Prupe.8G185600_v2.0.a1

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000203
Physical Location & Seq
Reverse (-)
18361267 .. 18362598
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G185600.1

Sequence Viewer

Length: 1296 bp
ATGGCAGTTGTGTCCCTTAATGCAAACTTGAGACGAATACAAGGTGAGATTGCAGAAATGCTACAACTGAATCTGGGGAATGGGAGTTTGTTTCAACGGGCGCAGGTGCTACATGCTAGAATGTCCCAAGACTCTAGGAGGTTGCTTGTAGTATTGGCTAATGTCCGGGACATGCCTGATCTTGAGGCCATCGGAATCCCTTATGGTGATACCGACACAAACGGAACGTGCAAGATCATGTTGACGTCAGGACTCATGAATGTACCAGCCAGTGTTGAGATGAGAGCCCAAAGACCTATTGCTTTTGAATCAAGAAATTCGATCCTTAGAGGCGTAATGGAAGCTCTAGCAGACGATCAAATCAATCCGATTGTAATATGTGGAAAGGGAGGTATTGGCAAGACAACCTTGGTGAAAGAAGTTAGTCAGAGAGCAAAAGCATGGCGTCTATATGATGAGGTTGTGATGGCAGTTTTTACCCCAAACCTTGACTTTAAATGTATTCAAGATCAAATTGCAGATTGTTTAGGTCTATCACTTGCAGGACAACCTTTATCTGCAAGAGCAAATAGCTTATGCCGAAGATTATCAGGGGATAAAAGGGTCCTTTTAATATTGGACAATGTTTCTATGCCACTGAATTTGGAGGAAATAGGAATTCCACTTTCTTGTGATAAGAAAGGTTGCAAGATTTTGGTATCATCGCGAAACGAAGATATATTTTCTGGAACCAAAAAGATTTTTTCGGTTGGTGTGTTGCTAGAACAAGAAGCGTGGAGTTTGTTTAGGGAGATGGCAGGCAGTTCCATTGAATCTCCCGAACTGCTTCCAGTAGCACAACAGGTTCTACATGAATGTGCTGGTTTACCAATTGCAATTGCAACAGTTGGAAGGGCACTGCATCAAAAGAGCAGGAAAGTGTGGATTGATGCACTGAGACAACTAAGAAAGCCCTGCCCAGCAAACATCTCAGGAATGATGCAAGAAGTGTATCGAAAAATAGAGTTGAGTTACGAGTGCTTAGGAAGCAAGGAAGCGAAAACATTTTTTCTGTTGTGCTGCCTACCTGAGAGCAATATTAATATAAGGGTTGAAGATTTAGTTGAATCTGGGATTAGAGTTGAGCTATTTAAGGGCATTGGTTCGGAGACTGAGGCATGGAACTGCGTAGAAACATTGGTTGATATACTCAAAAGTTGTCTTTTGTTGTTGGACGGTGACAAGGAACGATTTGTCAAAGTGCCTGATATAGTGCGCAGTGTGGGTTTATCAATAGCTGCTTCAAAATGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

432

Amino Acids

47.42

Weight (kDa)

