Rroxscaffold_3G00270870

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000203
Physical Location & Seq
Forward (+)
63334894 .. 63335490
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270870.1

Sequence Viewer

Length: 597 bp
ATGTCTCCATTGTTACTACTGCCATCACTTCCAGTTTTGAAAAACCTTCATACACTCTGTCTAGATGTGTGCGATCTCAAGTGTGATGTATCTATAATTGGGGAGCTAAGGACACTCGTGATACTCAGTTTGTGTGGATCCGACATTGAACAGTTACCTGATACATTTAAAAATTTGTCTAATCTGAGATTTCTTGATTTGTCCATATGTAGTGAGCTAAAAATAACATCACCAGGTGTTATATCAAGTTTATCCCGACTAGAAGAATTGTACATGTGGCATAGCTTCGAGGATTGGGTAGTTGAGAAACTAGCCTCGATCGAAACAACCAATTGGATCTCTCAATTGGAGGCTGAGGAGAGATTTGATAAATCCGAAGAAGTGGACTATTGGGAAACGCCACTGGATACATGGAAGAGATTCAACAGATTGGAGGTTGAGCGACCAGCAAACGTAGGAAACCAGTTTAGAAAAGAGGTTCAAGGTCTGGACAGAGCAAACAATGAGCACACAAGGTGGGCTAACTCCATGGACTGGAAAACTGGGATACTTGCAGAGTTACTTTCCTTGTCCCATTTAACTGAAATCACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

198

Amino Acids

22.82

Weight (kDa)

