FvH4_2g17400

ADP binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000203
Physical Location & Seq
Reverse (-)
15009726 .. 15010718
993 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17400.t1

Sequence Viewer

Length: 993 bp
ATGGCTGTAAAGCTTGATAAGCTTATTACAGATGGAAATTTCACCACAATATCATGTCCTGCTCCTCCGCCGAAGCTTGACTATCCTGCCATACCATATTATGAGGATTCCACTCAGGCCCTGGTGAAGCCACATGAAGGGGCTAGCTCCTCCTCTAGAACATCCAAACCTGCTAAAGTACATGTGCCTATGGATCTCTCTGAGCGTCTTGAATACAGGCTGCCTTATACAAAGGATCTCTTGACGGCTCTGCAAGATGACAAGATCAGCATGATTGGCATTATTTCTGGGACATTCAGACAGAGAGATACGGTAACAACTAAAGAGTTCACCAAAAGAATGAAACACAGAAATCTCTTTGACGAGGTTGTGATGGCAGTTGTGTCTCAGCATCCAGACTTGAAACAAATACAAGATGAGATTGCAGAAATGCTGGACCTGAAATTAGAGGAGAATGGGAGTTTGGTGGAACGGGCAGAGAGGCTACGAGCTCTTTTACTGGCATCAGGTTCTAGGAGGATTCTTGTAATACTGACTGATGTCTGTGGAATACTTGATTTGGATGCAATTGGAATTCCTCATCTTGATATCATGAAAAGCTGCAAGATCATGTTGATTTCAGAACTACAAGATGTGTTTGGTGAAATGGGGACTCAGAGCAATTTCAGATTGATATTACATTCCACTCCCGTAGCAAGTGCTGTTGAGTTTGAGTCAAGAATTTCAGTCATCAGAGATGTAATGGATGCACTGACAGATGATGAATCCAATCCCATTGTAATATGTGGGATGGGGGGTATCGGGAAAACAACTTTGGTGATGGAGATTGGTGGAAAAGCAGGTGAAGTACAACTGTTTGATGAAATTGCAATTGCAGAGTTCATCCAAGAACCTGATCTCATCAAAATTCAAGGTCAAATTGCCAAAGCTCTGGGCCTGGAACTTACAGGAGAAGACGACAGAGCAGCTAAGTTACGTGAAAGATTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

331

Amino Acids

36.5

Weight (kDa)

5.04

Isoelectric Point (pI)

