Rmu_sc0024112.1_g000001

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024112.1
OG0000203
Physical Location & Seq
Forward (+)
1 .. 736
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024112.1_g000001.1.cds

Sequence Viewer

Length: 736 bp
cttgagacttgaagatcttggcgcagactgctctcttctggaagtctctgtgttgctaaagacaactcattttctacacctaggaaatgaaactttggcccaccctttcaatgtagtagatgcagagtgcggtggaaacttgaagggtcttacggtcacacactgtgatgctctggaatatctcgttgacttgacacgtgctgaaactactcctgtagtctttcctgtcttggcttcactgaagatctatggtgcacagaggctgaaggagatttttcatggattactgccagtggggtcgcttaaatcactacgacgtttaatcatagacagggcggatgaattaaggcatgtttggaagacagaaagccagtttgaccgcctggaaagtctaacattaaccgattgccaatcgttgcaagttattgttgcttggcaagaatcgggacatcatcatgaggaagaagccaaggagatcaacttccctaatttgacacagttggaacttgcagaactaccaagcctcgttgggatatgtagcaaaaaagtctgcaagctcaacttctctaaattgttagatttacaactcagaacgcttccgcgattcagtggtcagtggttgaatggtttggctccaacaagaaactctaatgacgtcgatatacaacatctattcgaccccaaggtactttttttgttttttgccctttcttttccggtaaaattgcatttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

244

Amino Acids

27.54

Weight (kDa)

