Rh7CG055900

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000203
Physical Location & Seq
Reverse (-)
4105811 .. 4106446
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG055900.1

Sequence Viewer

Length: 636 bp
ATGCAAGAGATTATTGTAGCATTTGTTGAACCATTGGCAGAATGGACGGTGAGACCTATTTGTCGACAGTTGAGTTATGTGTTTCACTACAACAGCAACATTGAGCATCTCACCAGAAAGGTTCAGGTACTCCGTGACAAAAGAGAGAGAGTAAACCTGGAGATGAAACCTGCGAGAGAAGCTTCACAGATTATTGGTCCCGGAGTTGATCACTGGCTCGGTGATGTAGAAAAGATCATAGTAAAACAGGAGAAGAGTTTCAGTGAAGTAACTGTAGCAGCAAAGGAGGCGTGTTGTAATGGGTGGCTTCCAAATTTGAAGTGTCGTCATTCTTTGGGAAGGAAAGCTAAGAAGATGACTGATGAGGTGGATAAACTACTTGCTAATGAACCCAGGACTATAGCGCATCCTGCTTTTCATCCAGAGGTGGAATTCCAACCCACAGAGGACTTATTGCATGAAGGTGGCAGCTCCTCAGATACATCAAACCAAGAACAGGCACCTGCATATGAAGGAAAAAATATTAATTTTGATTCAAGAAGATCAACCATTAGAGATGTGATGGAAGCTCTCAAGGGAATCAATTCAATCCGATTATCATATGCGGCATGGGCGGCATTGGGAAGACAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

211

Amino Acids

24.0

Weight (kDa)

