Rh7AG055200

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000203
Physical Location & Seq
Reverse (-)
3830385 .. 3830714
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG055200.1

Sequence Viewer

Length: 330 bp
ATGACTAATGAGGTGGATAAACTCCTTGCTAATGAACCCAGGACTATAGCACATCCTGCTCTTCATCCAGAGGTGGAATTCCAACCCACAGAGGACTTATTGCATGAAGGTGGCAGCTCCTCAGATACATCAAACCAAGAACAGGTACCTGCATATGAAGGAAAAAATATTAATTTTGATTCAAGAAGATCAACCATTAGAGATGTGATGGAAGCTCTCAAGGGGAATCAATTCAATCCGATTATCATATGGGGAATGGGAGGCATTGAGAAGACAACATTGATGGGGAAAATTTTTGAGAAAGCGAAGGAAGAGGGTCTGTTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

109

Amino Acids

12.24

Weight (kDa)

5.02

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 157
Acc65I GGTACC 1 cut(s) 145
AccB1I GGYRCC 1 cut(s) 145
AcsI RAATTY 2 cut(s) 77, 291
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 2 cut(s) 183, 235
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 117, 215
AluI AGCT 2 cut(s) 117, 215
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 2 cut(s) 77, 291
AseI ATTAAT 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 230
Asp718I GGTACC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 126
BccI CCATC 2 cut(s) 202, 277
BciT130I CCWGG 1 cut(s) 40
BfmI CTRYAG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 40
BpiI GAAGAC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 52, 64
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 142
Bsp143I GATC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 157
BspQI GCTCTTC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 38
BssMI GATC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 40
Bst6I CTCTTC 2 cut(s) 66, 306
BstAPI GCANNNNNTGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 52, 64
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 278
BtsCI GGATG 2 cut(s) 52, 64
BveI ACCTGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 146
CviAII CATG 1 cut(s) 104
CviJI RGCY 2 cut(s) 117, 215
CviKI_1 RGCY 2 cut(s) 117, 215
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 1 cut(s) 121
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
Eam1104I CTCTTC 2 cut(s) 66, 306
EarI CTCTTC 2 cut(s) 66, 306
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 38
FaeI CATG 1 cut(s) 107
FaiI YATR 6 cut(s) 47, 105, 154, 156, 248, 250
FatI CATG 1 cut(s) 103
FauNDI CATATG 2 cut(s) 154, 248
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 2 cut(s) 39, 51
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 107
HinfI GANTC 2 cut(s) 179, 226
Hpy188I TCNGA 2 cut(s) 124, 240
Hpy188III TCNNGA 2 cut(s) 68, 183
HpyAV CCTTC 3 cut(s) 101, 152, 301
HpyCH4V TGCA 2 cut(s) 103, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 1 cut(s) 107
KpnI GGTACC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 6 cut(s) 25, 52, 69, 81, 128, 162
Lsp1109I GCAGC 1 cut(s) 126
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MboII GAAGA 4 cut(s) 53, 198, 283, 323
MluCI AATT 4 cut(s) 77, 172, 230, 291
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 6 cut(s) 4, 64, 85, 130, 254, 307
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeI CATATG 2 cut(s) 154, 248
NdeII GATC 1 cut(s) 188
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 179, 226
PkrI GCNGC 1 cut(s) 116
PshBI ATTAAT 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 147
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 40
SetI ASST 7 cut(s) 15, 75, 112, 119, 147, 151, 217
SfcI CTRYAG 1 cut(s) 45
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 4 cut(s) 77, 172, 230, 291
SspI AATATT 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 38
TaqI TCGA 1 cut(s) 325
TasI AATT 4 cut(s) 77, 172, 230, 291
TfiI GAWTC 2 cut(s) 179, 226
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 4 cut(s) 48, 53, 120, 171
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 2 cut(s) 77, 291
XmnI GAANNNNTTC 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.