7.41

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
AatII GACGTC 1 cut(s) 248
Acc16I TGCGCA 1 cut(s) 1256
Acc36I ACCTGC 1 cut(s) 94
AccII CGCG 1 cut(s) 706
AclWI GGATC 1 cut(s) 316
AcsI RAATTY 3 cut(s) 316, 640, 657
AcyI GRCGYC 2 cut(s) 245, 445
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 7 cut(s) 95, 308, 506, 812, 1094, 1106, 1284
AluBI AGCT 4 cut(s) 344, 573, 1126, 1277
AluI AGCT 4 cut(s) 344, 573, 1126, 1277
Alw26I GTCTC 3 cut(s) 25, 931, 1142
AlwI GGATC 1 cut(s) 316
AoxI GGCC 1 cut(s) 186
ApeKI GCWGC 2 cut(s) 1059, 1277
ApoI RAATTY 3 cut(s) 316, 640, 657
AseI ATTAAT 1 cut(s) 1080
Asp700I GAANNNNTTC 1 cut(s) 825
AspLEI GCGC 2 cut(s) 103, 1257
AspS9I GGNCC 1 cut(s) 604
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 4 cut(s) 56, 218, 424, 1229
AvaII GGWCC 1 cut(s) 604
BaeGI GKGCMC 1 cut(s) 898
BanII GRGCYC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 1046, 1264
BccI CCATC 3 cut(s) 197, 460, 787
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 3 cut(s) 25, 931, 1142
BfaI CTAG 4 cut(s) 117, 135, 347, 761
BfuAI ACCTGC 1 cut(s) 94
BisI GCNGC 2 cut(s) 1060, 1278
BlsI GCNGC 2 cut(s) 1061, 1279
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 604
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 2 cut(s) 605, 730
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 3 cut(s) 910, 919, 969
Bpu10I CCTNAGC 1 cut(s) 1021
BpuEI CTTGAG 2 cut(s) 49, 203
BpuMI CCSGG 1 cut(s) 167
BsaHI GRCGYC 2 cut(s) 245, 445
BsaJI CCNNGG 1 cut(s) 408
Bse1I ACTGG 2 cut(s) 270, 830
BseDI CCNNGG 1 cut(s) 408
BseMII CTCAG 4 cut(s) 926, 984, 1059, 1143
BseNI ACTGG 2 cut(s) 270, 830
BseSI GKGCMC 1 cut(s) 898
BseXI GCAGC 2 cut(s) 1046, 1264
BseYI CCCAGC 1 cut(s) 958
Bsh1236I CGCG 1 cut(s) 706
BshFI GGCC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 166
BslFI GGGAC 2 cut(s) 109, 182
BsmAI GTCTC 3 cut(s) 25, 931, 1142
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 2 cut(s) 109, 182
BsnI GGCC 1 cut(s) 188
Bsp1286I GDGCHC 2 cut(s) 289, 898
Bsp143I GATC 5 cut(s) 178, 234, 321, 355, 508
Bsp68I TCGCGA 1 cut(s) 706
BspANI GGCC 1 cut(s) 188
BspCNI CTCAG 4 cut(s) 927, 983, 1060, 1144
BspFNI CGCG 1 cut(s) 706
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 605, 730
BspMI ACCTGC 1 cut(s) 94
BspPI GGATC 1 cut(s) 316
BsrI ACTGG 2 cut(s) 270, 830
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 5 cut(s) 178, 234, 321, 355, 508
BssNI GRCGYC 2 cut(s) 245, 445
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 886, 1217
BstACI GRCGYC 2 cut(s) 245, 445
BstC8I GCNNGC 1 cut(s) 799
BstDEI CTNAG 7 cut(s) 326, 935, 944, 970, 1021, 1068, 1152
BstFNI CGCG 1 cut(s) 706
BstHHI GCGC 2 cut(s) 103, 1257
BstKTI GATC 5 cut(s) 181, 237, 324, 358, 511
