FvH4_1g02750

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000203
Physical Location & Seq
Forward (+)
1575493 .. 1576638
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02750.t1

Sequence Viewer

Length: 1146 bp
ATGTATGATAGCTTTCAACATTGGGTGGTTGACAAACTGGGCTCAGCAGAAACAACCAATTGGATCTCTCAATTGGGGGATGCGGAAGAAGTCGACATGTGGAAGAGACTCAACAGATTGGCCGTTGCCTCAATAACGTCTGATCAGGTGTCTCAACTGGAGGATGAGAAAAGCAGCGAACCAGAGGAAGACGACGACCTTGGAGATCTGTATGCAGAGTATGTTAAAGAATTGGAAAACTACGACCACCTCACAAGGTGGGCCGACTCTAAGGACTGGGGAGTTGGGTTACTTTCGGAGTTACTCTCCTTGTCATATTTGACTACTTTAGAAGTGGTTTTACCACCAATTGACATTCTGCGAACCAGTAAGCTGTTTCATAAGCTTGAAAGATTTAAGATCAGCATTGGATGGGGGGATCATGAAAACTTGGATTACTTGGAGGGTAAGGGTAACTACTTGAGAGTTCATGATCTTAATGCAAGCTCCCTTGCGGCTACTGGAATCAGTTTGTTGTTCAAGAAAACTGAGACTCTCGAGTTAAAAATGAAGAATTTGAGAGATCCTCTCAATGTGCTGGATGTAAACTGTTGTGCAAACTTGGAGTCACTTCAACTGGAAGACTGTGATTCTCTAGAATATCTGATTGACATGACACTTGTGGAACATACTCGACGAAGCGTCTTCCCTGTCTTGAAGGACCTGAGAATCACCGGAGCAAAAATGCTGAAAGAGATTTTTCATGGTGACCTGCCGCCGGGGTCGCTTCCGAAACTAGAAGTTGTATTTTTAATGGATCTACCTGCATTGACGACTGTTTGGACTCTTGAATCTGGTTATGTGGGAGATTTGGCAGTTCTGCGTTCAATGAACATAAAGAGTTGCAAGTCACTGGAAGCAATTTTTGGCTTGGAAGGATCGGAGCATCATGTTGAAGAGATCAAGTTTCTTAGTTTGAAAGATTTGAACCTTGAATATCTACCAAGCTTCATCGGAATCAGCAAAAGTACTTGTAAAGGACCGGAAAGGGAACCAGAAGTCAGCAGTCTCTACTCAACTAGTTCGACCGTTGAATATTCACATTTCTCTGACCCCAAGGTGTTTCTTTTCGGAAATATTTTTCCTTTTAATTTGCCACATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

382

Amino Acids

43.19

Weight (kDa)

