Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000203

Physical Location & Seq

Genomic Coordinates Forward (+)

11654604 .. 11658160

Gene Structure 3557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0141600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGACGACAAAGACCTAGACGACGCGGCTTTGTGGGCCGTGATCGACTCCGCCGCCGCCTCCCACTCCTCCAAATCCAAATTCCAATCCCGCCAACCCCTCGCTATCCAATACCAGCGGCCGTCTCCGCTGATCTCAAACCCTTCGCCGCCGCAGAAGCTCTTCAAGACCGCTCGGATCTCCTACTCCGGCGAATCCGACTCCAAATCGGAGGGCGAGGTCGTCGAGGAGCCTTGGGCTTTCCACCCGCCGAGGAAGATCGCCAGGTCAGCAAACGACGGCAATTCTCTCGCCGTAGTCAGAAATGTGCCGCGCACGCCTACCACGCCGGTGTACGCTTCGCCGGAGTCGCATTTGTCGCCGGGAATCGGGAGGTTTAGTAGTCCTGTTAGCTATCCGCAGAGAGAAGAGAGGGATAATAATCCTGTGCAGACGGTGCAGCATAGCTTGTCTGGGATGTTTCCTTCGGTTTCTTTGTTTAAGGAGTATCAAGATGCAGCTATGGCGATCTTGGAGAAAACTGATTACACTAAGATTCATGGGAGTACTTATATCAAAAAGTCAGGTTGGAGGAAGATATCGTTTTACTTCAATCTCTCTTTTGAGATCAAGGACAAGAGCATTGAGTTTGATGAGAGTCGAAATGTTCTGCGTGCAGAGTTTGTGGTTCGGGCACACATGCAGGGTGGTAGGTTCTCGGATGGATGGGGCTCATGTGATCGGCGTGAGAAGAGATTCAACAAACCAAATCATGATATTCCAAGTACAGCAGAGACCAGGGCGAAAAATAAAGCATCCTCGGACTTGCTAGGAATTGGAGATTACAGACCTGGTGCAAGTCAAGACCACCAATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009628 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0034059 GO:0036293 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0070482

KEGG Pathways

Metabolic & Signaling

ko00010 ko01100 ko01110 ko01130 map00010 map01100 map01110 map01130

Pfam Domains

Protein Families

TPP_enzyme_C TPP_enzyme_M TPP_enzyme_N

Protein Analysis

286

Amino Acids

32.04

Weight (kDa)