5.99

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 658
AccII CGCG 1 cut(s) 602
AciI CCGC 4 cut(s) 130, 336, 380, 600
AcuI CTGAAG 2 cut(s) 261, 285
AcvI CACGTG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 655
AdeI CACNNNGTG 1 cut(s) 165
AfaI GTAC 1 cut(s) 688
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 4 cut(s) 12, 110, 143, 623
AjnI CCWGG 1 cut(s) 382
AluBI AGCT 1 cut(s) 557
AluI AGCT 1 cut(s) 557
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 50
Alw44I GTGCAC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 97
ApaLI GTGCAC 1 cut(s) 253
AspA2I CCTAGG 1 cut(s) 80
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 98
AvrII CCTAGG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 257
BbrPI CACGTG 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 257
BciT130I CCWGG 1 cut(s) 384
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 214
BglII AGATCT 2 cut(s) 14, 244
BlnI CCTAGG 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 634
BmrFI CCNGG 1 cut(s) 384
BmsI GCATC 2 cut(s) 110, 158
BpiI GAAGAC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 655
BsaJI CCNNGG 3 cut(s) 80, 469, 682
BsaWI WCCGGW 1 cut(s) 716
Bse1I ACTGG 2 cut(s) 291, 371
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 3 cut(s) 80, 469, 682
BseGI GGATG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 2 cut(s) 291, 371
BseSI GKGCMC 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 602
BshFI GGCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 717
BslFI GGGAC 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 3 cut(s) 14, 244, 475
BspACI CCGC 4 cut(s) 130, 336, 380, 600
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 601
BspFNI CGCG 1 cut(s) 602
BspHI TCATGA 1 cut(s) 455
BspLI GGNNCC 1 cut(s) 634
BsrI ACTGG 2 cut(s) 291, 371
BssECI CCNNGG 3 cut(s) 80, 469, 682
BssMI GATC 3 cut(s) 14, 244, 475
BssNI GRCGYC 1 cut(s) 655
BssT1I CCWWGG 3 cut(s) 80, 469, 682
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 3 cut(s) 155, 165, 499
Bst6I CTCTTC 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 655
BstBAI YACGTR 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 1 cut(s) 588
BstF5I GGATG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 602
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 3 cut(s) 17, 247, 478
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 3 cut(s) 14, 244, 475
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 257
BstUI CGCG 1 cut(s) 602
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 2 cut(s) 14, 244
BstYI RGATCY 2 cut(s) 14, 244
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 1 cut(s) 344
BtsIMutI CAGTG 5 cut(s) 161, 237, 298, 614, 621
Cac8I GCNNGC 1 cut(s) 555
CaiI CAGNNNCTG 1 cut(s) 263
CciI TCATGA 1 cut(s) 455
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 687
CviAII CATG 3 cut(s) 279, 351, 456
CviJI RGCY 8 cut(s) 99, 234, 263, 370, 468, 523, 557, 633
CviKI_1 RGCY 8 cut(s) 99, 234, 263, 370, 468, 523, 557, 633
CviQI GTAC 1 cut(s) 687
DdeI CTNAG 1 cut(s) 588
DpnI GATC 3 cut(s) 16, 246, 477
DpnII GATC 3 cut(s) 14, 244, 475
DraIII CACNNNGTG 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
EciI GGCGGA 1 cut(s) 351
Eco130I CCWWGG 3 cut(s) 80, 469, 682
Eco57I CTGAAG 2 cut(s) 261, 285
Eco72I CACGTG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 382
EcoT14I CCWWGG 3 cut(s) 80, 469, 682
ErhI CCWWGG 3 cut(s) 80, 469, 682
FaeI CATG 3 cut(s) 282, 354, 459
FaiI YATR 7 cut(s) 250, 280, 327, 352, 457, 536, 663
FalI AAGNNNNNCTT 2 cut(s) 546, 578
FaqI GGGAC 1 cut(s) 460
FatI CATG 3 cut(s) 278, 350, 455
FokI GGATG 1 cut(s) 351
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 23
HaeIII GGCC 1 cut(s) 99
HapII CCGG 1 cut(s) 717
HhaI GCGC 1 cut(s) 24
Hin1I GRCGYC 1 cut(s) 655
Hin1II CATG 3 cut(s) 282, 354, 459
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 188
HindII GTYRAC 1 cut(s) 188
HinfI GANTC 2 cut(s) 441, 604
HpaII CCGG 1 cut(s) 717
Hpy166II GTNNAC 2 cut(s) 188, 255
Hpy188I TCNGA 2 cut(s) 591, 735
Hpy188III TCNNGA 4 cut(s) 39, 174, 445, 456
Hpy8I GTNNAC 2 cut(s) 188, 255
Hpy99I CGWCG 2 cut(s) 319, 660
HpyAV CCTTC 2 cut(s) 137, 260
HpyCH4III ACNGT 3 cut(s) 155, 165, 499
HpyCH4IV ACGT 3 cut(s) 197, 317, 655
HpyCH4V TGCA 6 cut(s) 123, 255, 419, 510, 553, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 3 cut(s) 197, 317, 655
Hsp92I GRCGYC 1 cut(s) 655
Hsp92II CATG 3 cut(s) 282, 354, 459
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 14, 244, 475
LmnI GCTCC 1 cut(s) 638
LweI GCATC 2 cut(s) 110, 158
MaeI CTAG 1 cut(s) 81
MaeII ACGT 3 cut(s) 197, 317, 655
MaeIII GTNAC 1 cut(s) 155
MalI GATC 3 cut(s) 16, 246, 477
MboI GATC 3 cut(s) 14, 244, 475
MboII GAAGA 5 cut(s) 24, 27, 254, 371, 474
MflI RGATCY 2 cut(s) 14, 244
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 4 cut(s) 342, 488, 570, 723
MmeI TCCRAC 2 cut(s) 481, 660
MnlI CCTC 3 cut(s) 253, 452, 534
MseI TTAA 4 cut(s) 304, 321, 345, 399
MslI CAYNNNNRTG 2 cut(s) 166, 454
MspI CCGG 1 cut(s) 717
MspR9I CCNGG 1 cut(s) 384
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 1 cut(s) 602
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 3 cut(s) 14, 244, 475
NlaIII CATG 3 cut(s) 282, 354, 459
NlaIV GGNNCC 1 cut(s) 634
NmuCI GTSAC 1 cut(s) 155
NspI RCATGY 1 cut(s) 354
PagI TCATGA 1 cut(s) 455
PfeI GAWTC 2 cut(s) 441, 604
PmaCI CACGTG 1 cut(s) 198
PmlI CACGTG 1 cut(s) 198
Ppu21I YACGTR 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 382
PspCI CACGTG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 634
PspPI GGNCC 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 2 cut(s) 14, 244
RsaI GTAC 1 cut(s) 688
RsaNI GTAC 1 cut(s) 687
RseI CAYNNNNRTG 2 cut(s) 166, 454
SaqAI TTAA 4 cut(s) 304, 321, 345, 399
Sau3AI GATC 3 cut(s) 14, 244, 475
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 384
SduI GDGCHC 1 cut(s) 257
SetI ASST 6 cut(s) 82, 200, 320, 559, 658, 688
SfaNI GCATC 2 cut(s) 110, 158
SfcI CTRYAG 1 cut(s) 214
SmiMI CAYNNNNRTG 2 cut(s) 166, 454
SmlI CTYRAG 1 cut(s) 2
SmoI CTYRAG 1 cut(s) 2
Sse9I AATT 4 cut(s) 342, 488, 570, 723
SsiI CCGC 4 cut(s) 130, 336, 380, 600
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 382
StyI CCWWGG 3 cut(s) 80, 469, 682
TaaI ACNGT 3 cut(s) 155, 165, 499
TaiI ACGT 3 cut(s) 200, 320, 658
TaqI TCGA 2 cut(s) 658, 676
TasI AATT 4 cut(s) 342, 488, 570, 723
TfiI GAWTC 2 cut(s) 441, 604
Tru1I TTAA 4 cut(s) 304, 321, 345, 399
Tru9I TTAA 4 cut(s) 304, 321, 345, 399
TscAI CASTG 5 cut(s) 168, 244, 298, 614, 621
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 103, 267, 355
TspRI CASTG 5 cut(s) 168, 244, 298, 614, 621
VneI GTGCAC 1 cut(s) 253
XceI RCATGY 1 cut(s) 354
XmaJI CCTAGG 1 cut(s) 80
XspI CTAG 1 cut(s) 81
ZraI GACGTC 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.