Rh6BG453500

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000203
Physical Location & Seq
Forward (+)
66690634 .. 66691353
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG453500.1

Sequence Viewer

Length: 720 bp
ATGATACTCAGTTTGCGTCAATCCAACATCAAGCAATTGCCTGATACATTTAAAAATTTGTCTAATCTGAGATTGCTTGATTTGTCCTTTTGTTGGGAGCTTGAAATAATCCCACCAGGTGTGATATCAAGTTTATCCCGACTAGAAGAATTGTACATGTTGGGTAGCTTTGCTAATTGGGTGATTGATAAACTAGCCTCGATCGAAACAACCAATTGGATCTCTCAATTGGAGGCTGAAGAAAGAGCCGGATCTGAAGAAGTGAACAAGTGGAAGAGAATCTACACATTGGCGGCTGAACAACCAGCCAACCAAGAGGAGATTAATGGGCTTCTTGAAGAATGTGAAGAGAGGAGAAGGTGGGCCAAGTCCATGGACTGGACAAGTGGGATACTTTCAGAGCTACTTTCCTTGTCCGGTTTGACTCGTTTAAGTGTTTTTCTACCACCGCTTGATATTCTGCTAACAACCGATGTACTGGGCAAGAAGCTTGAGAGATTTCAGATCTCTCTAGGATGGACTACTCCATGGGGATTTGAAGTCCCGCCGCCTTCTGAGAACTACTTGAGAGTTTTTGATCTTGATGCAAGCTCACTCGTGGGTAGTAATATCAGTCGGTTGCGAAACAAAACTAACACTCTTGTGTTACGCGTGAAGAATTTTTTTTTTTTTTTTTTTTTGATTACAAGGATGCCCGAAGGCAAAGGACAAAAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

239

Amino Acids

27.46

Weight (kDa)