8.98

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000203)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica	Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis	pycom05g14750
rosa_chinensis	RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata	RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora	Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii	Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa	Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha	Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana	Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AccII	CGCG	2 cut(s)	26, 313
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	80
AfaI	GTAC	3 cut(s)	335, 547, 766
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	166, 592, 739
AjnI	CCWGG	3 cut(s)	263, 776, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	4 cut(s)	160, 393, 447, 500
AluI	AGCT	4 cut(s)	160, 393, 447, 500
Alw26I	GTCTC	2 cut(s)	129, 767
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	36, 119
ApeKI	GCWGC	2 cut(s)	439, 497
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	2 cut(s)	161, 734
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	676
BanII	GRGCYC	1 cut(s)	713
BbvI	GCAGC	2 cut(s)	451, 509
BccI	CCATC	2 cut(s)	695, 699
BceAI	ACGGC	4 cut(s)	23, 106, 278, 295
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	3 cut(s)	265, 778, 831
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	129, 767
BfaI	CTAG	2 cut(s)	17, 809
BisI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
BlsI	GCNGC	9 cut(s)	28, 55, 58, 120, 150, 153, 312, 441, 499
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	4 cut(s)	265, 363, 778, 831
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	4 cut(s)	265, 363, 778, 831
BmsI	GCATC	2 cut(s)	484, 803
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	767
BsaJI	CCNNGG	4 cut(s)	233, 251, 777, 798
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	3 cut(s)	265, 778, 831
BseDI	CCNNGG	4 cut(s)	233, 251, 777, 798
BseGI	GGATG	4 cut(s)	462, 706, 710, 794
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseRI	GAGGAG	2 cut(s)	58, 242
BseSI	GKGCMC	1 cut(s)	676
BseX3I	CGGCCG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	451, 509
BsgI	GTGCAG	3 cut(s)	449, 458, 675
Bsh1236I	CGCG	2 cut(s)	26, 313
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	38, 121
BsiEI	CGRYCG	1 cut(s)	122
BsiSI	CCGG	4 cut(s)	189, 329, 344, 362
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	129, 767
BsmBI	CGTCTC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	38, 121
Bso31I	GGTCTC	1 cut(s)	767
Bsp1286I	GDGCHC	2 cut(s)	676, 713
Bsp143I	GATC	7 cut(s)	42, 132, 177, 258, 507, 606, 718
BspANI	GGCC	2 cut(s)	38, 121
BspFNI	CGCG	2 cut(s)	26, 313
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	767
BsrBI	CCGCTC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	328
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	4 cut(s)	233, 251, 777, 798
BssMI	GATC	7 cut(s)	42, 132, 177, 258, 507, 606, 718
BssT1I	CCWWGG	1 cut(s)	233
Bst2UI	CCWGG	3 cut(s)	265, 778, 831
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	3 cut(s)	167, 402, 725
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	317, 654
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	4 cut(s)	462, 706, 710, 794
BstFNI	CGCG	2 cut(s)	26, 313
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	7 cut(s)	45, 135, 180, 261, 510, 609, 721
BstMAI	GTCTC	2 cut(s)	129, 767
BstMBI	GATC	7 cut(s)	42, 132, 177, 258, 507, 606, 718
BstMCI	CGRYCG	1 cut(s)	122
BstNI	CCWGG	3 cut(s)	265, 778, 831
BstNSI	RCATGY	1 cut(s)	682
BstSCI	CCNGG	4 cut(s)	263, 361, 776, 829
BstSLI	GKGCMC	1 cut(s)	676
BstUI	CGCG	2 cut(s)	26, 313
BstV1I	GCAGC	2 cut(s)	451, 509
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	38, 121
BtsCI	GGATG	4 cut(s)	462, 706, 710, 794
Cac8I	GCNNGC	2 cut(s)	317, 654
CciI	TCATGA	1 cut(s)	751
CfoI	GCGC	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	32
CsiI	ACCWGGT	1 cut(s)	829
Csp6I	GTAC	3 cut(s)	334, 546, 765
CviAII	CATG	5 cut(s)	539, 679, 714, 752, 858
CviQI	GTAC	3 cut(s)	334, 546, 765
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	7 cut(s)	44, 134, 179, 260, 509, 608, 720
DpnII	GATC	7 cut(s)	42, 132, 177, 258, 507, 606, 718
EaeI	YGGCCR	1 cut(s)	119
EagI	CGGCCG	1 cut(s)	119
Eam1104I	CTCTTC	3 cut(s)	167, 402, 725
