RLG00000013004

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000203
Physical Location & Seq
Reverse (-)
24815087 .. 24815923
837 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013004

Sequence Viewer

Length: 837 bp
ATGGTGGGTGAAGTTGTTACCAGAGCAAGGACTGAGGGTCTATTCCATGAGTATACAAAGGCGGTTGTTTCCGTTGTTAATGAAAAACCTGATATAACTCATATAAGTAAGATTCAATCTGATATTGCAGAATTTCTGGGCCCAGAACTTAAAGAACAGGGTTTGGAAGCAAGAGCTGATAAGTTACGCAAAAGATTATCAGGTACTATGGGAGTTCTTGTGGTATTAGGTAATGTTTGGGAAACGCTGGATCTGCGGGAAATAGGGATTCCCAGTGGTCTAAACAGTTGTAAAATCTTGGTAACATCACGAAGCCAAGATATATTCAATGATATGGAAGAAACTAGAAAGAAATTCCCCATTAGTGTTTTGCCCAGAAGTGATGCATGGAGACTGTTTAAAAAGATGGCTGGAGATGGCATTGAATCTGATCCCGAGCTGCGTTCGATAGCAAAACAGGCACTCGAGAAATGTGATGGATTCCCAGTTGCAATTTCGACTCTGGGAAGCACACTGCGGAGGAAAACGAAACCATTCTGGAAAGATACACTTGGACTGTTACAAAAGCCTTTCAGGGGAGATATTCAAGGTATGAAGAAGAACGTGTATCAGTCAATTCGGTTGAGCAACGACTTTCTGGAAAAAGAGGAGGCCAAATCCTGTTTTCTGTTGTGTTGCATTTTTCGAGAAAGCACTAATATACCTGTTGAAGATTTGGTGACGCATGGATTTGGTCTTGGGGTCTTTCATAGAATTGATTCAATTGAACGGGGAAGGGATCGTGTAGAAGCCTTGGTTGACACACTCAAAAAGTTGCTATTTATTGTTGGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

279

Amino Acids

31.31

Weight (kDa)

