Rh7AG055000

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000203
Physical Location & Seq
Reverse (-)
3820726 .. 3821673
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG055000.1

Sequence Viewer

Length: 603 bp
ATGGTGAGCTGCCAACGCGGTCTCTCAAGGAAATACGTACGAAGTTCGAAAATAGAATGCTGCTCCTCCTTGGAAGGGATTTTTGCCTTTGAAGATGATGAAAAGATGTTCAACTTCCAAAGTCTGACAGAATTGACTCTCTCAACACTACCAAGCTTCACTGGGATAAGCAAATATATCTCTAATGGGTCGGAACGGCTACTAGAAGACATAAGCCCAGAACAATCTGACATCATCATACAACCTCTGTTCGATACAAAGGTTCATTTCCCAGTCTTGACAAAACTATACATTATCTCCTTGAACCAAAGAGAGATATGGAACAGCTCTGCAGAATCCTTCTGTGAACTAAAATCTTTATGGGTGACCGAATGTCACAAACTATTGCGTTTGGTACCAACACATATGCAAAATAGATTGCAGAAATTGGAGTGCATACACACATCGTACTGTTCTTCTCTGGAAGAGATTTTTGAATTTAGAAGATTGACTGTCGATGATGAAGGGGATGCTGCTGCTTTAACAATTTCTGAGTCAAGGAATCAATCTCGTCAAGCATTTCAGAATCTTAGAGAGATATCAATTTTTCTTGTGAAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

200

Amino Acids

23.08

Weight (kDa)

5.47

Isoelectric Point (pI)

