RchiOBHm_Chr5g0080761

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000203
Physical Location & Seq
Reverse (-)
86749896 .. 86750447
552 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35504

Sequence Viewer

Length: 552 bp
ATGCAAAAGAGATTGCAGAGATTGGAGACCATAACTGTAGTCAACTGTTCTTCACTGGAAGGGATTTTTGAAGTCGGAAGATCGACCGTCAATGAAGGGATGCAAATAAATGATACCAAGGATTTCAAACAATCTTGTCAAGGCTTTCAGAATTTAACCGAACTAGTAGTTAGATCTTGTGGCAGTTTGAGATACCTTCTCACTCCTTCGATTTTCAGAGGTCTTGTCAAGCTCCGAAGTCTATCTATAAGATCTTGCAAGAAGATCGAAGCAATAGTCGCAGCAGATGAGGGTGAAGAAACAGAGAATGAAAGCATGCTCCCTCAGCTATATTATTTGTCTCTTTTAGATCTACCCAATCTTGAAAGCTTTTCGCAAGGCAAATATAATTTTGATTGGCCACTAGTGCAAGGGATCAGTATTTTGAATTGCAACAAAATGAACGCCTTTTGTTCAGGATCCCTCAGCATCCGAAGGAAAGTGAGCATATATGTCTCTCACTCTAGTGAGAATCTTAAGCAGGAGCTGAATGAAAGCAAGAAAAAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

183

Amino Acids

20.7

Weight (kDa)