8.73

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 31 - 138 8.8e-15 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 53
AciI CCGC 3 cut(s) 62, 256, 517
AclWI GGATC 3 cut(s) 258, 425, 786
AcsI RAATTY 2 cut(s) 131, 353
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 2 cut(s) 27, 575
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 7 cut(s) 116, 328, 425, 587, 710, 762, 767
AhdI GACNNNNNGTC 1 cut(s) 36
AluBI AGCT 2 cut(s) 176, 439
AluI AGCT 2 cut(s) 176, 439
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 3 cut(s) 258, 425, 786
Ama87I CYCGRG 2 cut(s) 434, 464
AoxI GGCC 2 cut(s) 139, 651
ApaI GGGCCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 2 cut(s) 131, 353
Asp700I GAANNNNTTC 2 cut(s) 533, 757
AspS9I GGNCC 2 cut(s) 139, 140
AsuHPI GGTGA 2 cut(s) 20, 730
AvaI CYCGRG 2 cut(s) 434, 464
BaeGI GKGCMC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 426
BccI CCATC 3 cut(s) 400, 410, 470
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 345
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmeRI GACNNNNNGTC 1 cut(s) 36
BmeT110I CYCGRG 2 cut(s) 434, 464
BmgT120I GGNCC 2 cut(s) 139, 140
BmiI GGNNCC 1 cut(s) 141
BmrI ACTGGG 2 cut(s) 267, 479
BmsI GCATC 1 cut(s) 373
BmuI ACTGGG 2 cut(s) 267, 479
BpmI CTGGAG 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 792
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 575
Bse1I ACTGG 2 cut(s) 273, 485
BseDI CCNNGG 1 cut(s) 792
BseLI CCNNNNNNNGG 2 cut(s) 27, 575
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 2 cut(s) 273, 485
BseRI GAGGAG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 426
BshFI GGCC 2 cut(s) 141, 653
BsiHKCI CYCGRG 2 cut(s) 434, 464
BslI CCNNNNNNNGG 2 cut(s) 27, 575
BsmAI GTCTC 1 cut(s) 385
BsnI GGCC 2 cut(s) 141, 653
BsoBI CYCGRG 2 cut(s) 434, 464
Bsp120I GGGCCC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 3 cut(s) 250, 430, 778
BspACI CCGC 3 cut(s) 62, 256, 517
BspANI GGCC 2 cut(s) 141, 653
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 141
BspPI GGATC 3 cut(s) 258, 425, 786
BsrI ACTGG 2 cut(s) 273, 485
BssECI CCNNGG 1 cut(s) 792
BssMI GATC 3 cut(s) 250, 430, 778
BssNAI GTATAC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 792
Bst1107I GTATAC 1 cut(s) 54
Bst4CI ACNGT 4 cut(s) 287, 396, 558, 834
BstDEI CTNAG 1 cut(s) 33
BstKTI GATC 3 cut(s) 253, 433, 781
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 3 cut(s) 250, 430, 778
BstMWI GCNNNNNNNGC 2 cut(s) 253, 458
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BstZ17I GTATAC 1 cut(s) 54
BsuRI GGCC 2 cut(s) 141, 653
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 280, 512
Cfr13I GGNCC 2 cut(s) 139, 140
CseI GACGC 1 cut(s) 730
Csp6I GTAC 1 cut(s) 204
CviAII CATG 3 cut(s) 47, 387, 725
CviJI RGCY 8 cut(s) 141, 176, 315, 410, 439, 568, 653, 791
CviKI_1 RGCY 8 cut(s) 141, 176, 315, 410, 439, 568, 653, 791
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 33
DpnI GATC 3 cut(s) 252, 432, 780
DpnII GATC 3 cut(s) 250, 430, 778
DraI TTTAAA 1 cut(s) 400
DriI GACNNNNNGTC 1 cut(s) 36
Eam1105I GACNNNNNGTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 792
Eco24I GRGCYC 1 cut(s) 143
Eco88I CYCGRG 2 cut(s) 434, 464
EcoT14I CCWWGG 1 cut(s) 792
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 3 cut(s) 50, 390, 728
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FatI CATG 3 cut(s) 46, 386, 724
FauI CCCGC 1 cut(s) 249
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 440
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 1 cut(s) 345
GluI GCNGC 1 cut(s) 440
GsuI CTGGAG 1 cut(s) 432
HaeIII GGCC 2 cut(s) 141, 653
HgaI GACGC 1 cut(s) 730
Hin1II CATG 3 cut(s) 50, 390, 728
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HinfI GANTC 6 cut(s) 112, 268, 425, 480, 499, 758
HphI GGTGA 2 cut(s) 20, 730
Hpy166II GTNNAC 2 cut(s) 54, 799
Hpy188I TCNGA 2 cut(s) 121, 430
Hpy188III TCNNGA 6 cut(s) 309, 434, 466, 538, 638, 686
Hpy8I GTNNAC 2 cut(s) 54, 799
HpyAV CCTTC 1 cut(s) 768
HpyCH4III ACNGT 4 cut(s) 287, 396, 558, 834
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 4 cut(s) 128, 386, 491, 678
HpyF10VI GCNNNNNNNGC 2 cut(s) 253, 458
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 3 cut(s) 50, 390, 728
Kzo9I GATC 3 cut(s) 250, 430, 778
Lsp1109I GCAGC 1 cut(s) 426
LweI GCATC 1 cut(s) 373
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 5 cut(s) 16, 183, 301, 558, 718
MalI GATC 3 cut(s) 252, 432, 780
MboI GATC 3 cut(s) 250, 430, 778
MboII GAAGA 4 cut(s) 350, 607, 610, 722
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 6 cut(s) 131, 353, 492, 615, 753, 762
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 1 cut(s) 808
MnlI CCTC 4 cut(s) 28, 513, 640, 643
Mph1103I ATGCAT 1 cut(s) 388
MroXI GAANNNNTTC 2 cut(s) 533, 757
MseI TTAA 3 cut(s) 78, 150, 399
MunI CAATTG 1 cut(s) 762
MwoI GCNNNNNNNGC 2 cut(s) 253, 458
NdeII GATC 3 cut(s) 250, 430, 778
NlaIII CATG 3 cut(s) 50, 390, 728
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 718
NsiI ATGCAT 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 464
PdmI GAANNNNTTC 2 cut(s) 533, 757
PfeI GAWTC 5 cut(s) 112, 268, 425, 480, 758
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
PspN4I GGNNCC 1 cut(s) 141
PspOMI GGGCCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 139, 140
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SaqAI TTAA 3 cut(s) 78, 150, 399
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 3 cut(s) 250, 430, 778
Sau96I GGNCC 2 cut(s) 139, 140
SchI GAGTC 1 cut(s) 493
SduI GDGCHC 1 cut(s) 143
SetI ASST 8 cut(s) 91, 178, 205, 232, 441, 592, 606, 706
SfaNI GCATC 1 cut(s) 373
Sfr274I CTCGAG 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 6 cut(s) 131, 353, 492, 615, 753, 762
SsiI CCGC 3 cut(s) 62, 256, 517
SspMI CTAG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 4 cut(s) 287, 396, 558, 834
TaiI ACGT 1 cut(s) 606
TaqI TCGA 4 cut(s) 446, 465, 497, 685
TasI AATT 6 cut(s) 131, 353, 492, 615, 753, 762
TfiI GAWTC 5 cut(s) 112, 268, 425, 480, 758
Tru1I TTAA 3 cut(s) 78, 150, 399
Tru9I TTAA 3 cut(s) 78, 150, 399
TscAI CASTG 2 cut(s) 280, 519
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 1 cut(s) 439
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 3 cut(s) 96, 608, 737
TspGWI ACGGA 1 cut(s) 61
TspRI CASTG 2 cut(s) 280, 519
XapI RAATTY 2 cut(s) 131, 353
XhoI CTCGAG 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 53
XmnI GAANNNNTTC 2 cut(s) 533, 757
XspI CTAG 1 cut(s) 345
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.