4.69

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 32 - 113 5.4e-08 Leucine-rich repeat region
LRR_8 PF13855 37 - 92 4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 534
AclWI GGATC 3 cut(s) 132, 145, 344
AcsI RAATTY 1 cut(s) 172
AdeI CACNNNGTG 2 cut(s) 236, 516
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 534
AflIII ACRYGT 1 cut(s) 273
AgsI TTSAA 4 cut(s) 40, 149, 424, 482
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 3 cut(s) 106, 217, 285
AluI AGCT 3 cut(s) 106, 217, 285
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 132, 145, 344
ApoI RAATTY 1 cut(s) 172
Asp700I GAANNNNTTC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 222
BamHI GGATCC 1 cut(s) 137
BauI CACGAG 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 510
BbvCI CCTCAGC 1 cut(s) 354
BccI CCATC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 2 cut(s) 400, 540
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 62, 260, 311
BfuI GTATCC 2 cut(s) 400, 540
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 1 cut(s) 552
BmuI ACTGGG 1 cut(s) 552
Bpu10I CCTNAGC 2 cut(s) 107, 354
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 534
Bse1I ACTGG 5 cut(s) 32, 408, 463, 539, 547
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMII CTCAG 3 cut(s) 139, 176, 345
BseNI ACTGG 5 cut(s) 32, 408, 463, 539, 547
BseRI GAGGAG 1 cut(s) 371
Bsh1285I CGRYCG 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 510
BslFI GGGAC 1 cut(s) 556
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 556
Bsp1286I GDGCHC 1 cut(s) 510
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 4 cut(s) 73, 137, 318, 336
Bsp19I CCATGG 1 cut(s) 528
BspCNI CTCAG 3 cut(s) 138, 177, 346
BspLI GGNNCC 1 cut(s) 139
BspPI GGATC 3 cut(s) 132, 145, 344
BsrGI TGTACA 1 cut(s) 270
BsrI ACTGG 5 cut(s) 32, 408, 463, 539, 547
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 4 cut(s) 73, 137, 318, 336
BssSI CACGAG 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 528
Bst2BI CACGAG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 153
Bst6I CTCTTC 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 270
BstDEI CTNAG 4 cut(s) 107, 125, 185, 354
BstDSI CCRYGG 1 cut(s) 528
BstKTI GATC 4 cut(s) 76, 140, 321, 339
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 4 cut(s) 73, 137, 318, 336
BstMCI CGRYCG 1 cut(s) 321
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 137, 336
BstYI RGATCY 2 cut(s) 137, 336
BsuI GTATCC 2 cut(s) 400, 540
BtgI CCRYGG 1 cut(s) 528
BtsIMutI CAGTG 1 cut(s) 401
CsiI ACCWGGT 1 cut(s) 232
Csp6I GTAC 1 cut(s) 271
CviAII CATG 3 cut(s) 274, 411, 529
CviJI RGCY 6 cut(s) 106, 217, 285, 314, 353, 521
CviKI_1 RGCY 6 cut(s) 106, 217, 285, 314, 353, 521
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 4 cut(s) 107, 125, 185, 354
DpnI GATC 4 cut(s) 75, 139, 320, 338
DpnII GATC 4 cut(s) 73, 137, 318, 336
DraI TTTAAA 1 cut(s) 169
DraIII CACNNNGTG 2 cut(s) 236, 516
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 3 cut(s) 277, 414, 532
FaiI YATR 9 cut(s) 51, 95, 206, 208, 242, 275, 282, 412, 530
FaqI GGGAC 1 cut(s) 556
FatI CATG 3 cut(s) 273, 410, 528
FauNDI CATATG 1 cut(s) 206
FspBI CTAG 3 cut(s) 62, 260, 311
Hin1II CATG 3 cut(s) 277, 414, 532
HinfI GANTC 1 cut(s) 420
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 3 cut(s) 142, 186, 376
Hpy188III TCNNGA 5 cut(s) 62, 118, 194, 255, 488
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 1 cut(s) 554
HpyF3I CTNAG 4 cut(s) 107, 125, 185, 354
HpySE526I ACGT 1 cut(s) 453
Hsp92II CATG 3 cut(s) 277, 414, 532
Kzo9I GATC 4 cut(s) 73, 137, 318, 336
LmnI GCTCC 1 cut(s) 103
MabI ACCWGGT 1 cut(s) 232
MaeI CTAG 3 cut(s) 62, 260, 311
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 3 cut(s) 12, 153, 558
MalI GATC 4 cut(s) 75, 139, 320, 338
MboI GATC 4 cut(s) 73, 137, 318, 336
MboII GAAGA 3 cut(s) 275, 389, 427
MfeI CAATTG 2 cut(s) 331, 344
MflI RGATCY 2 cut(s) 137, 336
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 5 cut(s) 96, 172, 266, 331, 344
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 6 cut(s) 283, 325, 343, 349, 427, 469
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 2 cut(s) 168, 578
MspR9I CCNGG 1 cut(s) 234
MunI CAATTG 2 cut(s) 331, 344
MvaI CCWGG 1 cut(s) 234
NcoI CCATGG 1 cut(s) 528
NdeI CATATG 1 cut(s) 206
NdeII GATC 4 cut(s) 73, 137, 318, 336
NlaIII CATG 3 cut(s) 277, 414, 532
NlaIV GGNNCC 1 cut(s) 139
NspI RCATGY 1 cut(s) 277
PciI ACATGT 1 cut(s) 273
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 1 cut(s) 420
PflMI CCANNNNNTGG 1 cut(s) 534
Ple19I CGATCG 1 cut(s) 321
PscI ACATGT 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 139
PsuI RGATCY 2 cut(s) 137, 336
PvuI CGATCG 1 cut(s) 321
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 168, 578
Sau3AI GATC 4 cut(s) 73, 137, 318, 336
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 510
SexAI ACCWGGT 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 5 cut(s) 96, 172, 266, 331, 344
SspMI CTAG 3 cut(s) 62, 260, 311
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 153
TaiI ACGT 1 cut(s) 456
TaqI TCGA 3 cut(s) 288, 317, 321
TasI AATT 5 cut(s) 96, 172, 266, 331, 344
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 1 cut(s) 420
Tru1I TTAA 2 cut(s) 168, 578
Tru9I TTAA 2 cut(s) 168, 578
TscAI CASTG 1 cut(s) 408
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 1 cut(s) 408
Van91I CCANNNNNTGG 1 cut(s) 534
XapI RAATTY 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 61
XceI RCATGY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 3 cut(s) 62, 260, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.