7.09

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 511
AasI GACNNNNNNGTC 1 cut(s) 60
Acc36I ACCTGC 2 cut(s) 178, 511
AccB1I GGYRCC 1 cut(s) 499
AccI GTMKAC 1 cut(s) 64
AciI CCGC 2 cut(s) 605, 614
AcsI RAATTY 2 cut(s) 313, 431
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 496
AgsI TTSAA 4 cut(s) 29, 319, 537, 588
AjnI CCWGG 2 cut(s) 156, 392
AluBI AGCT 4 cut(s) 182, 347, 471, 569
AluI AGCT 4 cut(s) 182, 347, 471, 569
Alw26I GTCTC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 278, 468
ApoI RAATTY 2 cut(s) 313, 431
AseI ATTAAT 1 cut(s) 525
Asp700I GAANNNNTTC 2 cut(s) 257, 583
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 3 cut(s) 61, 103, 233
AvaII GGWCC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 631
BbvI GCAGC 2 cut(s) 290, 480
BccI CCATC 1 cut(s) 556
BciT130I CCWGG 2 cut(s) 158, 394
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 46
BfmI CTRYAG 2 cut(s) 273, 399
BfuAI ACCTGC 2 cut(s) 178, 511
BisI GCNGC 4 cut(s) 279, 469, 606, 615
BlsI GCNGC 4 cut(s) 280, 470, 607, 616
Bme1390I CCNGG 3 cut(s) 158, 201, 394
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 199, 501
BmrFI CCNGG 3 cut(s) 158, 201, 394
BmsI GCATC 2 cut(s) 115, 415
BpiI GAAGAC 1 cut(s) 631
BpmI CTGGAG 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 557
BpuMI CCSGG 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 392
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 218
BseBI CCWGG 2 cut(s) 158, 394
BseDI CCNNGG 1 cut(s) 392
BseGI GGATG 2 cut(s) 406, 418
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 463
BseXI GCAGC 2 cut(s) 290, 480
BshNI GGYRCC 1 cut(s) 499
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 46
Bsp143I GATC 3 cut(s) 208, 234, 542
BspACI CCGC 2 cut(s) 605, 614
BspCNI CTCAG 1 cut(s) 488
BspLI GGNNCC 2 cut(s) 199, 501
BspMI ACCTGC 2 cut(s) 178, 511
BspT107I GGYRCC 1 cut(s) 499
BspTNI GGTCTC 1 cut(s) 46
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 3 cut(s) 208, 234, 542
Bst2UI CCWGG 2 cut(s) 158, 394
Bst4CI ACNGT 3 cut(s) 49, 69, 274
Bst6I CTCTTC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 348, 475
BstF5I GGATG 2 cut(s) 406, 418
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 3 cut(s) 211, 237, 545
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 3 cut(s) 208, 234, 542
BstMWI GCNNNNNNNGC 5 cut(s) 179, 287, 410, 611, 614
BstNI CCWGG 2 cut(s) 158, 394
BstSCI CCNGG 3 cut(s) 156, 199, 392
BstSFI CTRYAG 2 cut(s) 273, 399
BstV1I GCAGC 2 cut(s) 290, 480
BstV2I GAAGAC 1 cut(s) 631
BtsCI GGATG 2 cut(s) 406, 418
BtsIMutI CAGTG 2 cut(s) 211, 268
BveI ACCTGC 2 cut(s) 178, 511
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 128
CviAII CATG 2 cut(s) 458, 609
CviJI RGCY 6 cut(s) 182, 217, 307, 347, 471, 569
CviKI_1 RGCY 6 cut(s) 182, 217, 307, 347, 471, 569
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 2 cut(s) 348, 475
DpnI GATC 3 cut(s) 210, 236, 544
DpnII GATC 3 cut(s) 208, 234, 542
DrdI GACNNNNNNGTC 1 cut(s) 60
DseDI GACNNNNNNGTC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 156, 392
FaeI CATG 2 cut(s) 461, 612
FaiI YATR 9 cut(s) 78, 239, 401, 459, 508, 510, 601, 603, 610
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 457, 608
FauNDI CATATG 2 cut(s) 508, 601
FbaI TGATCA 1 cut(s) 208
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 4 cut(s) 279, 469, 606, 615
FokI GGATG 2 cut(s) 393, 405
Fsp4HI GCNGC 4 cut(s) 279, 469, 606, 615
GlaI GCGC 1 cut(s) 405
GluI GCNGC 4 cut(s) 279, 469, 606, 615
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 1 cut(s) 201
HhaI GCGC 1 cut(s) 406
Hin1II CATG 2 cut(s) 461, 612
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 180
HinfI GANTC 2 cut(s) 533, 579
HpaII CCGG 1 cut(s) 201
HphI GGTGA 3 cut(s) 61, 103, 233
Hpy166II GTNNAC 2 cut(s) 65, 154
Hpy188I TCNGA 2 cut(s) 478, 593
Hpy188III TCNNGA 2 cut(s) 422, 537
Hpy8I GTNNAC 2 cut(s) 65, 154
HpyAV CCTTC 3 cut(s) 333, 455, 506
HpyCH4III ACNGT 3 cut(s) 49, 69, 274
HpyCH4V TGCA 3 cut(s) 4, 457, 506
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 287, 410, 611, 614
HpyF3I CTNAG 2 cut(s) 348, 475
Hsp92II CATG 2 cut(s) 461, 612
HspAI GCGC 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 3 cut(s) 208, 234, 542
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 2 cut(s) 290, 480
LweI GCATC 2 cut(s) 115, 415
MaeIII GTNAC 2 cut(s) 134, 268
MalI GATC 3 cut(s) 210, 236, 544
MboI GATC 3 cut(s) 208, 234, 542
MboII GAAGA 4 cut(s) 265, 364, 552, 636
MluCI AATT 4 cut(s) 313, 431, 526, 583
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 5 cut(s) 280, 358, 418, 439, 484
MroXI GAANNNNTTC 2 cut(s) 257, 583
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 462
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 3 cut(s) 158, 201, 394
MvaI CCWGG 2 cut(s) 158, 394
MwoI GCNNNNNNNGC 5 cut(s) 179, 287, 410, 611, 614
NciI CCSGG 1 cut(s) 201
NdeI CATATG 2 cut(s) 508, 601
NdeII GATC 3 cut(s) 208, 234, 542
NlaIII CATG 2 cut(s) 461, 612
NlaIV GGNNCC 2 cut(s) 199, 501
NmuCI GTSAC 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 511
PdmI GAANNNNTTC 2 cut(s) 257, 583
PfeI GAWTC 2 cut(s) 533, 579
PfoI TCCNGGA 1 cut(s) 199
PkrI GCNGC 4 cut(s) 280, 470, 607, 616
PshBI ATTAAT 1 cut(s) 525
Psp6I CCWGG 2 cut(s) 156, 392
PspGI CCWGG 2 cut(s) 156, 392
PspN4I GGNNCC 2 cut(s) 199, 501
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 462
SalI GTCGAC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 4 cut(s) 279, 469, 606, 615
Sau3AI GATC 3 cut(s) 208, 234, 542
Sau96I GGNCC 1 cut(s) 197
ScrFI CCNGG 3 cut(s) 158, 201, 394
SfaNI GCATC 2 cut(s) 115, 415
SfcI CTRYAG 2 cut(s) 273, 399
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 4 cut(s) 313, 431, 526, 583
SsiI CCGC 2 cut(s) 605, 614
SspI AATATT 1 cut(s) 523
StyD4I CCNGG 3 cut(s) 156, 199, 392
TaaI ACNGT 3 cut(s) 49, 69, 274
TaqI TCGA 1 cut(s) 64
TasI AATT 4 cut(s) 313, 431, 526, 583
TauI GCSGC 2 cut(s) 608, 617
TfiI GAWTC 2 cut(s) 533, 579
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 2 cut(s) 218, 268
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 278, 468
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 5 cut(s) 179, 402, 407, 474, 525
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 2 cut(s) 218, 268
VpaK11BI GGWCC 1 cut(s) 197
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 2 cut(s) 313, 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 64
XmnI GAANNNNTTC 2 cut(s) 257, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.