5.32

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 2 - 53 7.9e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 378
AccII CGCG 1 cut(s) 651
AciI CCGC 4 cut(s) 293, 449, 545, 548
AclWI GGATC 2 cut(s) 227, 259
AcsI RAATTY 2 cut(s) 55, 658
AcuI CTGAAG 2 cut(s) 258, 276
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 2 cut(s) 155, 477
AfiI CCNNNNNNNGG 2 cut(s) 93, 378
AflIII ACRYGT 2 cut(s) 156, 649
AgsI TTSAA 3 cut(s) 104, 338, 539
AjnI CCWGG 1 cut(s) 115
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 5 cut(s) 100, 168, 403, 490, 591
AluI AGCT 5 cut(s) 100, 168, 403, 490, 591
AlwI GGATC 2 cut(s) 227, 259
AoxI GGCC 1 cut(s) 363
ApoI RAATTY 2 cut(s) 55, 658
AseI ATTAAT 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 193
BarI GAAGNNNNNNTAC 2 cut(s) 266, 298
BauI CACGAG 1 cut(s) 596
BccI CCATC 1 cut(s) 510
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 384
BfaI CTAG 3 cut(s) 143, 194, 512
BfuI GTATCC 1 cut(s) 384
BglII AGATCT 1 cut(s) 504
BisI GCNGC 2 cut(s) 294, 548
BlsI GCNGC 2 cut(s) 295, 549
Bme1390I CCNGG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 363
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 488
BmsI GCATC 2 cut(s) 574, 681
BmuI ACTGGG 1 cut(s) 488
BpuEI CTTGAG 2 cut(s) 512, 586
BsaJI CCNNGG 2 cut(s) 372, 527
BsaWI WCCGGW 1 cut(s) 416
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 378
Bse1I ACTGG 2 cut(s) 383, 483
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 372, 527
BseGI GGATG 2 cut(s) 521, 696
BseLI CCNNNNNNNGG 2 cut(s) 93, 378
BseMII CTCAG 3 cut(s) 22, 59, 546
BseNI ACTGG 2 cut(s) 383, 483
BseRI GAGGAG 2 cut(s) 332, 367
Bsh1236I CGCG 1 cut(s) 651
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 365
BsiEI CGRYCG 1 cut(s) 204
BsiSI CCGG 2 cut(s) 249, 417
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 93, 378
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 1 cut(s) 365
Bsp1407I TGTACA 1 cut(s) 153
Bsp143I GATC 5 cut(s) 201, 219, 251, 504, 577
Bsp19I CCATGG 2 cut(s) 372, 527
BspACI CCGC 4 cut(s) 293, 449, 545, 548
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 3 cut(s) 21, 60, 547
BspFNI CGCG 1 cut(s) 651
BspPI GGATC 2 cut(s) 227, 259
BsrGI TGTACA 1 cut(s) 153
BsrI ACTGG 2 cut(s) 383, 483
BssECI CCNNGG 2 cut(s) 372, 527
BssMI GATC 5 cut(s) 201, 219, 251, 504, 577
BssSI CACGAG 1 cut(s) 596
BssT1I CCWWGG 2 cut(s) 372, 527
Bst2BI CACGAG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 117
Bst6I CTCTTC 2 cut(s) 269, 342
BstAUI TGTACA 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 589
BstDEI CTNAG 3 cut(s) 8, 68, 555
BstDSI CCRYGG 2 cut(s) 372, 527
BstF5I GGATG 2 cut(s) 521, 696
BstFNI CGCG 1 cut(s) 651
BstKTI GATC 5 cut(s) 204, 222, 254, 507, 580
BstMBI GATC 5 cut(s) 201, 219, 251, 504, 577
BstMCI CGRYCG 1 cut(s) 204
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 115
BstUI CGCG 1 cut(s) 651
BstX2I RGATCY 3 cut(s) 219, 251, 504
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 3 cut(s) 219, 251, 504
BsuI GTATCC 1 cut(s) 384
BsuRI GGCC 1 cut(s) 365
BtgI CCRYGG 2 cut(s) 372, 527
BtsCI GGATG 2 cut(s) 521, 696
Cac8I GCNNGC 1 cut(s) 589
Cfr13I GGNCC 1 cut(s) 363
CseI GACGC 1 cut(s) 5
CsiI ACCWGGT 1 cut(s) 115
Csp6I GTAC 2 cut(s) 154, 476
CviAII CATG 3 cut(s) 157, 373, 528
CviQI GTAC 2 cut(s) 154, 476
DdeI CTNAG 3 cut(s) 8, 68, 555
DpnI GATC 5 cut(s) 203, 221, 253, 506, 579
DpnII GATC 5 cut(s) 201, 219, 251, 504, 577
DraI TTTAAA 1 cut(s) 52
DraIII CACNNNGTG 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 269, 342
EarI CTCTTC 2 cut(s) 269, 342
