Rh5CG440800

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000203
Physical Location & Seq
Reverse (-)
61177638 .. 61177991
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG440800.1

Sequence Viewer

Length: 354 bp
ATGTATAATTGGGAACTAAAGCATAATGACAACTACTTGGGAGTTCACGATCTTGATGCAAGCGCTGCTGTGGGTAGTGGAATCACTTTGTTGCTAAAGAAAACCAGCATTCTTGAGTTTAGAATGAAGAATATGACCAAACCTCAAGCTCTGAATGTCTTAGATACAGATCAGTACCATTTCGCAAAGATGAAGTCCCTTACACTAAAGGAGTGTGAAGCTGTGAAGTATCTGATTGACAGGACACTTTCGAAACATAATACTCCACATAGCAGCAGCGGCGTCTTTCCTGTGTTGAATTCACTAGTGATCAGTGGCGGATCCAGAAATTTTGACCACATAGAGAAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

117

Amino Acids

13.19

Weight (kDa)

8.69

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 279, 318
AclWI GGATC 2 cut(s) 315, 328
AcsI RAATTY 3 cut(s) 298, 328, 348
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 176
AfeI AGCGCT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 298
AhlI ACTAGT 1 cut(s) 304
AluBI AGCT 2 cut(s) 149, 221
AluI AGCT 2 cut(s) 149, 221
AlwI GGATC 2 cut(s) 315, 328
Aor51HI AGCGCT 1 cut(s) 64
ApeKI GCWGC 3 cut(s) 65, 273, 276
ApoI RAATTY 3 cut(s) 298, 328, 348
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspLEI GCGC 1 cut(s) 65
AsuII TTCGAA 1 cut(s) 251
BamHI GGATCC 1 cut(s) 320
BbvI GCAGC 3 cut(s) 52, 285, 288
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BclI TGATCA 1 cut(s) 309
BcuI ACTAGT 1 cut(s) 304
BfaI CTAG 1 cut(s) 305
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 4 cut(s) 66, 274, 277, 280
BlsI GCNGC 4 cut(s) 67, 275, 278, 281
BmiI GGNNCC 1 cut(s) 322
BmsI GCATC 1 cut(s) 46
Bpu14I TTCGAA 1 cut(s) 251
BpuEI CTTGAG 2 cut(s) 129, 134
BsaBI GATNNNNATC 1 cut(s) 168
BsaHI GRCGYC 1 cut(s) 282
Bse8I GATNNNNATC 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 168
BseXI GCAGC 3 cut(s) 52, 285, 288
BslFI GGGAC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 251
Bsp143I GATC 4 cut(s) 49, 169, 309, 320
BspACI CCGC 2 cut(s) 279, 318
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 2 cut(s) 315, 328
BspT104I TTCGAA 1 cut(s) 251
BssMI GATC 4 cut(s) 49, 169, 309, 320
BssNI GRCGYC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 282
BstAPI GCANNNNNTGC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 4 cut(s) 52, 172, 312, 323
BstMBI GATC 4 cut(s) 49, 169, 309, 320
BstMWI GCNNNNNNNGC 2 cut(s) 65, 279
BstV1I GCAGC 3 cut(s) 52, 285, 288
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 319
Cac8I GCNNGC 1 cut(s) 61
CfoI GCGC 1 cut(s) 65
CseI GACGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 2 cut(s) 149, 221
CviKI_1 RGCY 2 cut(s) 149, 221
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 1 cut(s) 160
DpnI GATC 4 cut(s) 51, 171, 311, 322
DpnII GATC 4 cut(s) 49, 169, 309, 320
EciI GGCGGA 1 cut(s) 333
Eco47III AGCGCT 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 298
FaiI YATR 6 cut(s) 6, 24, 134, 258, 270, 341
FaqI GGGAC 1 cut(s) 181
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 66, 274, 277, 280
Fsp4HI GCNGC 4 cut(s) 66, 274, 277, 280
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 64
GluI GCNGC 4 cut(s) 66, 274, 277, 280
HaeII RGCGCY 1 cut(s) 66
HgaI GACGC 1 cut(s) 271
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 282
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 2 cut(s) 153, 234
Hpy188III TCNNGA 4 cut(s) 47, 53, 113, 324
Hpy8I GTNNAC 1 cut(s) 46
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 279
HpyF3I CTNAG 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 282
HspAI GCGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 4 cut(s) 49, 169, 309, 320
LpnPI CCDG 4 cut(s) 118, 226, 303, 337
Lsp1109I GCAGC 3 cut(s) 52, 285, 288
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 305
MalI GATC 4 cut(s) 51, 171, 311, 322
MboI GATC 4 cut(s) 49, 169, 309, 320
MboII GAAGA 1 cut(s) 139
MflI RGATCY 1 cut(s) 320
MluCI AATT 4 cut(s) 7, 298, 328, 348
MnlI CCTC 1 cut(s) 153
MseI TTAA 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 65, 279
NdeII GATC 4 cut(s) 49, 169, 309, 320
NlaIV GGNNCC 1 cut(s) 322
NspV TTCGAA 1 cut(s) 251
PctI GAATGC 1 cut(s) 108
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 4 cut(s) 67, 275, 278, 281
PspN4I GGNNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 4 cut(s) 66, 274, 277, 280
Sau3AI GATC 4 cut(s) 49, 169, 309, 320
SetI ASST 3 cut(s) 145, 151, 223
SfaNI GCATC 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 251
SmlI CTYRAG 2 cut(s) 113, 144
SmoI CTYRAG 2 cut(s) 113, 144
SpeI ACTAGT 1 cut(s) 304
Sse9I AATT 4 cut(s) 7, 298, 328, 348
SsiI CCGC 2 cut(s) 279, 318
SspMI CTAG 1 cut(s) 305
TaqI TCGA 1 cut(s) 251
TasI AATT 4 cut(s) 7, 298, 328, 348
TauI GCSGC 1 cut(s) 282
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 1 cut(s) 319
TseI GCWGC 3 cut(s) 65, 273, 276
TspDTI ATGAA 2 cut(s) 140, 206
TspRI CASTG 1 cut(s) 319
XapI RAATTY 3 cut(s) 298, 328, 348
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.