33.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 104 - 220 2e-10 NB-ARC domain
NB-ARC PF00931 244 - 321 4.6e-07 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 830
Acc36I ACCTGC 2 cut(s) 178, 830
AciI CCGC 1 cut(s) 68
AclWI GGATC 2 cut(s) 201, 243
AcsI RAATTY 4 cut(s) 37, 573, 720, 906
AfaI GTAC 2 cut(s) 180, 849
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 3 cut(s) 212, 403, 911
AjnI CCWGG 2 cut(s) 120, 936
AjuI GAANNNNNNNTTGG 4 cut(s) 446, 478, 797, 829
AluBI AGCT 8 cut(s) 13, 22, 76, 147, 491, 600, 929, 968
AluI AGCT 8 cut(s) 13, 22, 76, 147, 491, 600, 929, 968
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 390
AlwI GGATC 2 cut(s) 201, 243
AlwNI CAGNNNCTG 1 cut(s) 121
AoxI GGCC 2 cut(s) 117, 934
ApeKI GCWGC 3 cut(s) 220, 600, 965
ApoI RAATTY 4 cut(s) 37, 573, 720, 906
AspS9I GGNCC 3 cut(s) 118, 436, 934
AsuHPI GGTGA 6 cut(s) 34, 136, 322, 653, 829, 854
AsuNHI GCTAGC 1 cut(s) 143
AvaII GGWCC 1 cut(s) 436
BanII GRGCYC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 960
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 3 cut(s) 207, 587, 977
BccI CCATC 4 cut(s) 26, 367, 784, 814
BceAI ACGGC 1 cut(s) 261
BciT130I CCWGG 2 cut(s) 122, 938
BcoDI GTCTC 1 cut(s) 390
BfaI CTAG 3 cut(s) 144, 156, 513
BfuAI ACCTGC 2 cut(s) 178, 830
BisI GCNGC 3 cut(s) 221, 601, 966
BlsI GCNGC 3 cut(s) 222, 602, 967
Bme1390I CCNGG 2 cut(s) 122, 938
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 3 cut(s) 118, 436, 934
BmrFI CCNGG 2 cut(s) 122, 938
BmsI GCATC 4 cut(s) 400, 512, 553, 736
BmtI GCTAGC 1 cut(s) 147
BoxI GACNNNNGTC 1 cut(s) 539
BpiI GAAGAC 1 cut(s) 960
BsaAI YACGTR 1 cut(s) 977
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 504
BseBI CCWGG 2 cut(s) 122, 938
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 6 cut(s) 161, 391, 568, 751, 795, 882
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 4 cut(s) 128, 192, 401, 668
BseNI ACTGG 1 cut(s) 504
BseRI GAGGAG 4 cut(s) 54, 139, 142, 464
BseXI GCAGC 3 cut(s) 207, 587, 977
BshFI GGCC 2 cut(s) 119, 936
BsiHKAI GWGCWC 1 cut(s) 493
BslFI GGGAC 2 cut(s) 304, 664
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 390
BsmFI GGGAC 2 cut(s) 304, 664
BsnI GGCC 2 cut(s) 119, 936
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 5 cut(s) 193, 235, 264, 606, 895
BspACI CCGC 1 cut(s) 68
BspANI GGCC 2 cut(s) 119, 936
BspCNI CTCAG 4 cut(s) 127, 193, 400, 667
BspHI TCATGA 1 cut(s) 591
BspMI ACCTGC 2 cut(s) 178, 830
BspOI GCTAGC 1 cut(s) 147
BspPI GGATC 2 cut(s) 201, 243
BsrI ACTGG 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 5 cut(s) 193, 235, 264, 606, 895
Bst2UI CCWGG 2 cut(s) 122, 938
Bst4CI ACNGT 2 cut(s) 313, 855
BstBAI YACGTR 1 cut(s) 977
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 5 cut(s) 114, 201, 387, 654, 969
BstF5I GGATG 6 cut(s) 161, 391, 568, 751, 795, 882
BstKTI GATC 5 cut(s) 196, 238, 267, 609, 898
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 5 cut(s) 193, 235, 264, 606, 895
BstMWI GCNNNNNNNGC 2 cut(s) 19, 276
BstNI CCWGG 2 cut(s) 122, 938
BstNSI RCATGY 1 cut(s) 185
BstPAI GACNNNNGTC 1 cut(s) 539
BstSCI CCNGG 2 cut(s) 120, 936
BstV1I GCAGC 3 cut(s) 207, 587, 977
BstV2I GAAGAC 1 cut(s) 960
BstX2I RGATCY 2 cut(s) 193, 235
BstXI CCANNNNNNTGG 1 cut(s) 931
BstYI RGATCY 2 cut(s) 193, 235
BsuRI GGCC 2 cut(s) 119, 936
BtsCI GGATG 6 cut(s) 161, 391, 568, 751, 795, 882
BtsIMutI CAGTG 1 cut(s) 749
BveI ACCTGC 2 cut(s) 178, 830
Cac8I GCNNGC 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 121
CciI TCATGA 1 cut(s) 591
Cfr13I GGNCC 3 cut(s) 118, 436, 934
CseI GACGC 1 cut(s) 194
Csp6I GTAC 2 cut(s) 179, 848
CviAII CATG 6 cut(s) 54, 134, 182, 271, 592, 610
CviQI GTAC 2 cut(s) 179, 848
DdeI CTNAG 5 cut(s) 114, 201, 387, 654, 969
DpnI GATC 5 cut(s) 195, 237, 266, 608, 897
