Rh6DG244700

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000203
Physical Location & Seq
Forward (+)
43146443 .. 43163693
17251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG244700.1

Sequence Viewer

Length: 3018 bp
ATGGAAGCTATCGTTTCATCAGTTCTTGGAAAACTAGCAGAGTACACAGTTGAACCGGTTCTGCGACAGTTTGGTTATCTGATTCACTATGAGAGTAACGTTGCTCGTCTCAATAACCAAGTTGAGAGGCTGAATGCCCAAAGACGCGACGTGGCAGAAAAAATTGAAGCAGCGACCAGGAATTCAGAGACTATTCTTCACCAAGTTGAGATCTGGTTGGACCAGGTGGATCGAACCTTACGAGACAAGGATACATGTTTTGAAAACGAGCGAACAGCAAAGGCGGAATGCTGCTCAAATGGCTGGTTCCCCAATTTGAAGATACGGCATTCCTTGAGTAGGAAAGCGAAGAAGATGACTCCGGATGTCGATAGCCTCATTGATAACAAGTTTGAGGTTGTAGGCTTCGCTGCCAGACATGAAGGGGCCAGCTCCTCCCAGGCATCCAACATTATGAATTTTGAATCAAGAAAATCAATCATTGAAGGTGTGATGGAAGCTCTGAAAGGGAATCAAGTCAATCTGATTGTCATATGCGGCATGGGCGGAATTGGCAAGACAACAATGGTGAAAGAAGTTGTTATCAGAGCAAAGAAGGAGGGTCTAGTTGATGAGCATGCAAAGGTAGTTGTTAATGACAAACCTGATATAAGTAAGATTCAATCTGATATTGCAGAATTGCTGGGCCTGAAACTTGAAGAACAGGTTTTAGAATCAAGAGCAGATAAGTTATTTAATAGATTATCTGCTAAGAGAGTTCTTGTAGTATTAGATAATGTTTGGGAAACGCTGGATTTGCGGGAAATAGGGATTCCCAGTGGTCTAAACAGTTGTAAAATCTTGGTAACATCACGAAACCAAGATATCTTCAATGATATGGAAGAAGCTAGAAAGAAATTCCCCATTGACGTTTTGCCCGAAAGTGATGCATGGAGTCTGTTTAAGAAGATGGCTGGAGATGATATTGAATCTGATCCCGAGCTGCGTTCGATAGCAGAACAGGTACTCGAGAAATGTGATGGATTACCAGTTGCAATTTCGACTTTGGGAAGCGCACTACGGGGGAAACCGAGAGCGAGCTGGAATTATGCACTCGGACTGTTACAAAATCCTTTTGAGGGAGACATTCAACCTTTTGAGGGAGAGATTCAAGGAATGAAGAAGAACGTGTATCATCCAATTAGGTTGAGTTACGACTTTCTGGAAAGTGAGCGGGTCAAATCCTTGTTTCTGCTGTGTTGTATATTTCGAGAAAGCACTGATATACCTGTTGAAGATTTGGTGACGCATGCGTTTGGGCTTCGGGTCTTTCAAAGAATTGATAAAGTTGAAAAAGCAAGGGATGGTGTAGAAGCCTTGGTTTACACACTCAAAAGTTGCTATTTATTGTTGGACAGTGGCAAAGAAGAGTGTGTAAGAATGCATGACGTGGTGCGTGCCGTAGGCTTACGGATAGCCTCTGATGAGAGTGAAGGCACATTTCTTGTAAGACACGGAGTGCCACTGGAGAATTGGTCCCGGGGATACATTTGTACTTCACTAACAGCCAATAAAAGTACTCATGAGCTTTTGTTGTTGTCACGCACAAATGATGAAGAGAGGTCCAATGTGGGCACACTAGGCACATTGAATGGAGTGGAAGATCTTAAAGTCTTAGACATCTCAGTTCCTTATAAGGGTCTTTATACATGGATAACGTTTGCTATTATGTCTAGAACAAGATTGGAATCACTTCCGATACTTATGAGAAACATTCAAACACTGTGTCTAAGGGGTTTAGAACTCAGATTGGAAACAATTTCTATGATTGGGGACCTACGGACACTCACGATACTCCGCCTAGGTGGATCTTCCATACAGTATGTACCTGAGGAATTTAAAAACTTGTGCAATCTAAAGTTGCTAGATTTGGCGGATTGTTCGGAACTTCAAGAAATCTCATCAGGTGTCATATCAAGTTTAACCAAACTAGAAGAATTGTACTTGTGGGGTAGCTTCGAGGACTGGAATGATGTGCGGATTATTCAACTTTCATCGGAGCTACTGCAGTTGTCTTTGTTGACGAGTTTAGAAACCACTCTGTCTGTTGATATTCTGCAAAACAGCAGGCATCTATTTGCTAAGCTTAAAAGATTTAGGCTCTGTATACTAAAAAATAAAAGACGTGTACCCAAGTTTCTCCGCAGTATACCACTTTACAAATTGCCTGCAAATCCTCGTGACAACCTCTTGAGACTTGAAGATCTTGGCGCAGACTGCTCTCTTCTGGAAGTCTCTGTGTTGCTAAAGACAACTCATTTTCTACACCTAGGAAATGAAACTTTGGCCCACCCTTTCAATGTAGTAGATGCAGAGTGCGGTGGAAACTTGAAGGGTCTTACGGTCACACACTGTGATGCTCTGGAATATCTCGTTGACTTGACACGTGCTGAAACTACTCCTGTAGTTTTTCCTGTCTTGGCTTCACTGAAGATCTATGGTGCACAGAGGTTGCAGGAGATTTTTCATGGATTACTGCCAGTGGGGTCGCTTAAATCACTACGACGTTTAATCATACACCGGGCGGATGCATTAAGGCATGTTTGGAAGACAGAAAGCCAGTTTGACCGCCTGGAAAGTCTAACATTAACCGACTGCCAATCGTTGCAAGTTATTGTTGCTTGGCAAGAATCGGGACATCATCATGAGGAAGAAGCCAAGGAGATCAACTTCCCTAATTTGACACAGTTGGAACTTGCAGAACTACCAAGCCTCGTTGGGATATGTAGTAAAAAAGTCTGCAAGCTCAACTTCTCTAAATTGTTAGATTTACAACTCAGAACGCTTCCGCGATTCAGTGGTCAGTGGTTGAATGGTTTGGCTCCAACAAGTAACTCGAATGATGTCGATGTACAACATCTATTCGACCCCAAGGCCCTCCTCACAGCGGCACCTTCGGGTGTCAATGATGTCAAAACCAACATGCCGGGCAGCGTCCCGATGAACATGTCGGGCAGCGTCCCGATGAACATATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

1005

Amino Acids

112.9

Weight (kDa)

5.97

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 159 - 319 8.5e-31 NB-ARC domain
LRR_14 PF23598 601 - 902 5.6e-06 Leucine-rich repeat region
LRR_RPS2 PF23247 828 - 938 2.3e-11 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1674
AccB1I GGYRCC 1 cut(s) 2929
AccBSI CCGCTC 1 cut(s) 1213
AccI GTMKAC 2 cut(s) 2146, 2188
AccII CGCG 2 cut(s) 147, 2830
AccIII TCCGGA 1 cut(s) 361
AclI AACGTT 2 cut(s) 99, 1697
AclWI GGATC 3 cut(s) 237, 968, 1855
AcsI RAATTY 4 cut(s) 181, 457, 896, 1874
AcuI CTGAAG 1 cut(s) 2489
AcvI CACGTG 1 cut(s) 2426
AdeI CACNNNGTG 2 cut(s) 1498, 2393
AfaI GTAC 8 cut(s) 44, 1005, 1534, 1558, 1866, 1982, 2169, 2892
AfiI CCNNNNNNNGG 5 cut(s) 339, 1118, 1139, 1676, 2926
AflIII ACRYGT 5 cut(s) 254, 1167, 2164, 2423, 2985
AgeI ACCGGT 1 cut(s) 55
AjiI CACGTC 3 cut(s) 151, 1429, 2165
AjnI CCWGG 4 cut(s) 176, 222, 438, 2610
Alw21I GWGCWC 1 cut(s) 2485
Alw26I GTCTC 6 cut(s) 113, 182, 237, 1116, 2227, 2278
Alw44I GTGCAC 1 cut(s) 2481
AlwI GGATC 3 cut(s) 237, 968, 1855
Ama87I CYCGRG 3 cut(s) 977, 1007, 1518
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 4 cut(s) 426, 685, 2325, 2913
ApaLI GTGCAC 1 cut(s) 2481
ApeKI GCWGC 6 cut(s) 170, 291, 410, 982, 2970, 2994