BstMAI GTCTC 3 cut(s) 25, 931, 1142
BstMBI GATC 5 cut(s) 178, 234, 321, 355, 508
BstMWI GCNNNNNNNGC 1 cut(s) 1026
BstNSI RCATGY 2 cut(s) 116, 175
BstSCI CCNGG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 898
BstUI CGCG 1 cut(s) 706
BstV1I GCAGC 2 cut(s) 1046, 1264
BsuRI GGCC 1 cut(s) 188
BtgZI GCGATG 1 cut(s) 687
BtsI GCAGTG 2 cut(s) 896, 1264
BtsIMutI CAGTG 5 cut(s) 277, 635, 896, 932, 1264
BtuMI TCGCGA 1 cut(s) 706
BveI ACCTGC 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 799
CciI TCATGA 1 cut(s) 255
CfoI GCGC 2 cut(s) 103, 1257
Cfr13I GGNCC 1 cut(s) 604
CseI GACGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 263
CspCI CAANNNNNGTGG 4 cut(s) 624, 659, 755, 790
CviAII CATG 7 cut(s) 113, 172, 238, 256, 441, 851, 1158
CviJI RGCY 9 cut(s) 158, 188, 269, 287, 344, 573, 952, 1126, 1277
CviKI_1 RGCY 9 cut(s) 158, 188, 269, 287, 344, 573, 952, 1126, 1277
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 7 cut(s) 326, 935, 944, 970, 1021, 1068, 1152
DpnI GATC 5 cut(s) 180, 236, 323, 357, 510
DpnII GATC 5 cut(s) 178, 234, 321, 355, 508
DraI TTTAAA 1 cut(s) 496
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 7 cut(s) 116, 175, 241, 259, 444, 854, 1161
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 2 cut(s) 109, 182
FatI CATG 7 cut(s) 112, 171, 237, 255, 440, 850, 1157
Fnu4HI GCNGC 2 cut(s) 1060, 1278
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 1060, 1278
FspBI CTAG 4 cut(s) 117, 135, 347, 761
FspI TGCGCA 1 cut(s) 1256
GlaI GCGC 2 cut(s) 102, 1256
GluI GCNGC 2 cut(s) 1060, 1278
GsaI CCCAGC 1 cut(s) 962
HaeIII GGCC 1 cut(s) 188
HapII CCGG 1 cut(s) 166
HgaI GACGC 1 cut(s) 434
HhaI GCGC 2 cut(s) 103, 1257
Hin1I GRCGYC 2 cut(s) 245, 445
Hin1II CATG 7 cut(s) 116, 175, 241, 259, 444, 854, 1161
Hin6I GCGC 2 cut(s) 101, 1255
HinP1I GCGC 2 cut(s) 101, 1255
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HinfI GANTC 7 cut(s) 70, 131, 195, 252, 308, 812, 1106
HpaII CCGG 1 cut(s) 166
HphI GGTGA 4 cut(s) 56, 218, 424, 1229
Hpy166II GTNNAC 2 cut(s) 243, 866
Hpy188I TCNGA 4 cut(s) 194, 369, 429, 1147
Hpy188III TCNNGA 9 cut(s) 182, 249, 256, 312, 506, 705, 726, 818, 972
Hpy8I GTNNAC 2 cut(s) 243, 866
HpyAV CCTTC 1 cut(s) 885
HpyCH4III ACNGT 2 cut(s) 886, 1217
HpyCH4IV ACGT 2 cut(s) 227, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 1026
HpyF3I CTNAG 7 cut(s) 326, 935, 944, 970, 1021, 1068, 1152
HpySE526I ACGT 2 cut(s) 227, 245
Hsp92I GRCGYC 2 cut(s) 245, 445
Hsp92II CATG 7 cut(s) 116, 175, 241, 259, 444, 854, 1161
HspAI GCGC 2 cut(s) 101, 1255
Kzo9I GATC 5 cut(s) 178, 234, 321, 355, 508
Lsp1109I GCAGC 2 cut(s) 1046, 1264
LweI GCATC 3 cut(s) 910, 919, 969
MaeI CTAG 4 cut(s) 117, 135, 347, 761
MaeII ACGT 2 cut(s) 227, 245
MaeIII GTNAC 2 cut(s) 1010, 1217
