Rmu_sc0030824.1_g000001

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030824.1
OG0000203
Physical Location & Seq
Forward (+)
1 .. 1169
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030824.1_g000001.1.cds

Sequence Viewer

Length: 609 bp
gttcattttccagtcttaagaagtctaacaattgggggttgtgatagtttgagaactctgttctccccttcaatcgccagaggtcttgtgaagctcgaaacactaacgatcgttggctgcgagaagattgaagagatagtagcagcagcagagggtgatgaagaaacagaggatgataacatcttccctcagctaaccgtattgtatcttgaaaatctacccaatctcagaagcttttcgcaaggcaaatgtaatttcaaatggccgctagtggaatttataagaatcagcggatgctgcaatatgaagaagttttgtttcggatccgtcagcataccaaggaaagtgacgttggatgttggtgagaatgttttgcaggagctgaagaacaggacgcctgcttctccttcttcaaaatcacgactcaccaaccggagtgtagacattgcccaccaggtgttcgatgaaatggcgcttagggactacttcaactctcatggatgggccatcatgatagttgcttatgcccaaaatgccaattcattccccagaggccttgccgcaccaacaccaataccatgtcagtatccaatttcttcttttacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

202

Amino Acids

22.45

Weight (kDa)

6.35

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AccI GTMKAC 1 cut(s) 441
AciI CCGC 3 cut(s) 266, 291, 561
AclWI GGATC 2 cut(s) 318, 331
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 395
AdeI CACNNNGTG 1 cut(s) 457
AflII CTTAAG 1 cut(s) 16
AgsI TTSAA 6 cut(s) 72, 131, 212, 259, 414, 490
AjnI CCWGG 1 cut(s) 453
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
AluBI AGCT 4 cut(s) 94, 193, 234, 382
AluI AGCT 4 cut(s) 94, 193, 234, 382
AlwI GGATC 2 cut(s) 318, 331
AlwNI CAGNNNCTG 1 cut(s) 382
AoxI GGCC 3 cut(s) 263, 504, 553
ApeKI GCWGC 4 cut(s) 117, 143, 146, 297
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 235
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 504
AsuHPI GGTGA 3 cut(s) 167, 374, 418
BamHI GGATCC 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 4 cut(s) 104, 155, 158, 284
BccI CCATC 2 cut(s) 495, 515
BciT130I CCWGG 1 cut(s) 455
BciVI GTATCC 1 cut(s) 597
BfaI CTAG 1 cut(s) 269
BfoI RGCGCY 1 cut(s) 476
BfrI CTTAAG 1 cut(s) 16
BfuI GTATCC 1 cut(s) 597
BisI GCNGC 6 cut(s) 118, 144, 147, 266, 298, 561
BlsI GCNGC 6 cut(s) 119, 145, 148, 267, 299, 562
Bme1390I CCNGG 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 1 cut(s) 284
Bpu10I CCTNAGC 2 cut(s) 189, 476
BsaHI GRCGYC 1 cut(s) 395
BsaJI CCNNGG 1 cut(s) 338
BsaWI WCCGGW 1 cut(s) 432
Bse1I ACTGG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 4 cut(s) 178, 299, 361, 506
BseMI GCAATG 1 cut(s) 444
BseMII CTCAG 2 cut(s) 203, 241
BseNI ACTGG 1 cut(s) 11
BseXI GCAGC 4 cut(s) 104, 155, 158, 284
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 265, 506, 555
BsiEI CGRYCG 1 cut(s) 111
BsiSI CCGG 1 cut(s) 433
BslFI GGGAC 1 cut(s) 494
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 3 cut(s) 265, 506, 555
Bsp143I GATC 2 cut(s) 108, 323
BspACI CCGC 3 cut(s) 266, 291, 561
BspANI GGCC 3 cut(s) 265, 506, 555
BspCNI CTCAG 2 cut(s) 202, 240
BspHI TCATGA 1 cut(s) 510
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 2 cut(s) 318, 331
BspTI CTTAAG 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 2 cut(s) 108, 323
BssNI GRCGYC 1 cut(s) 395
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 126
BstACI GRCGYC 1 cut(s) 395
BstAFI CTTAAG 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 189, 227, 476
BstF5I GGATG 4 cut(s) 178, 299, 361, 506
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 2 cut(s) 111, 326
BstMBI GATC 2 cut(s) 108, 323
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 2 cut(s) 297, 533
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 453
BstV1I GCAGC 4 cut(s) 104, 155, 158, 284
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BsuI GTATCC 1 cut(s) 597
BsuRI GGCC 3 cut(s) 265, 506, 555
BtsCI GGATG 4 cut(s) 178, 299, 361, 506
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 382
CciI TCATGA 1 cut(s) 510
CfoI GCGC 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 504
CseI GACGC 1 cut(s) 403
CsiI ACCWGGT 1 cut(s) 453
CviAII CATG 3 cut(s) 497, 511, 579