ApoI RAATTY 4 cut(s) 181, 457, 896, 1874
ArsI GACNNNNNNTTYG 2 cut(s) 1750, 1782
AsiGI ACCGGT 1 cut(s) 55
Asp700I GAANNNNTTC 2 cut(s) 57, 1731
AspA2I CCTAGG 2 cut(s) 1840, 2308
AspLEI GCGC 2 cut(s) 1055, 2252
AspS9I GGNCC 8 cut(s) 220, 426, 685, 1515, 1602, 1813, 2326, 2914
AsuC2I CCSGG 4 cut(s) 1519, 1520, 2561, 2967
AsuHPI GGTGA 3 cut(s) 191, 580, 1294
AvaI CYCGRG 3 cut(s) 977, 1007, 1518
AvaII GGWCC 4 cut(s) 220, 1515, 1602, 1813
AvrII CCTAGG 2 cut(s) 1840, 2308
AxyI CCTNAGG 1 cut(s) 1869
BaeGI GKGCMC 2 cut(s) 1616, 2485
BaeI ACNNNNGTAYC 2 cut(s) 1516, 1549
BanI GGYRCC 1 cut(s) 2929
BauI CACGAG 1 cut(s) 2217
BbrPI CACGTG 1 cut(s) 2426
BbsI GAAGAC 1 cut(s) 2594
Bbv12I GWGCWC 1 cut(s) 2485
BbvI GCAGC 6 cut(s) 182, 278, 397, 969, 2982, 3006
BccI CCATC 4 cut(s) 487, 943, 1013, 1337
BceAI ACGGC 2 cut(s) 341, 1424
BcgI CGANNNNNNTGC 2 cut(s) 908, 942
BciT130I CCWGG 4 cut(s) 178, 224, 440, 2612
BciVI GTATCC 2 cut(s) 244, 1517
BcnI CCSGG 4 cut(s) 1519, 1520, 2561, 2967
BcoDI GTCTC 6 cut(s) 113, 182, 237, 1116, 2227, 2278
BfaI CTAG 9 cut(s) 35, 605, 888, 1619, 1713, 1841, 1904, 1970, 2309
BfmI CTRYAG 2 cut(s) 2045, 2442
BfuI GTATCC 2 cut(s) 244, 1517
BglII AGATCT 4 cut(s) 210, 1642, 2242, 2472
BisI GCNGC 8 cut(s) 171, 292, 411, 538, 983, 2928, 2971, 2995
BlnI CCTAGG 2 cut(s) 1840, 2308
BlpI GCTNAGC 1 cut(s) 2121
BlsI GCNGC 8 cut(s) 172, 293, 412, 539, 984, 2929, 2972, 2996
BmcAI AGTACT 1 cut(s) 1558
Bme1390I CCNGG 8 cut(s) 178, 224, 440, 1519, 1520, 2561, 2612, 2967
Bme18I GGWCC 4 cut(s) 220, 1515, 1602, 1813
BmeT110I CYCGRG 3 cut(s) 977, 1007, 1518
BmgBI CACGTC 3 cut(s) 151, 1429, 2165
BmgT120I GGNCC 8 cut(s) 220, 426, 685, 1515, 1602, 1813, 2326, 2914
BmiI GGNNCC 6 cut(s) 308, 427, 1517, 1814, 2862, 2931
BmrFI CCNGG 8 cut(s) 178, 224, 440, 1519, 1520, 2561, 2612, 2967
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 6 cut(s) 452, 916, 2119, 2338, 2386, 2557
BmuI ACTGGG 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 2594
BpmI CTGGAG 2 cut(s) 975, 1526
Bpu1102I GCTNAGC 1 cut(s) 2121
BpuEI CTTGAG 2 cut(s) 355, 2251
BpuMI CCSGG 4 cut(s) 1519, 1520, 2561, 2967
BsaAI YACGTR 1 cut(s) 2426
BsaBI GATNNNNATC 1 cut(s) 1726
BsaJI CCNNGG 8 cut(s) 438, 1356, 1518, 1519, 1840, 2308, 2697, 2910
BsaWI WCCGGW 2 cut(s) 55, 361