4.74

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 179 - 302 2.6e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 759, 811
AccI GTMKAC 1 cut(s) 93
AciI CCGC 3 cut(s) 83, 494, 755
AclWI GGATC 5 cut(s) 71, 426, 557, 804, 925
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 1 cut(s) 553
AdeI CACNNNGTG 1 cut(s) 258
AfaI GTAC 1 cut(s) 1009
AfiI CCNNNNNNNGG 1 cut(s) 757
AflIII ACRYGT 1 cut(s) 96
AhdI GACNNNNNGTC 1 cut(s) 680
AhlI ACTAGT 1 cut(s) 1058
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AluBI AGCT 5 cut(s) 12, 373, 385, 486, 987
AluI AGCT 5 cut(s) 12, 373, 385, 486, 987
Alw26I GTCTC 4 cut(s) 100, 156, 524, 1052
AlwI GGATC 5 cut(s) 71, 426, 557, 804, 925
Ama87I CYCGRG 1 cut(s) 536
AoxI GGCC 2 cut(s) 120, 261
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 553
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AspS9I GGNCC 3 cut(s) 261, 700, 1019
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 2 cut(s) 703, 758
AvaI CYCGRG 1 cut(s) 536
AvaII GGWCC 2 cut(s) 700, 1019
BanII GRGCYC 1 cut(s) 44
BarI GAAGNNNNNNTAC 2 cut(s) 324, 356
BbsI GAAGAC 3 cut(s) 195, 627, 676
BbvI GCAGC 1 cut(s) 186
BccI CCATC 1 cut(s) 405
BceAI ACGGC 1 cut(s) 107
BclI TGATCA 1 cut(s) 142
BcnI CCSGG 1 cut(s) 759
BcoDI GTCTC 4 cut(s) 100, 156, 524, 1052
BcuI ACTAGT 1 cut(s) 1058
BfaI CTAG 3 cut(s) 635, 776, 1059
BfuAI ACCTGC 2 cut(s) 759, 811
BglII AGATCT 1 cut(s) 205
BisI GCNGC 3 cut(s) 175, 495, 755
BlpI GCTNAGC 1 cut(s) 43
BlsI GCNGC 3 cut(s) 176, 496, 756
BmcAI AGTACT 1 cut(s) 1009
Bme1390I CCNGG 1 cut(s) 759
Bme18I GGWCC 2 cut(s) 700, 1019
BmeRI GACNNNNNGTC 1 cut(s) 680
BmeT110I CYCGRG 1 cut(s) 536
BmgT120I GGNCC 3 cut(s) 261, 700, 1019
BmiI GGNNCC 1 cut(s) 1032
BmrFI CCNGG 1 cut(s) 759
BmrI ACTGGG 2 cut(s) 47, 286
BmsI GCATC 2 cut(s) 70, 934
BmuI ACTGGG 2 cut(s) 47, 286
BpiI GAAGAC 3 cut(s) 195, 627, 676
BplI GAGNNNNNCTC 6 cut(s) 290, 322, 550, 582, 552, 584
BpmI CTGGAG 1 cut(s) 179
Bpu1102I GCTNAGC 1 cut(s) 43
BpuEI CTTGAG 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 759
BsaJI CCNNGG 3 cut(s) 199, 758, 1095
BsaWI WCCGGW 2 cut(s) 713, 1021
Bsc4I CCNNNNNNNGG 1 cut(s) 757
Bse1I ACTGG 7 cut(s) 42, 162, 281, 366, 505, 621, 897
BseDI CCNNGG 3 cut(s) 199, 758, 1095
BseGI GGATG 4 cut(s) 85, 169, 416, 586
BseLI CCNNNNNNNGG 1 cut(s) 757
BseMII CTCAG 3 cut(s) 57, 519, 695
BseNI ACTGG 7 cut(s) 42, 162, 281, 366, 505, 621, 897
BseXI GCAGC 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 1068
BshFI GGCC 2 cut(s) 122, 263
BsiEI CGRYCG 1 cut(s) 1068
BsiHKCI CYCGRG 1 cut(s) 536
BsiSI CCGG 3 cut(s) 714, 758, 1022
BslI CCNNNNNNNGG 1 cut(s) 757
BsmAI GTCTC 4 cut(s) 100, 156, 524, 1052
BsnI GGCC 2 cut(s) 122, 263
BsoBI CYCGRG 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 44
Bsp1720I GCTNAGC 1 cut(s) 43
BspACI CCGC 3 cut(s) 83, 494, 755
BspANI GGCC 2 cut(s) 122, 263
BspCNI CTCAG 3 cut(s) 56, 520, 696
BspHI TCATGA 2 cut(s) 421, 469
BspLI GGNNCC 1 cut(s) 1032