EarI	CTCTTC	3 cut(s)	167, 402, 725
EciI	GGCGGA	1 cut(s)	40
EclXI	CGGCCG	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	233
Eco24I	GRGCYC	1 cut(s)	713
Eco31I	GGTCTC	1 cut(s)	767
Eco32I	GATATC	1 cut(s)	579
Eco52I	CGGCCG	1 cut(s)	119
EcoRII	CCWGG	3 cut(s)	263, 776, 829
EcoRV	GATATC	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	233
EcoT22I	ATGCAT	1 cut(s)	859
EcoT38I	GRGCYC	1 cut(s)	713
ErhI	CCWWGG	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	5 cut(s)	542, 682, 717, 755, 861
FaiI	YATR	9 cut(s)	444, 503, 540, 552, 680, 715, 753, 855, 859
FatI	CATG	5 cut(s)	538, 678, 713, 751, 857
FauI	CCCGC	2 cut(s)	98, 255
Fnu4HI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
FokI	GGATG	4 cut(s)	469, 713, 717, 781
FriOI	GRGCYC	1 cut(s)	713
Fsp4HI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
FspBI	CTAG	2 cut(s)	17, 809
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
HaeIII	GGCC	2 cut(s)	38, 121
HapII	CCGG	4 cut(s)	189, 329, 344, 362
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	5 cut(s)	542, 682, 717, 755, 861
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	8 cut(s)	47, 194, 200, 347, 366, 535, 637, 735
HpaII	CCGG	4 cut(s)	189, 329, 344, 362
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	6 cut(s)	177, 199, 211, 302, 700, 802
Hpy188III	TCNNGA	5 cut(s)	166, 370, 491, 752, 842
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	3 cut(s)	26, 227, 281
HpyAV	CCTTC	2 cut(s)	153, 474
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	7 cut(s)	430, 439, 497, 656, 682, 836, 857
HpyF3I	CTNAG	1 cut(s)	531
Hsp92II	CATG	5 cut(s)	542, 682, 717, 755, 861
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	7 cut(s)	42, 132, 177, 258, 507, 606, 718
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	451, 509
LweI	GCATC	2 cut(s)	484, 803
MabI	ACCWGGT	1 cut(s)	829
MaeI	CTAG	2 cut(s)	17, 809
MalI	GATC	7 cut(s)	44, 134, 179, 260, 509, 608, 720
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	7 cut(s)	42, 132, 177, 258, 507, 606, 718
MboII	GAAGA	5 cut(s)	154, 268, 419, 586, 742
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	2 cut(s)	676, 713
MluCI	AATT	3 cut(s)	80, 283, 813
MlyI	GAGTC	4 cut(s)	41, 194, 356, 646
MmeI	TCCRAC	2 cut(s)	222, 548
Mph1103I	ATGCAT	1 cut(s)	859
MroXI	GAANNNNTTC	2 cut(s)	161, 734
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	329, 852
MspA1I	CMGCKG	2 cut(s)	118, 130
MspI	CCGG	4 cut(s)	189, 329, 344, 362
MspR9I	CCNGG	4 cut(s)	265, 363, 778, 831
MvaI	CCWGG	3 cut(s)	265, 778, 831
MvnI	CGCG	2 cut(s)	26, 313
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	7 cut(s)	42, 132, 177, 258, 507, 606, 718
NlaIII	CATG	5 cut(s)	542, 682, 717, 755, 861
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	1 cut(s)	276
NsiI	ATGCAT	1 cut(s)	859
NspI	RCATGY	1 cut(s)	682
OliI	CACNNNNGTG	1 cut(s)	329
PagI	TCATGA	1 cut(s)	751
PciSI	GCTCTTC	1 cut(s)	167
PdmI	GAANNNNTTC	2 cut(s)	161, 734
PfeI	GAWTC	4 cut(s)	194, 366, 535, 735
PkrI	GCNGC	9 cut(s)	28, 55, 58, 120, 150, 153, 312, 441, 499
PleI	GAGTC	4 cut(s)	41, 194, 355, 645
PpsI	GAGTC	4 cut(s)	41, 194, 355, 645
Psp6I	CCWGG	3 cut(s)	263, 776, 829
PspGI	CCWGG	3 cut(s)	263, 776, 829
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	3 cut(s)	335, 547, 766
RsaNI	GTAC	3 cut(s)	334, 546, 765
RseI	CAYNNNNRTG	2 cut(s)	329, 852
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	9 cut(s)	27, 54, 57, 119, 149, 152, 311, 440, 498
Sau3AI	GATC	7 cut(s)	42, 132, 177, 258, 507, 606, 718
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	4 cut(s)	41, 194, 356, 646
ScrFI	CCNGG	4 cut(s)	265, 363, 778, 831
SduI	GDGCHC	2 cut(s)	676, 713
SexAI	ACCWGGT	1 cut(s)	829
SfaNI	GCATC	2 cut(s)	484, 803
SgrAI	CRCCGGYG	1 cut(s)	328
SmiMI	CAYNNNNRTG	2 cut(s)	329, 852
Sse9I	AATT	3 cut(s)	80, 283, 813
SspMI	CTAG	2 cut(s)	17, 809
StyD4I	CCNGG	4 cut(s)	263, 361, 776, 829
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	3 cut(s)	45, 225, 640
TasI	AATT	3 cut(s)	80, 283, 813
TatI	WGTACW	2 cut(s)	545, 764
TauI	GCSGC	7 cut(s)	29, 56, 59, 121, 151, 154, 313
TfiI	GAWTC	4 cut(s)	194, 366, 535, 735
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseI	GCWGC	2 cut(s)	439, 497
TspDTI	ATGAA	1 cut(s)	527
XapI	RAATTY	1 cut(s)	80
XceI	RCATGY	1 cut(s)	682
XmnI	GAANNNNTTC	2 cut(s)	161, 734
XspI	CTAG	2 cut(s)	17, 809
ZrmI	AGTACT	1 cut(s)	547
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.