BsaXI ACNNNNNCTCC 2 cut(s) 1499, 1529
Bsc4I CCNNNNNNNGG 5 cut(s) 339, 1118, 1139, 1676, 2926
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 6 cut(s) 816, 1028, 1509, 2009, 2519, 2599
Bse21I CCTNAGG 1 cut(s) 1869
Bse8I GATNNNNATC 1 cut(s) 1726
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 4 cut(s) 178, 224, 440, 2612
BseDI CCNNGG 8 cut(s) 438, 1356, 1518, 1519, 1840, 2308, 2697, 2910
BseGI GGATG 5 cut(s) 370, 443, 1174, 1348, 2572
BseJI GATNNNNATC 1 cut(s) 1726
BseLI CCNNNNNNNGG 5 cut(s) 339, 1118, 1139, 1676, 2926
BseMII CTCAG 4 cut(s) 1677, 1798, 1860, 2830
BseNI ACTGG 6 cut(s) 816, 1028, 1509, 2009, 2519, 2599
BseRI GAGGAG 2 cut(s) 424, 2909
BseSI GKGCMC 2 cut(s) 1616, 2485
BseXI GCAGC 6 cut(s) 182, 278, 397, 969, 2982, 3006
BseYI CCCAGC 1 cut(s) 682
Bsh1236I CGCG 2 cut(s) 147, 2830
BshFI GGCC 4 cut(s) 428, 687, 2327, 2915
BshNI GGYRCC 1 cut(s) 2929
BshTI ACCGGT 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 2485
BsiHKCI CYCGRG 3 cut(s) 977, 1007, 1518
BsiSI CCGG 5 cut(s) 56, 362, 1519, 2560, 2966
BslFI GGGAC 5 cut(s) 1501, 1826, 2688, 2960, 2984
BslI CCNNNNNNNGG 5 cut(s) 339, 1118, 1139, 1676, 2926
BsmAI GTCTC 6 cut(s) 113, 182, 237, 1116, 2227, 2278
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 5 cut(s) 1501, 1826, 2688, 2960, 2984
BsmI GAATGC 4 cut(s) 139, 293, 328, 1425
BsnI GGCC 4 cut(s) 428, 687, 2327, 2915
BsoBI CYCGRG 3 cut(s) 977, 1007, 1518
Bsp1286I GDGCHC 2 cut(s) 1616, 2485
Bsp13I TCCGGA 1 cut(s) 361
Bsp1407I TGTACA 1 cut(s) 2890
Bsp143I GATC 8 cut(s) 210, 229, 973, 1642, 1847, 2242, 2472, 2703
Bsp1720I GCTNAGC 1 cut(s) 2121
BspANI GGCC 4 cut(s) 428, 687, 2327, 2915
BspCNI CTCAG 4 cut(s) 1676, 1797, 1861, 2829
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 2 cut(s) 147, 2830
BspHI TCATGA 2 cut(s) 1561, 2683
BspLI GGNNCC 6 cut(s) 308, 427, 1517, 1814, 2862, 2931
BspMAI CTGCAG 1 cut(s) 2049
BspPI GGATC 3 cut(s) 237, 968, 1855
BspT107I GGYRCC 1 cut(s) 2929
BsrBI CCGCTC 1 cut(s) 1213
BsrFI RCCGGY 1 cut(s) 55
BsrGI TGTACA 1 cut(s) 2890
BsrI ACTGG 6 cut(s) 816, 1028, 1509, 2009, 2519, 2599
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 8 cut(s) 438, 1356, 1518, 1519, 1840, 2308, 2697, 2910
BssMI GATC 8 cut(s) 210, 229, 973, 1642, 1847, 2242, 2472, 2703