8.51

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 47 - 149 5.5e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 422, 453, 466
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 151
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 4 cut(s) 71, 127, 365, 427
AhlI ACTAGT 2 cut(s) 163, 403
AleI CACNNNNGTG 1 cut(s) 504
AluBI AGCT 5 cut(s) 232, 328, 369, 526, 549
AluI AGCT 5 cut(s) 232, 328, 369, 526, 549
Alw26I GTCTC 3 cut(s) 20, 345, 499
AlwI GGATC 3 cut(s) 422, 453, 466
AlwNI CAGNNNCTG 1 cut(s) 526
AoxI GGCC 1 cut(s) 398
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 151
ArsI GACNNNNNNTTYG 2 cut(s) 261, 293
AsuHPI GGTGA 1 cut(s) 305
BalI TGGCCA 1 cut(s) 400
BamHI GGATCC 1 cut(s) 458
BbvCI CCTCAGC 2 cut(s) 324, 464
BbvI GCAGC 1 cut(s) 293
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BcoDI GTCTC 3 cut(s) 20, 345, 499
BcuI ACTAGT 2 cut(s) 163, 403
BfaI CTAG 3 cut(s) 164, 404, 504
BfmI CTRYAG 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 515
BglII AGATCT 3 cut(s) 173, 251, 349
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 460
BmsI GCATC 2 cut(s) 90, 477
Bpu10I CCTNAGC 2 cut(s) 324, 464
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 2 cut(s) 105, 468
BseMII CTCAG 2 cut(s) 338, 478
BseNI ACTGG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 293
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 1 cut(s) 400
BsiEI CGRYCG 1 cut(s) 87
BsmAI GTCTC 3 cut(s) 20, 345, 499
BsnI GGCC 1 cut(s) 400
Bso31I GGTCTC 1 cut(s) 20
Bsp143I GATC 7 cut(s) 80, 173, 251, 264, 349, 414, 458
BspANI GGCC 1 cut(s) 400
BspCNI CTCAG 2 cut(s) 337, 477
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 3 cut(s) 422, 453, 466
BspTI CTTAAG 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 7 cut(s) 80, 173, 251, 264, 349, 414, 458
BssT1I CCWWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 37, 47, 88
BstAFI CTTAAG 1 cut(s) 515
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 324, 464
BstF5I GGATG 2 cut(s) 105, 468
BstKTI GATC 7 cut(s) 83, 176, 254, 267, 352, 417, 461
BstMAI GTCTC 3 cut(s) 20, 345, 499
BstMBI GATC 7 cut(s) 80, 173, 251, 264, 349, 414, 458
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 3 cut(s) 278, 325, 406
BstNSI RCATGY 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 1 cut(s) 293
BstX2I RGATCY 4 cut(s) 173, 251, 349, 458
BstYI RGATCY 4 cut(s) 173, 251, 349, 458
BsuRI GGCC 1 cut(s) 400
BtsCI GGATG 2 cut(s) 105, 468
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 317
CaiI CAGNNNCTG 1 cut(s) 526
CviAII CATG 1 cut(s) 316
CviJI RGCY 7 cut(s) 144, 232, 328, 369, 400, 526, 549
CviKI_1 RGCY 7 cut(s) 144, 232, 328, 369, 400, 526, 549
DdeI CTNAG 2 cut(s) 324, 464
DpnI GATC 7 cut(s) 82, 175, 253, 266, 351, 416, 460
DpnII GATC 7 cut(s) 80, 173, 251, 264, 349, 414, 458
EaeI YGGCCR 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 319
FaiI YATR 8 cut(s) 32, 248, 317, 331, 387, 488, 490, 492
FatI CATG 1 cut(s) 315
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 2 cut(s) 112, 455
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 3 cut(s) 164, 404, 504
GluI GCNGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 400
Hin1II CATG 1 cut(s) 319
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 1 cut(s) 511
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 5 cut(s) 77, 150, 218, 236, 473
Hpy188III TCNNGA 2 cut(s) 362, 456
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 5 cut(s) 53, 89, 206, 216, 468
HpyCH4III ACNGT 3 cut(s) 37, 47, 88
HpyCH4V TGCA 6 cut(s) 4, 16, 103, 258, 409, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 325, 406
HpyF3I CTNAG 2 cut(s) 324, 464
Hsp92II CATG 1 cut(s) 319
Kzo9I GATC 7 cut(s) 80, 173, 251, 264, 349, 414, 458
LmnI GCTCC 3 cut(s) 237, 324, 523
LpnPI CCDG 3 cut(s) 41, 441, 506
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 2 cut(s) 90, 477
MaeI CTAG 3 cut(s) 164, 404, 504
MalI GATC 7 cut(s) 82, 175, 253, 266, 351, 416, 460
MboI GATC 7 cut(s) 80, 173, 251, 264, 349, 414, 458
MboII GAAGA 4 cut(s) 42, 90, 274, 308
MflI RGATCY 4 cut(s) 173, 251, 349, 458
MlsI TGGCCA 1 cut(s) 400
MluCI AATT 3 cut(s) 151, 388, 427
MluNI TGGCCA 1 cut(s) 400
MmeI TCCRAC 1 cut(s) 55
MnlI CCTC 4 cut(s) 212, 283, 333, 473
Mox20I TGGCCA 1 cut(s) 400
MscI TGGCCA 1 cut(s) 400
MseI TTAA 2 cut(s) 155, 516
MslI CAYNNNNRTG 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 400
MspCI CTTAAG 1 cut(s) 515
MwoI GCNNNNNNNGC 3 cut(s) 278, 325, 406
NdeII GATC 7 cut(s) 80, 173, 251, 264, 349, 414, 458
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 460
NspI RCATGY 1 cut(s) 319
OliI CACNNNNGTG 1 cut(s) 504
PaeI GCATGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 511
PkrI GCNGC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 460
PstNI CAGNNNCTG 1 cut(s) 526
PsuI RGATCY 4 cut(s) 173, 251, 349, 458
RseI CAYNNNNRTG 1 cut(s) 504
SaqAI TTAA 2 cut(s) 155, 516
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 7 cut(s) 80, 173, 251, 264, 349, 414, 458
SetI ASST 7 cut(s) 198, 223, 234, 330, 371, 528, 551
SfaNI GCATC 2 cut(s) 90, 477
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 504
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
SpeI ACTAGT 2 cut(s) 163, 403
SphI GCATGC 1 cut(s) 319
Sse9I AATT 3 cut(s) 151, 388, 427
SspMI CTAG 3 cut(s) 164, 404, 504
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 37, 47, 88
TaqI TCGA 3 cut(s) 83, 209, 267
TasI AATT 3 cut(s) 151, 388, 427
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 2 cut(s) 155, 516
Tru9I TTAA 2 cut(s) 155, 516
TscAI CASTG 1 cut(s) 60
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 4 cut(s) 108, 324, 455, 546
TspRI CASTG 1 cut(s) 60
Vha464I CTTAAG 1 cut(s) 515
XapI RAATTY 1 cut(s) 151
XceI RCATGY 1 cut(s) 319
XspI CTAG 3 cut(s) 164, 404, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.