FvH4_2g17410

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000203
Physical Location & Seq
Reverse (-)
15010863 .. 15011078
216 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17410.t1

Sequence Viewer

Length: 216 bp
ATGGCAGATATTGTCATTACAGTTGTTGGAAAGTTAGCGGAGTACACAGTGGAACCTGTTCTGCGACAGTTTGGTTATCTGATTAACTACAAGAGCAATGTTGAAGATATCACCATGAAGGTTACAACTCTGACTGCTACAAGAGACGGGGTACAGTTACGTGTGGATGGAGCAAAGAGGAACTTGGAGGTTATTCTTCCCGAAGTTCAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

72

Amino Acids

7.95

Weight (kDa)

5.21

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 38
AfaI GTAC 2 cut(s) 44, 153
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 103
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 103
BseGI GGATG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BspACI CCGC 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 103
Bst4CI ACNGT 4 cut(s) 22, 49, 69, 156
BstBAI YACGTR 1 cut(s) 161
BstF5I GGATG 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 54
Csp6I GTAC 2 cut(s) 43, 152
CviAII CATG 1 cut(s) 115
CviQI GTAC 2 cut(s) 43, 152
Eco32I GATATC 1 cut(s) 109
EcoRV GATATC 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 1 cut(s) 118
FaiI YATR 1 cut(s) 116
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FatI CATG 1 cut(s) 114
FokI GGATG 1 cut(s) 179
Hin1II CATG 1 cut(s) 118
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 81, 132, 210
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 4 cut(s) 22, 49, 69, 156
HpyCH4IV ACGT 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 1 cut(s) 118
LmnI GCTCC 1 cut(s) 170
LpnPI CCDG 1 cut(s) 69
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 2 cut(s) 121, 156
MboII GAAGA 2 cut(s) 116, 188
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 2 cut(s) 171, 181
MroXI GAANNNNTTC 1 cut(s) 57
MseI TTAA 1 cut(s) 84
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 54
RsaI GTAC 2 cut(s) 44, 153
RsaNI GTAC 2 cut(s) 43, 152
SaqAI TTAA 1 cut(s) 84
SetI ASST 4 cut(s) 58, 123, 163, 192
SgeI CNNG 8 cut(s) 68, 103, 127, 153, 160, 173, 196, 212
SsiI CCGC 1 cut(s) 38
TaaI ACNGT 4 cut(s) 22, 49, 69, 156
TaiI ACGT 1 cut(s) 163
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.