BssNAI GTATAC 2 cut(s) 2147, 2189
BssSI CACGAG 1 cut(s) 2217
BssT1I CCWWGG 5 cut(s) 1356, 1840, 2308, 2697, 2910
Bst1107I GTATAC 2 cut(s) 2147, 2189
Bst2BI CACGAG 1 cut(s) 2217
Bst2UI CCWGG 4 cut(s) 178, 224, 440, 2612
Bst6I CTCTTC 3 cut(s) 1401, 1590, 2268
BstAUI TGTACA 1 cut(s) 2890
BstBAI YACGTR 1 cut(s) 2426
BstC8I GCNNGC 8 cut(s) 430, 618, 1078, 1290, 1437, 2108, 2208, 2783
BstDEI CTNAG 8 cut(s) 750, 1654, 1663, 1769, 1784, 1869, 2121, 2816
BstENI CCTNNNNNAGG 1 cut(s) 337
BstF5I GGATG 5 cut(s) 370, 443, 1174, 1348, 2572
BstFNI CGCG 2 cut(s) 147, 2830
BstHHI GCGC 2 cut(s) 1055, 2252
BstKTI GATC 8 cut(s) 213, 232, 976, 1645, 1850, 2245, 2475, 2706
BstMAI GTCTC 6 cut(s) 113, 182, 237, 1116, 2227, 2278
BstMBI GATC 8 cut(s) 210, 229, 973, 1642, 1847, 2242, 2472, 2703
BstMWI GCNNNNNNNGC 6 cut(s) 300, 543, 552, 796, 1620, 2256
BstNI CCWGG 4 cut(s) 178, 224, 440, 2612
BstNSI RCATGY 6 cut(s) 258, 620, 1292, 2582, 2965, 2989
BstSCI CCNGG 8 cut(s) 176, 222, 438, 1517, 1518, 2559, 2610, 2965
BstSFI CTRYAG 2 cut(s) 2045, 2442
BstSLI GKGCMC 2 cut(s) 1616, 2485
BstUI CGCG 2 cut(s) 147, 2830
BstV1I GCAGC 6 cut(s) 182, 278, 397, 969, 2982, 3006
BstV2I GAAGAC 1 cut(s) 2594
BstX2I RGATCY 5 cut(s) 210, 1642, 1847, 2242, 2472
BstYI RGATCY 5 cut(s) 210, 1642, 1847, 2242, 2472
BstZ17I GTATAC 2 cut(s) 2147, 2189
Bsu36I CCTNAGG 1 cut(s) 1869
BsuI GTATCC 2 cut(s) 244, 1517
BsuRI GGCC 4 cut(s) 428, 687, 2327, 2915
BtrI CACGTC 3 cut(s) 151, 1429, 2165
BtsCI GGATG 5 cut(s) 370, 443, 1174, 1348, 2572
Cac8I GCNNGC 8 cut(s) 430, 618, 1078, 1290, 1437, 2108, 2208, 2783
CciI TCATGA 2 cut(s) 1561, 2683
CfoI GCGC 2 cut(s) 1055, 2252
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 8 cut(s) 220, 426, 685, 1515, 1602, 1813, 2326, 2914
Cfr9I CCCGGG 1 cut(s) 1518
CseI GACGC 4 cut(s) 153, 1294, 2962, 2986
CsiI ACCWGGT 1 cut(s) 222
Csp6I GTAC 8 cut(s) 43, 1004, 1533, 1557, 1865, 1981, 2168, 2891
CspAI ACCGGT 1 cut(s) 55
CviQI GTAC 8 cut(s) 43, 1004, 1533, 1557, 1865, 1981, 2168, 2891
DdeI CTNAG 8 cut(s) 750, 1654, 1663, 1769, 1784, 1869, 2121, 2816
DpnI GATC 8 cut(s) 212, 231, 975, 1644, 1849, 2244, 2474, 2705
DpnII GATC 8 cut(s) 210, 229, 973, 1642, 1847, 2242, 2472, 2703
DraI TTTAAA 1 cut(s) 1879
DraIII CACNNNGTG 2 cut(s) 1498, 2393
Eam1104I CTCTTC 3 cut(s) 1401, 1590, 2268