BspMI ACCTGC 2 cut(s) 759, 811
BspPI GGATC 5 cut(s) 71, 426, 557, 804, 925
BsrI ACTGG 7 cut(s) 42, 162, 281, 366, 505, 621, 897
BssECI CCNNGG 3 cut(s) 199, 758, 1095
BssT1I CCWWGG 2 cut(s) 199, 1095
Bst4CI ACNGT 4 cut(s) 590, 626, 817, 1069
Bst6I CTCTTC 2 cut(s) 98, 930
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 5 cut(s) 43, 270, 528, 704, 950
BstEII GGTNACC 1 cut(s) 746
BstF5I GGATG 4 cut(s) 85, 169, 416, 586
BstMAI GTCTC 4 cut(s) 100, 156, 524, 1052
BstMCI CGRYCG 1 cut(s) 1068
BstMWI GCNNNNNNNGC 1 cut(s) 763
BstNSI RCATGY 1 cut(s) 100
BstPI GGTNACC 1 cut(s) 746
BstSCI CCNGG 1 cut(s) 757
BstV1I GCAGC 1 cut(s) 186
BstV2I GAAGAC 3 cut(s) 195, 627, 676
BstX2I RGATCY 4 cut(s) 63, 205, 562, 796
BstYI RGATCY 4 cut(s) 63, 205, 562, 796
BsuRI GGCC 2 cut(s) 122, 263
BtsCI GGATG 4 cut(s) 85, 169, 416, 586
BtsIMutI CAGTG 1 cut(s) 890
BveI ACCTGC 2 cut(s) 759, 811
Cac8I GCNNGC 1 cut(s) 484
CciI TCATGA 2 cut(s) 421, 469
Cfr13I GGNCC 3 cut(s) 261, 700, 1019
CseI GACGC 1 cut(s) 670
Csp6I GTAC 1 cut(s) 1008
CviAII CATG 6 cut(s) 97, 422, 470, 652, 743, 929
CviQI GTAC 1 cut(s) 1008
DdeI CTNAG 5 cut(s) 43, 270, 528, 704, 950
DraIII CACNNNGTG 1 cut(s) 258
DriI GACNNNNNGTC 1 cut(s) 680
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 98, 930
Eam1105I GACNNNNNGTC 1 cut(s) 680
EarI CTCTTC 2 cut(s) 98, 930
Eco130I CCWWGG 2 cut(s) 199, 1095
Eco24I GRGCYC 1 cut(s) 44
Eco47I GGWCC 2 cut(s) 700, 1019
Eco88I CYCGRG 1 cut(s) 536
Eco91I GGTNACC 1 cut(s) 746
EcoO109I RGGNCCY 1 cut(s) 700
EcoO65I GGTNACC 1 cut(s) 746
EcoT14I CCWWGG 2 cut(s) 199, 1095
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 2 cut(s) 199, 1095
FaeI CATG 6 cut(s) 100, 425, 473, 655, 746, 932
FatI CATG 6 cut(s) 96, 421, 469, 651, 742, 928
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 175, 495, 755
FokI GGATG 4 cut(s) 92, 176, 423, 593
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 3 cut(s) 175, 495, 755
FspBI CTAG 3 cut(s) 635, 776, 1059
GluI GCNGC 3 cut(s) 175, 495, 755
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 2 cut(s) 122, 263
HapII CCGG 3 cut(s) 714, 758, 1022
HgaI GACGC 1 cut(s) 670
Hin1II CATG 6 cut(s) 100, 425, 473, 655, 746, 932
HincII GTYRAC 2 cut(s) 31, 94
HindII GTYRAC 2 cut(s) 31, 94
HindIII AAGCTT 2 cut(s) 383, 985
HpaII CCGG 3 cut(s) 714, 758, 1022
HphI GGTGA 2 cut(s) 703, 758
Hpy166II GTNNAC 3 cut(s) 31, 94, 586
Hpy188I TCNGA 8 cut(s) 142, 298, 645, 771, 922, 995, 1090, 1112
Hpy188III TCNNGA 7 cut(s) 422, 470, 520, 536, 635, 694, 827
Hpy8I GTNNAC 3 cut(s) 31, 94, 586
Hpy99I CGWCG 2 cut(s) 197, 678
HpyAV CCTTC 2 cut(s) 691, 908
HpyCH4III ACNGT 4 cut(s) 590, 626, 817, 1069
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 5 cut(s) 215, 482, 596, 806, 885
HpyF10VI GCNNNNNNNGC 1 cut(s) 763
HpyF3I CTNAG 5 cut(s) 43, 270, 528, 704, 950
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 6 cut(s) 100, 425, 473, 655, 746, 932
Ksp22I TGATCA 1 cut(s) 142
LmnI GCTCC 3 cut(s) 491, 716, 922
