s) 896
MaeI CTAG 4 cut(s) 329, 338, 518, 961
MaeII ACGT 3 cut(s) 89, 300, 603
MalI GATC 2 cut(s) 473, 597
MbiI CCGCTC 1 cut(s) 310
MboI GATC 2 cut(s) 471, 595
MboII GAAGA 6 cut(s) 304, 568, 628, 681, 877, 884
MflI RGATCY 1 cut(s) 595
MluCI AATT 5 cut(s) 626, 635, 693, 754, 787
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 5 cut(s) 216, 243, 737, 815, 898
MseI TTAA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 420
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 1 cut(s) 428
MvaI CCWGG 1 cut(s) 428
MvnI CGCG 1 cut(s) 420
NdeII GATC 2 cut(s) 471, 595
NlaIII CATG 2 cut(s) 32, 535
NmuCI GTSAC 5 cut(s) 95, 422, 464, 606, 661
NspI RCATGY 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 868
PinAI ACCGGT 1 cut(s) 445
PkrI GCNGC 1 cut(s) 886
PleI GAGTC 1 cut(s) 92
PmaCI CACGTG 1 cut(s) 604
PmlI CACGTG 1 cut(s) 604
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 2 cut(s) 301, 604
Psp6I CCWGG 1 cut(s) 426
PspCI CACGTG 1 cut(s) 604
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 1 cut(s) 426
PsuI RGATCY 1 cut(s) 595
SacII CCGCGG 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 317
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 1 cut(s) 885
Sau3AI GATC 2 cut(s) 471, 595
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 428
Sfr303I CCGCGG 1 cut(s) 421
SgrBI CCGCGG 1 cut(s) 421
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
SpeI ACTAGT 1 cut(s) 337
Sse9I AATT 5 cut(s) 626, 635, 693, 754, 787
SsiI CCGC 4 cut(s) 280, 308, 418, 420
SspMI CTAG 4 cut(s) 329, 338, 518, 961
StyD4I CCNGG 1 cut(s) 426
TaaI ACNGT 5 cut(s) 112, 265, 379, 675, 913
TaiI ACGT 3 cut(s) 92, 303, 606
TaqI TCGA 2 cut(s) 44, 950
TasI AATT 5 cut(s) 626, 635, 693, 754, 787
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 4 cut(s) 108, 270, 382, 408
TseFI GTSAC 5 cut(s) 95, 422, 464, 606, 661
TseI GCWGC 1 cut(s) 884
Tsp45I GTSAC 5 cut(s) 95, 422, 464, 606, 661
TspDTI ATGAA 4 cut(s) 152, 304, 663, 946
TspRI CASTG 4 cut(s) 108, 270, 382, 408
Van91I CCANNNNNTGG 1 cut(s) 868
XapI RAATTY 1 cut(s) 754
XceI RCATGY 1 cut(s) 535
XspI CTAG 4 cut(s) 329, 338, 518, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.