EarI CTCTTC 3 cut(s) 1401, 1590, 2268
EciI GGCGGA 5 cut(s) 299, 561, 1826, 1928, 2579
Eco130I CCWWGG 5 cut(s) 1356, 1840, 2308, 2697, 2910
Eco32I GATATC 1 cut(s) 865
Eco47I GGWCC 4 cut(s) 220, 1515, 1602, 1813
Eco57I CTGAAG 1 cut(s) 2489
Eco72I CACGTG 1 cut(s) 2426
Eco81I CCTNAGG 1 cut(s) 1869
Eco88I CYCGRG 3 cut(s) 977, 1007, 1518
EcoNI CCTNNNNNAGG 1 cut(s) 337
EcoO109I RGGNCCY 2 cut(s) 1813, 2914
EcoRI GAATTC 1 cut(s) 181
EcoRII CCWGG 4 cut(s) 176, 222, 438, 2610
EcoRV GATATC 1 cut(s) 865
EcoT14I CCWWGG 5 cut(s) 1356, 1840, 2308, 2697, 2910
EcoT22I ATGCAT 3 cut(s) 931, 1425, 2572
ErhI CCWWGG 5 cut(s) 1356, 1840, 2308, 2697, 2910
Esp3I CGTCTC 1 cut(s) 113
FalI AAGNNNNNCTT 2 cut(s) 2774, 2806
FaqI GGGAC 5 cut(s) 1501, 1826, 2688, 2960, 2984
FauI CCCGC 2 cut(s) 792, 1206
FauNDI CATATG 1 cut(s) 533
FblI GTMKAC 2 cut(s) 2146, 2188
Fnu4HI GCNGC 8 cut(s) 171, 292, 411, 538, 983, 2928, 2971, 2995
FokI GGATG 5 cut(s) 377, 430, 1161, 1355, 2579
Fsp4HI GCNGC 8 cut(s) 171, 292, 411, 538, 983, 2928, 2971, 2995
FspBI CTAG 9 cut(s) 35, 605, 888, 1619, 1713, 1841, 1904, 1970, 2309
GlaI GCGC 2 cut(s) 1054, 2251
GluI GCNGC 8 cut(s) 171, 292, 411, 538, 983, 2928, 2971, 2995
GsaI CCCAGC 1 cut(s) 686
GsuI CTGGAG 2 cut(s) 975, 1526
HaeIII GGCC 4 cut(s) 428, 687, 2327, 2915
HapII CCGG 5 cut(s) 56, 362, 1519, 2560, 2966
HgaI GACGC 4 cut(s) 153, 1294, 2962, 2986
HhaI GCGC 2 cut(s) 1055, 2252
Hin6I GCGC 2 cut(s) 1053, 2250
HinP1I GCGC 2 cut(s) 1053, 2250
HincII GTYRAC 2 cut(s) 2061, 2416
HindII GTYRAC 2 cut(s) 2061, 2416
HindIII AAGCTT 1 cut(s) 2123
HpaII CCGG 5 cut(s) 56, 362, 1519, 2560, 2966
HphI GGTGA 3 cut(s) 191, 580, 1294
Hpy166II GTNNAC 8 cut(s) 45, 1363, 2061, 2147, 2168, 2189, 2416, 2483
Hpy8I GTNNAC 8 cut(s) 45, 1363, 2061, 2147, 2168, 2189, 2416, 2483
Hpy99I CGWCG 2 cut(s) 152, 2547
HpyAV CCTTC 6 cut(s) 416, 479, 589, 1466, 2365, 2943
HpyCH4IV ACGT 9 cut(s) 99, 150, 909, 1167, 1428, 1697, 2164, 2425, 2545
HpyF10VI GCNNNNNNNGC 6 cut(s) 300, 543, 552, 796, 1620, 2256
HpyF3I CTNAG 8 cut(s) 750, 1654, 1663, 1769, 1784, 1869, 2121, 2816
HpySE526I ACGT 9 cut(s) 99, 150, 909, 1167, 1428, 1697, 2164, 2425, 2545
HspAI GCGC 2 cut(s) 1053, 2250
Kpn2I TCCGGA 1 cut(s) 361
Kzo9I GATC 8 cut(s) 210, 229, 973, 1642, 1847, 2242, 2472, 2703