DpnII GATC 5 cut(s) 193, 235, 264, 606, 895
EciI GGCGGA 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 493
Eco32I GATATC 1 cut(s) 589
Eco47I GGWCC 1 cut(s) 436
Eco53kI GAGCTC 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 491
EcoO109I RGGNCCY 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 573
EcoRII CCWGG 2 cut(s) 120, 936
EcoRV GATATC 1 cut(s) 589
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 6 cut(s) 57, 137, 185, 274, 595, 613
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 2 cut(s) 304, 664
FatI CATG 6 cut(s) 53, 133, 181, 270, 591, 609
Fnu4HI GCNGC 3 cut(s) 221, 601, 966
FokI GGATG 6 cut(s) 148, 378, 575, 758, 802, 869
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 3 cut(s) 221, 601, 966
FspBI CTAG 3 cut(s) 144, 156, 513
GluI GCNGC 3 cut(s) 221, 601, 966
HaeIII GGCC 2 cut(s) 119, 936
HgaI GACGC 1 cut(s) 194
Hin1II CATG 6 cut(s) 57, 137, 185, 274, 595, 613
HindIII AAGCTT 3 cut(s) 11, 20, 74
HinfI GANTC 5 cut(s) 107, 520, 652, 713, 764
HphI GGTGA 6 cut(s) 34, 136, 322, 653, 829, 854
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 6 cut(s) 202, 299, 622, 657, 668, 734
Hpy188III TCNNGA 8 cut(s) 156, 209, 241, 395, 584, 592, 717, 802
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 2 cut(s) 313, 855
HpyCH4IV ACGT 1 cut(s) 976
HpyCH4V TGCA 7 cut(s) 253, 425, 566, 603, 749, 869, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 276
HpyF3I CTNAG 5 cut(s) 114, 201, 387, 654, 969
HpySE526I ACGT 1 cut(s) 976
Hsp92II CATG 6 cut(s) 57, 137, 185, 274, 595, 613
Kzo9I GATC 5 cut(s) 193, 235, 264, 606, 895
LmnI GCTCC 2 cut(s) 67, 152
Lsp1109I GCAGC 3 cut(s) 207, 587, 977
LweI GCATC 4 cut(s) 400, 512, 553, 736
MaeI CTAG 3 cut(s) 144, 156, 513
MaeII ACGT 1 cut(s) 976
MaeIII GTNAC 2 cut(s) 313, 972
MalI GATC 5 cut(s) 195, 237, 266, 608, 897
MboI GATC 5 cut(s) 193, 235, 264, 606, 895
MboII GAAGA 1 cut(s) 965
MfeI CAATTG 2 cut(s) 567, 870
MflI RGATCY 2 cut(s) 193, 235
MhlI GDGCHC 1 cut(s) 493
MlyI GAGTC 2 cut(s) 646, 722
MnlI CCTC 9 cut(s) 75, 97, 160, 163, 358, 442, 474, 510, 588
MspR9I CCNGG 2 cut(s) 122, 938
MunI CAATTG 2 cut(s) 567, 870
MvaI CCWGG 2 cut(s) 122, 938
MwoI GCNNNNNNNGC 2 cut(s) 19, 276
NdeII GATC 5 cut(s) 193, 235, 264, 606, 895
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 6 cut(s) 57, 137, 185, 274, 595, 613
NspI RCATGY 1 cut(s) 185
PagI TCATGA 1 cut(s) 591
PaqCI CACCTGC 1 cut(s) 830
PciI ACATGT 1 cut(s) 181
PfeI GAWTC 3 cut(s) 107, 520, 764
PkrI GCNGC 3 cut(s) 222, 602, 967
PleI GAGTC 2 cut(s) 646, 721
PpsI GAGTC 2 cut(s) 646, 721
Ppu21I YACGTR 1 cut(s) 977
PscI ACATGT 1 cut(s) 181
PshAI GACNNNNGTC 1 cut(s) 539
Psp124BI GAGCTC 1 cut(s) 493
Psp6I CCWGG 2 cut(s) 120, 936
PspGI CCWGG 2 cut(s) 120, 936
PspPI GGNCC 3 cut(s) 118, 436, 934
PstNI CAGNNNCTG 1 cut(s) 121
PsuI RGATCY 2 cut(s) 193, 235
RsaI GTAC 2 cut(s) 180, 849
RsaNI GTAC 2 cut(s) 179, 848
SacI GAGCTC 1 cut(s) 493
SatI GCNGC 3 cut(s) 221, 601, 966
Sau3AI GATC 5 cut(s) 193, 235, 264, 606, 895
Sau96I GGNCC 3 cut(s) 118, 436, 934
SchI GAGTC 2 cut(s) 646, 722
ScrFI CCNGG 2 cut(s) 122, 938
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 4 cut(s) 400, 512, 553, 736
SinI GGWCC 1 cut(s) 436
SsiI CCGC 1 cut(s) 68
SspMI CTAG 3 cut(s) 144, 156, 513
SstI GAGCTC 1 cut(s) 493
StyD4I CCNGG 2 cut(s) 120, 936
TaaI ACNGT 2 cut(s) 313, 855
TaiI ACGT 1 cut(s) 979
TatI WGTACW 2 cut(s) 178, 847
TfiI GAWTC 3 cut(s) 107, 520, 764
TscAI CASTG 1 cut(s) 756
TseI GCWGC 3 cut(s) 220, 600, 965
TspDTI ATGAA 6 cut(s) 150, 356, 608, 777, 871, 876
TspRI CASTG 1 cut(s) 756
VpaK11BI GGWCC 1 cut(s) 436
XapI RAATTY 4 cut(s) 37, 573, 720, 906
XbaI TCTAGA 1 cut(s) 155
XceI RCATGY 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 3 cut(s) 144, 156, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.