CviJI RGCY 8 cut(s) 94, 117, 193, 234, 265, 382, 506, 555
CviKI_1 RGCY 8 cut(s) 94, 117, 193, 234, 265, 382, 506, 555
DdeI CTNAG 3 cut(s) 189, 227, 476
DpnI GATC 2 cut(s) 110, 325
DpnII GATC 2 cut(s) 108, 323
DraIII CACNNNGTG 1 cut(s) 457
EaeI YGGCCR 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 338
Eco147I AGGCCT 1 cut(s) 555
Eco57I CTGAAG 1 cut(s) 404
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 1 cut(s) 338
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 3 cut(s) 500, 514, 582
FaiI YATR 7 cut(s) 281, 305, 335, 498, 512, 525, 580
FaqI GGGAC 1 cut(s) 494
FatI CATG 3 cut(s) 496, 510, 578
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 6 cut(s) 118, 144, 147, 266, 298, 561
FokI GGATG 4 cut(s) 185, 306, 368, 513
Fsp4HI GCNGC 6 cut(s) 118, 144, 147, 266, 298, 561
FspBI CTAG 1 cut(s) 269
GlaI GCGC 1 cut(s) 474
GluI GCNGC 6 cut(s) 118, 144, 147, 266, 298, 561
HaeII RGCGCY 1 cut(s) 476
HaeIII GGCC 3 cut(s) 265, 506, 555
HapII CCGG 1 cut(s) 433
HgaI GACGC 1 cut(s) 403
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 3 cut(s) 500, 514, 582
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 2 cut(s) 285, 423
HpaII CCGG 1 cut(s) 433
HphI GGTGA 3 cut(s) 167, 374, 418
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 2 cut(s) 230, 323
Hpy188III TCNNGA 3 cut(s) 209, 420, 511
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 2 cut(s) 78, 417
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 2 cut(s) 300, 376
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 533
HpyF3I CTNAG 3 cut(s) 189, 227, 476
HpySE526I ACGT 1 cut(s) 350
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 3 cut(s) 500, 514, 582
HspAI GCGC 1 cut(s) 473
Kzo9I GATC 2 cut(s) 108, 323
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 9 cut(s) 24, 91, 362, 376, 411, 440, 446, 467, 562
Lsp1109I GCAGC 4 cut(s) 104, 155, 158, 284
LweI GCATC 1 cut(s) 284
MabI ACCWGGT 1 cut(s) 453
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 1 cut(s) 346
MalI GATC 2 cut(s) 110, 325
MboI GATC 2 cut(s) 108, 323
MboII GAAGA 8 cut(s) 136, 143, 173, 175, 319, 397, 402, 588
MfeI CAATTG 1 cut(s) 30
MflI RGATCY 1 cut(s) 323
MluCI AATT 5 cut(s) 30, 253, 275, 538, 591
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 5 cut(s) 74, 145, 163, 198, 545
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 1 cut(s) 17
MspA1I CMGCKG 1 cut(s) 291
MspCI CTTAAG 1 cut(s) 16
MspI CCGG 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 455
MunI CAATTG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 297, 533
NdeII GATC 2 cut(s) 108, 323
NlaIII CATG 3 cut(s) 500, 514, 582
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 346
PagI TCATGA 1 cut(s) 510
PceI AGGCCT 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 6 cut(s) 119, 145, 148, 267, 299, 562
Ple19I CGATCG 1 cut(s) 111
PleI GAGTC 1 cut(s) 417
PpsI GAGTC 1 cut(s) 417
PsiI TTATAA 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 1 cut(s) 504
PstNI CAGNNNCTG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 323
PvuI CGATCG 1 cut(s) 111
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 6 cut(s) 118, 144, 147, 266, 298, 561
Sau3AI GATC 2 cut(s) 108, 323
Sau96I GGNCC 1 cut(s) 504
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 1 cut(s) 455
SetI ASST 7 cut(s) 85, 96, 195, 236, 353, 384, 459
SexAI ACCWGGT 1 cut(s) 453
SfaNI GCATC 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 5 cut(s) 30, 253, 275, 538, 591
SseBI AGGCCT 1 cut(s) 555
SsiI CCGC 3 cut(s) 266, 291, 561
SspMI CTAG 1 cut(s) 269
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 353
TaqI TCGA 2 cut(s) 96, 462
TasI AATT 5 cut(s) 30, 253, 275, 538, 591
TauI GCSGC 2 cut(s) 268, 563
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 4 cut(s) 117, 143, 146, 297
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 4 cut(s) 174, 320, 480, 531
TspGWI ACGGA 1 cut(s) 316
Vha464I CTTAAG 1 cut(s) 16
XapI RAATTY 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.