LmnI GCTCC 3 cut(s) 437, 2038, 2866
Lsp1109I GCAGC 6 cut(s) 182, 278, 397, 969, 2982, 3006
LweI GCATC 6 cut(s) 452, 916, 2119, 2338, 2386, 2557
MabI ACCWGGT 1 cut(s) 222
MaeI CTAG 9 cut(s) 35, 605, 888, 1619, 1713, 1841, 1904, 1970, 2309
MaeII ACGT 9 cut(s) 99, 150, 909, 1167, 1428, 1697, 2164, 2425, 2545
MaeIII GTNAC 9 cut(s) 95, 844, 1101, 1190, 1282, 1578, 2219, 2383, 2870
MalI GATC 8 cut(s) 212, 231, 975, 1644, 1849, 2244, 2474, 2705
MbiI CCGCTC 1 cut(s) 1213
MboI GATC 8 cut(s) 210, 229, 973, 1642, 1847, 2242, 2472, 2703
MflI RGATCY 5 cut(s) 210, 1642, 1847, 2242, 2472
MhlI GDGCHC 2 cut(s) 1616, 2485
MlyI GAGTC 2 cut(s) 352, 943
MmeI TCCRAC 5 cut(s) 198, 471, 1371, 2709, 2888
Mph1103I ATGCAT 3 cut(s) 931, 1425, 2572
MroI TCCGGA 1 cut(s) 361
MroXI GAANNNNTTC 2 cut(s) 57, 1731
MslI CAYNNNNRTG 2 cut(s) 2394, 2682
MspA1I CMGCKG 1 cut(s) 2927
MspI CCGG 5 cut(s) 56, 362, 1519, 2560, 2966
MspR9I CCNGG 8 cut(s) 178, 224, 440, 1519, 1520, 2561, 2612, 2967
Mva1269I GAATGC 4 cut(s) 139, 293, 328, 1425
MvaI CCWGG 4 cut(s) 178, 224, 440, 2612
MvnI CGCG 2 cut(s) 147, 2830
MwoI GCNNNNNNNGC 6 cut(s) 300, 543, 552, 796, 1620, 2256
NciI CCSGG 4 cut(s) 1519, 1520, 2561, 2967
NdeI CATATG 1 cut(s) 533
NdeII GATC 8 cut(s) 210, 229, 973, 1642, 1847, 2242, 2472, 2703
NlaIV GGNNCC 6 cut(s) 308, 427, 1517, 1814, 2862, 2931
NmuCI GTSAC 4 cut(s) 1282, 1578, 2219, 2383
NsiI ATGCAT 3 cut(s) 931, 1425, 2572
NspI RCATGY 6 cut(s) 258, 620, 1292, 2582, 2965, 2989
PaeI GCATGC 2 cut(s) 620, 1292
PaeR7I CTCGAG 1 cut(s) 1007
PagI TCATGA 2 cut(s) 1561, 2683
PciI ACATGT 2 cut(s) 254, 2985
PcsI WCGNNNNNNNCGW 2 cut(s) 238, 915
PctI GAATGC 4 cut(s) 139, 293, 328, 1425
PdmI GAANNNNTTC 2 cut(s) 57, 1731
PinAI ACCGGT 1 cut(s) 55
PkrI GCNGC 8 cut(s) 172, 293, 412, 539, 984, 2929, 2972, 2996
PleI GAGTC 2 cut(s) 352, 942
PmaCI CACGTG 1 cut(s) 2426
PmlI CACGTG 1 cut(s) 2426
PpsI GAGTC 2 cut(s) 352, 942
Ppu21I YACGTR 1 cut(s) 2426
PpuMI RGGWCCY 1 cut(s) 1813
PscI ACATGT 2 cut(s) 254, 2985
PsiI TTATAA 1 cut(s) 1674
Psp1406I AACGTT 2 cut(s) 99, 1697
Psp5II RGGWCCY 1 cut(s) 1813
Psp6I CCWGG 4 cut(s) 176, 222, 438, 2610
PspCI CACGTG 1 cut(s) 2426
PspFI CCCAGC 1 cut(s) 682
PspGI CCWGG 4 cut(s) 176, 222, 438, 2610
PspN4I GGNNCC 6 cut(s) 308, 427, 1517, 1814, 2862, 2931