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 2 cut(s) 70, 934
MaeI CTAG 3 cut(s) 635, 776, 1059
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 6 cut(s) 288, 300, 452, 606, 746, 888
MboII GAAGA 7 cut(s) 98, 115, 200, 562, 632, 676, 947
MfeI CAATTG 3 cut(s) 58, 71, 348
MflI RGATCY 4 cut(s) 63, 205, 562, 796
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 7 cut(s) 58, 71, 230, 348, 553, 900, 1129
MlyI GAGTC 5 cut(s) 102, 260, 526, 614, 817
MnlI CCTC 6 cut(s) 139, 154, 178, 260, 436, 576
MseI TTAA 6 cut(s) 225, 396, 477, 542, 791, 1128
MspI CCGG 3 cut(s) 714, 758, 1022
MspR9I CCNGG 1 cut(s) 759
MunI CAATTG 3 cut(s) 58, 71, 348
MwoI GCNNNNNNNGC 1 cut(s) 763
NciI CCSGG 1 cut(s) 759
NlaIII CATG 6 cut(s) 100, 425, 473, 655, 746, 932
NlaIV GGNNCC 1 cut(s) 1032
NmuCI GTSAC 3 cut(s) 606, 746, 888
NspI RCATGY 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 536
PagI TCATGA 2 cut(s) 421, 469
PciI ACATGT 1 cut(s) 96
PfeI GAWTC 5 cut(s) 504, 629, 708, 830, 996
PkrI GCNGC 3 cut(s) 176, 496, 756
PleI GAGTC 5 cut(s) 102, 260, 526, 613, 817
PpsI GAGTC 5 cut(s) 102, 260, 526, 613, 817
PpuMI RGGWCCY 1 cut(s) 700
PscI ACATGT 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 700
PspEI GGTNACC 1 cut(s) 746
PspN4I GGNNCC 1 cut(s) 1032
PspPI GGNCC 3 cut(s) 261, 700, 1019
PspPPI RGGWCCY 1 cut(s) 700
PsuI RGATCY 4 cut(s) 63, 205, 562, 796
RsaI GTAC 1 cut(s) 1009
RsaNI GTAC 1 cut(s) 1008
SalI GTCGAC 1 cut(s) 92
SaqAI TTAA 6 cut(s) 225, 396, 477, 542, 791, 1128
SatI GCNGC 3 cut(s) 175, 495, 755
Sau96I GGNCC 3 cut(s) 261, 700, 1019
ScaI AGTACT 1 cut(s) 1009
SchI GAGTC 5 cut(s) 102, 260, 526, 614, 817
ScrFI CCNGG 1 cut(s) 759
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 2 cut(s) 70, 934
Sfr274I CTCGAG 1 cut(s) 536
SinI GGWCC 2 cut(s) 700, 1019
SlaI CTCGAG 1 cut(s) 536
SmlI CTYRAG 2 cut(s) 460, 536
SmoI CTYRAG 2 cut(s) 460, 536
SpeI ACTAGT 1 cut(s) 1058
Sse9I AATT 7 cut(s) 58, 71, 230, 348, 553, 900, 1129
SsiI CCGC 3 cut(s) 83, 494, 755
SspI AATATT 2 cut(s) 1076, 1117
SspMI CTAG 3 cut(s) 635, 776, 1059
StyD4I CCNGG 1 cut(s) 757
StyI CCWWGG 2 cut(s) 199, 1095
TaaI ACNGT 4 cut(s) 590, 626, 817, 1069
TaiI ACGT 1 cut(s) 140
TaqI TCGA 4 cut(s) 93, 537, 673, 1064
TasI AATT 7 cut(s) 58, 71, 230, 348, 553, 900, 1129
TatI WGTACW 1 cut(s) 1007
TauI GCSGC 2 cut(s) 497, 757
TfiI GAWTC 5 cut(s) 504, 629, 708, 830, 996
Tru1I TTAA 6 cut(s) 225, 396, 477, 542, 791, 1128
Tru9I TTAA 6 cut(s) 225, 396, 477, 542, 791, 1128
TscAI CASTG 1 cut(s) 897
TseFI GTSAC 3 cut(s) 606, 746, 888
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 3 cut(s) 606, 746, 888
TspDTI ATGAA 7 cut(s) 368, 438, 458, 563, 731, 884, 979
TspRI CASTG 1 cut(s) 897
VpaK11BI GGWCC 2 cut(s) 700, 1019
XapI RAATTY 1 cut(s) 553
XbaI TCTAGA 1 cut(s) 634
XceI RCATGY 1 cut(s) 100
XhoI CTCGAG 1 cut(s) 536
XmiI GTMKAC 1 cut(s) 93
XspI CTAG 3 cut(s) 635, 776, 1059
ZrmI AGTACT 1 cut(s) 1009
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.