FvH4_2g17381

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000203
Physical Location & Seq
Reverse (-)
15009255 .. 15009587
333 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17381.t1

Sequence Viewer

Length: 333 bp
ATGAAAACCAGAGAACATTTCCCCATTGGTGGTTTGCCAAAACATGATGTGTGGAGTTTGTTTAAGAAGGTGGCAGGAGGTTCCATTGAATCCGATCTCAAGGTGCGTCCAATAGCAGAACAAGTTCTTGCTGAATGTGATGGTTTACCAGTTGCAATTTCTACAGTTGGAGGGGCACTACAAGGTAAAAGCATTCCAAAATGGAGAAATGCACTTAGAGAACTAAGAAATGCTTGTCCTGAAAACGTGCCAGGAGTGATAAAGCATGTGTATGGAAAAATAGTGTTCAGCTACGAATGTCTACCAAGCGAGCAAGCCAAGTCATGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

111

Amino Acids

12.04

Weight (kDa)

8.98

Isoelectric Point (pI)

54.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 178
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 162
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 252
BseLI CCNNNNNNNGG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 29
BsmI GAATGC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 149
BssMI GATC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 166
BstC8I GCNNGC 2 cut(s) 311, 315
BstDEI CTNAG 2 cut(s) 215, 224
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 311, 315
CseI GACGC 1 cut(s) 95
CviAII CATG 3 cut(s) 44, 266, 324
CviJI RGCY 2 cut(s) 291, 317
CviKI_1 RGCY 2 cut(s) 291, 317
DdeI CTNAG 2 cut(s) 215, 224
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 250
FaeI CATG 3 cut(s) 47, 269, 327
FaiI YATR 4 cut(s) 45, 267, 273, 325
FalI AAGNNNNNCTT 2 cut(s) 217, 249
FatI CATG 3 cut(s) 43, 265, 323
FblI GTMKAC 1 cut(s) 301
HgaI GACGC 1 cut(s) 95
Hin1II CATG 3 cut(s) 47, 269, 327
HinfI GANTC 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 146, 302
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 146, 302
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 155, 212
HpyF3I CTNAG 2 cut(s) 215, 224
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 47, 269, 327
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 22, 60, 162, 237, 252, 264
MaeII ACGT 1 cut(s) 246
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 2 cut(s) 71, 164
MroXI GAANNNNTTC 1 cut(s) 123
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 252
NdeII GATC 1 cut(s) 94
NlaIII CATG 3 cut(s) 47, 269, 327
NlaIV GGNNCC 1 cut(s) 82
NspI RCATGY 1 cut(s) 269
PctI GAATGC 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 178
SetI ASST 6 cut(s) 72, 82, 105, 187, 249, 293
SfcI CTRYAG 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 1 cut(s) 249
TasI AATT 1 cut(s) 156
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 269
XmiI GTMKAC 1 cut(s) 301
XmnI GAANNNNTTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.