62.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 96 - 168 5.2e-13 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 394
AccII CGCG 1 cut(s) 18
AciI CCGC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 476
AfaI GTAC 3 cut(s) 39, 396, 449
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 4 cut(s) 92, 112, 304, 476
AhdI GACNNNNNGTC 1 cut(s) 372
AluBI AGCT 3 cut(s) 9, 156, 327
AluI AGCT 3 cut(s) 9, 156, 327
Alw26I GTCTC 1 cut(s) 26
ApeKI GCWGC 4 cut(s) 9, 60, 512, 515
ApoI RAATTY 1 cut(s) 476
Asp718I GGTACC 1 cut(s) 394
AsuHPI GGTGA 2 cut(s) 16, 376
AsuII TTCGAA 1 cut(s) 47
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BanI GGYRCC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 3 cut(s) 47, 499, 502
BceAI ACGGC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 4 cut(s) 10, 61, 513, 516
BlsI GCNGC 4 cut(s) 11, 62, 514, 517
BmeRI GACNNNNNGTC 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 396
BmrI ACTGGG 2 cut(s) 171, 266
BmsI GCATC 1 cut(s) 499
BmuI ACTGGG 2 cut(s) 171, 266
BpiI GAAGAC 1 cut(s) 213
Bpu14I TTCGAA 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 10
BsaAI YACGTR 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 166, 272
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 2 cut(s) 166, 272
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 3 cut(s) 47, 499, 502
Bsh1236I CGCG 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 394
BsiWI CGTACG 1 cut(s) 37
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 62
Bso31I GGTCTC 1 cut(s) 26
Bsp119I TTCGAA 1 cut(s) 47
BspACI CCGC 1 cut(s) 18
BspCNI CTCAG 1 cut(s) 523
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 334
BspT104I TTCGAA 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 26
BsrI ACTGG 2 cut(s) 166, 272
BssECI CCNNGG 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 452, 493
Bst6I CTCTTC 1 cut(s) 459
BstBAI YACGTR 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 531, 569
BstEII GGTNACC 1 cut(s) 364
BstF5I GGATG 1 cut(s) 514
BstFNI CGCG 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstPI GGTNACC 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 330
BstSNI TACGTA 1 cut(s) 37
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 47, 499, 502
BstV2I GAAGAC 1 cut(s) 213
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 159
Csp6I GTAC 3 cut(s) 38, 395, 448
CviJI RGCY 5 cut(s) 9, 156, 199, 216, 327
CviKI_1 RGCY 5 cut(s) 9, 156, 199, 216, 327
CviQI GTAC 3 cut(s) 38, 395, 448
DdeI CTNAG 2 cut(s) 531, 569
DriI GACNNNNNGTC 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 459
Eam1105I GACNNNNNGTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 459
Eco105I TACGTA 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 579
Eco91I GGTNACC 1 cut(s) 364
EcoO65I GGTNACC 1 cut(s) 364
EcoRV GATATC 1 cut(s) 579
EcoT14I CCWWGG 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 69
FaiI YATR 9 cut(s) 177, 212, 239, 289, 319, 361, 405, 407, 437
FauNDI CATATG 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 10, 61, 513, 516
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 4 cut(s) 10, 61, 513, 516
FspBI CTAG 1 cut(s) 203
GluI GCNGC 4 cut(s) 10, 61, 513, 516
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 5 cut(s) 136, 335, 533, 541, 565
HphI GGTGA 2 cut(s) 16, 376
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 5 cut(s) 126, 193, 229, 532, 564
Hpy188III TCNNGA 2 cut(s) 277, 461
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 3 cut(s) 68, 349, 497
HpyCH4III ACNGT 2 cut(s) 452, 493
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 4 cut(s) 332, 409, 421, 435
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 531, 569
HpySE526I ACGT 1 cut(s) 36
KpnI GGTACC 1 cut(s) 398
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 4 cut(s) 147, 231, 285, 446
Lsp1109I GCAGC 3 cut(s) 47, 499, 502
LweI GCATC 1 cut(s) 499
MaeI CTAG 1 cut(s) 203
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 364, 374
MboII GAAGA 5 cut(s) 104, 218, 447, 476, 495
MluCI AATT 5 cut(s) 131, 425, 476, 525, 582
MlyI GAGTC 2 cut(s) 130, 542
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 2 cut(s) 76, 255
MseI TTAA 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 62
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeI CATATG 1 cut(s) 405
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 2 cut(s) 364, 374
NspV TTCGAA 1 cut(s) 47
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 3 cut(s) 335, 541, 565
Pfl23II CGTACG 1 cut(s) 37
PkrI GCNGC 4 cut(s) 11, 62, 514, 517
PleI GAGTC 2 cut(s) 130, 541
PpsI GAGTC 2 cut(s) 130, 541
Ppu21I YACGTR 1 cut(s) 37
PspEI GGTNACC 1 cut(s) 364
PspLI CGTACG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 396
PstI CTGCAG 1 cut(s) 334
RsaI GTAC 3 cut(s) 39, 396, 449
RsaNI GTAC 3 cut(s) 38, 395, 448
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 4 cut(s) 10, 61, 513, 516
SchI GAGTC 2 cut(s) 130, 542
SetI ASST 6 cut(s) 11, 39, 158, 247, 264, 329
SfaNI GCATC 1 cut(s) 499
SfcI CTRYAG 1 cut(s) 330
SfuI TTCGAA 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
SnaBI TACGTA 1 cut(s) 37
Sse9I AATT 5 cut(s) 131, 425, 476, 525, 582
SsiI CCGC 1 cut(s) 18
SspMI CTAG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 452, 493
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 47, 252, 495
TaqII GACCGA 1 cut(s) 383
TasI AATT 5 cut(s) 131, 425, 476, 525, 582
TfiI GAWTC 3 cut(s) 335, 541, 565
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 364, 374
TseI GCWGC 4 cut(s) 9, 60, 512, 515
Tsp45I GTSAC 2 cut(s) 364, 374
TspDTI ATGAA 3 cut(s) 114, 254, 516
TspRI CASTG 1 cut(s) 166
XapI RAATTY 1 cut(s) 476
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.