PspPI GGNCC 8 cut(s) 220, 426, 685, 1515, 1602, 1813, 2326, 2914
PspPPI RGGWCCY 1 cut(s) 1813
PstI CTGCAG 1 cut(s) 2049
PsuI RGATCY 5 cut(s) 210, 1642, 1847, 2242, 2472
RsaI GTAC 8 cut(s) 44, 1005, 1534, 1558, 1866, 1982, 2169, 2892
RsaNI GTAC 8 cut(s) 43, 1004, 1533, 1557, 1865, 1981, 2168, 2891
RseI CAYNNNNRTG 2 cut(s) 2394, 2682
SatI GCNGC 8 cut(s) 171, 292, 411, 538, 983, 2928, 2971, 2995
Sau3AI GATC 8 cut(s) 210, 229, 973, 1642, 1847, 2242, 2472, 2703
Sau96I GGNCC 8 cut(s) 220, 426, 685, 1515, 1602, 1813, 2326, 2914
ScaI AGTACT 1 cut(s) 1558
SchI GAGTC 2 cut(s) 352, 943
ScrFI CCNGG 8 cut(s) 178, 224, 440, 1519, 1520, 2561, 2612, 2967
SduI GDGCHC 2 cut(s) 1616, 2485
SexAI ACCWGGT 1 cut(s) 222
SfaNI GCATC 6 cut(s) 452, 916, 2119, 2338, 2386, 2557
SfcI CTRYAG 2 cut(s) 2045, 2442
Sfr274I CTCGAG 1 cut(s) 1007
SinI GGWCC 4 cut(s) 220, 1515, 1602, 1813
SlaI CTCGAG 1 cut(s) 1007
SmaI CCCGGG 1 cut(s) 1520
SmiMI CAYNNNNRTG 2 cut(s) 2394, 2682
SmlI CTYRAG 3 cut(s) 334, 1007, 2230
SmoI CTYRAG 3 cut(s) 334, 1007, 2230
SphI GCATGC 2 cut(s) 620, 1292
SspMI CTAG 9 cut(s) 35, 605, 888, 1619, 1713, 1841, 1904, 1970, 2309
StyD4I CCNGG 8 cut(s) 176, 222, 438, 1517, 1518, 2559, 2610, 2965
StyI CCWWGG 5 cut(s) 1356, 1840, 2308, 2697, 2910
TaiI ACGT 9 cut(s) 102, 153, 912, 1170, 1431, 1700, 2167, 2428, 2548
TatI WGTACW 5 cut(s) 42, 1532, 1556, 1980, 2890
TauI GCSGC 2 cut(s) 540, 2930
TseFI GTSAC 4 cut(s) 1282, 1578, 2219, 2383
TseI GCWGC 6 cut(s) 170, 291, 410, 982, 2970, 2994
Tsp45I GTSAC 4 cut(s) 1282, 1578, 2219, 2383
TspDTI ATGAA 9 cut(s) 6, 435, 470, 1172, 1608, 2022, 2331, 2495, 2996
TspGWI ACGGA 3 cut(s) 1465, 1509, 1834
TspMI CCCGGG 1 cut(s) 1518
VneI GTGCAC 1 cut(s) 2481
VpaK11BI GGWCC 4 cut(s) 220, 1515, 1602, 1813
XagI CCTNNNNNAGG 1 cut(s) 337
XapI RAATTY 4 cut(s) 181, 457, 896, 1874
XbaI TCTAGA 1 cut(s) 1712
XceI RCATGY 6 cut(s) 258, 620, 1292, 2582, 2965, 2989
XcmI CCANNNNNNNNNTGG 1 cut(s) 1509
XhoI CTCGAG 1 cut(s) 1007
XmaI CCCGGG 1 cut(s) 1518
XmaJI CCTAGG 2 cut(s) 1840, 2308
XmiI GTMKAC 2 cut(s) 2146, 2188
XmnI GAANNNNTTC 2 cut(s) 57, 1731
XspI CTAG 9 cut(s) 35, 605, 888, 1619, 1713, 1841, 1904, 1970, 2309
ZrmI AGTACT 1 cut(s) 1558
Zsp2I ATGCAT 3 cut(s) 931, 1425, 2572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.