Eco130I CCWWGG 2 cut(s) 372, 527
Eco32I GATATC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 258, 276
EcoRII CCWGG 1 cut(s) 115
EcoRV GATATC 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 372, 527
ErhI CCWWGG 2 cut(s) 372, 527
FaeI CATG 3 cut(s) 160, 376, 531
FaiI YATR 3 cut(s) 158, 374, 529
FaqI GGGAC 1 cut(s) 527
FatI CATG 3 cut(s) 156, 372, 527
FauI CCCGC 1 cut(s) 552
Fnu4HI GCNGC 2 cut(s) 294, 548
FokI GGATG 2 cut(s) 528, 703
Fsp4HI GCNGC 2 cut(s) 294, 548
FspBI CTAG 3 cut(s) 143, 194, 512
GluI GCNGC 2 cut(s) 294, 548
HaeIII GGCC 1 cut(s) 365
HapII CCGG 2 cut(s) 249, 417
HgaI GACGC 1 cut(s) 5
Hin1II CATG 3 cut(s) 160, 376, 531
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 279, 424
HpaII CCGG 2 cut(s) 249, 417
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 5 cut(s) 69, 256, 400, 504, 556
Hpy188III TCNNGA 3 cut(s) 138, 335, 581
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 3 cut(s) 351, 561, 692
HpyCH4V TGCA 1 cut(s) 587
HpyF3I CTNAG 3 cut(s) 8, 68, 555
Hsp92II CATG 3 cut(s) 160, 376, 531
Kzo9I GATC 5 cut(s) 201, 219, 251, 504, 577
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 8 cut(s) 54, 102, 129, 262, 318, 364, 430, 464
LweI GCATC 2 cut(s) 574, 681
MabI ACCWGGT 1 cut(s) 115
MaeI CTAG 3 cut(s) 143, 194, 512
MaeIII GTNAC 1 cut(s) 645
MalI GATC 5 cut(s) 203, 221, 253, 506, 579
MboI GATC 5 cut(s) 201, 219, 251, 504, 577
MboII GAAGA 7 cut(s) 158, 251, 269, 286, 350, 359, 667
MfeI CAATTG 3 cut(s) 35, 214, 227
MflI RGATCY 3 cut(s) 219, 251, 504
MluCI AATT 7 cut(s) 35, 55, 149, 175, 214, 227, 658
MluI ACGCGT 1 cut(s) 649
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 4 cut(s) 208, 226, 310, 345
MseI TTAA 3 cut(s) 51, 324, 431
MslI CAYNNNNRTG 1 cut(s) 641
MspI CCGG 2 cut(s) 249, 417
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 3 cut(s) 35, 214, 227
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 651
NcoI CCATGG 2 cut(s) 372, 527
NdeII GATC 5 cut(s) 201, 219, 251, 504, 577
NlaIII CATG 3 cut(s) 160, 376, 531
NspI RCATGY 1 cut(s) 160
OliI CACNNNNGTG 1 cut(s) 641
PciI ACATGT 1 cut(s) 156
PfeI GAWTC 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 378
PkrI GCNGC 2 cut(s) 295, 549
Ple19I CGATCG 1 cut(s) 204
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PscI ACATGT 1 cut(s) 156
PshBI ATTAAT 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 1 cut(s) 363
PsuI RGATCY 3 cut(s) 219, 251, 504
PvuI CGATCG 1 cut(s) 204
RsaI GTAC 2 cut(s) 155, 477
RsaNI GTAC 2 cut(s) 154, 476
RseI CAYNNNNRTG 1 cut(s) 641
SaqAI TTAA 3 cut(s) 51, 324, 431
SatI GCNGC 2 cut(s) 294, 548
Sau3AI GATC 5 cut(s) 201, 219, 251, 504, 577
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 117
SetI ASST 8 cut(s) 102, 121, 170, 362, 405, 492, 593, 719
SexAI ACCWGGT 1 cut(s) 115
SfaNI GCATC 2 cut(s) 574, 681
SmiMI CAYNNNNRTG 1 cut(s) 641
SmlI CTYRAG 2 cut(s) 491, 565
SmoI CTYRAG 2 cut(s) 491, 565
Sse9I AATT 7 cut(s) 35, 55, 149, 175, 214, 227, 658
SsiI CCGC 4 cut(s) 293, 449, 545, 548
SspMI CTAG 3 cut(s) 143, 194, 512
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 2 cut(s) 372, 527
TaqI TCGA 2 cut(s) 200, 204
TasI AATT 7 cut(s) 35, 55, 149, 175, 214, 227, 658
TatI WGTACW 2 cut(s) 153, 475
TauI GCSGC 2 cut(s) 296, 550
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 3 cut(s) 51, 324, 431
Tru9I TTAA 3 cut(s) 51, 324, 431
Van91I CCANNNNNTGG 1 cut(s) 378
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 2 cut(s) 55, 658
XceI RCATGY 1 cut(s) 160
XspI CTAG 3 cut(s) 143, 194, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.