MalI GATC 5 cut(s) 180, 236, 323, 357, 510
MboI GATC 5 cut(s) 178, 234, 321, 355, 508
MboII GAAGA 3 cut(s) 594, 725, 1106
MfeI CAATTG 2 cut(s) 870, 876
MhlI GDGCHC 2 cut(s) 289, 898
MluCI AATT 6 cut(s) 316, 513, 640, 657, 870, 876
MlyI GAGTC 2 cut(s) 125, 246
MmeI TCCRAC 2 cut(s) 868, 1191
MnlI CCTC 7 cut(s) 132, 178, 323, 383, 451, 640, 1147
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 5 cut(s) 18, 495, 611, 1080, 1131
MslI CAYNNNNRTG 1 cut(s) 855
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 167
MunI CAATTG 2 cut(s) 870, 876
MvnI CGCG 1 cut(s) 706
MwoI GCNNNNNNNGC 1 cut(s) 1026
NciI CCSGG 1 cut(s) 167
NdeII GATC 5 cut(s) 178, 234, 321, 355, 508
NlaIII CATG 7 cut(s) 116, 175, 241, 259, 444, 854, 1161
NlaIV GGNNCC 2 cut(s) 605, 730
NmuCI GTSAC 1 cut(s) 1217
NruI TCGCGA 1 cut(s) 706
NsbI TGCGCA 1 cut(s) 1256
NspI RCATGY 2 cut(s) 116, 175
PagI TCATGA 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 5 cut(s) 70, 195, 308, 812, 1106
PfoI TCCNGGA 1 cut(s) 165
PkrI GCNGC 2 cut(s) 1061, 1279
PleI GAGTC 2 cut(s) 125, 246
PpsI GAGTC 2 cut(s) 125, 246
PpuMI RGGWCCY 1 cut(s) 604
PshBI ATTAAT 1 cut(s) 1080
Psp5II RGGWCCY 1 cut(s) 604
PspFI CCCAGC 1 cut(s) 958
PspN4I GGNNCC 2 cut(s) 605, 730
PspPI GGNCC 1 cut(s) 604
PspPPI RGGWCCY 1 cut(s) 604
RruI TCGCGA 1 cut(s) 706
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 855
SaqAI TTAA 5 cut(s) 18, 495, 611, 1080, 1131
SatI GCNGC 2 cut(s) 1060, 1278
Sau3AI GATC 5 cut(s) 178, 234, 321, 355, 508
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 2 cut(s) 125, 246
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 2 cut(s) 289, 898
SfaNI GCATC 3 cut(s) 910, 919, 969
SinI GGWCC 1 cut(s) 604
SmiMI CAYNNNNRTG 1 cut(s) 855
SmlI CTYRAG 2 cut(s) 28, 182
SmoI CTYRAG 2 cut(s) 28, 182
Sse9I AATT 6 cut(s) 316, 513, 640, 657, 870, 876
SspI AATATT 2 cut(s) 615, 1078
SspMI CTAG 4 cut(s) 117, 135, 347, 761
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 886, 1217
TaiI ACGT 2 cut(s) 230, 248
TaqI TCGA 2 cut(s) 320, 994
TasI AATT 6 cut(s) 316, 513, 640, 657, 870, 876
TfiI GAWTC 5 cut(s) 70, 195, 308, 812, 1106
Tru1I TTAA 5 cut(s) 18, 495, 611, 1080, 1131
Tru9I TTAA 5 cut(s) 18, 495, 611, 1080, 1131
TscAI CASTG 5 cut(s) 277, 642, 903, 939, 1264
TseFI GTSAC 1 cut(s) 1217
TseI GCWGC 2 cut(s) 1059, 1277
Tsp45I GTSAC 1 cut(s) 1217
TspDTI ATGAA 2 cut(s) 272, 867
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 5 cut(s) 277, 642, 903, 939, 1264
VpaK11BI GGWCC 1 cut(s) 604
VspI ATTAAT 1 cut(s) 1080
XapI RAATTY 3 cut(s) 316, 640, 657
XceI RCATGY 2 cut(s) 116, 175
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 4 cut(s) 117, 135, 347, 761
ZraI GACGTC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.