Rmu_sc0018903.1_g000001

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018903.1
OG0000203
Physical Location & Seq
Reverse (-)
1 .. 1638
1638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018903.1_g000001.1.cds

Sequence Viewer

Length: 1032 bp
atggatctgcaggttgattttccagttttggagacactagaacttcgtaccatgcgccacttcaaagagatatggaagaacaaacttccaccccactccttctgtgaacttagagatctaaccgtgttcagttgtatggaattattgcatttggtgccaatgtttatgcaaaacaggctgctgaaactagagaagttacatgtcagtaactgcaggtcactagaagagatttttgaattgagagaattgtctgctgatgaaggggaagctgtaaccatttcacagtcaggggagacatcttcaatttcccaacctgaacgaataataaaccagatggattccagactaacccgaggctttccaaatttgacatcaataaatatttctcattgtaaccatttgagaaatctgctctctctctccattgccagaggtctggtgaagctcaaaaatctatccatagctcactgccagaagatggaagaaatcatagcagcagatggcgagggaacagaggacacggttgttttcccaatcctggagacactagaaattcgcgacatggacaacttcaaggagatattcagcaaacaaatttcacacaattacttctgtgaactaagagatctaaacgtgtccaattgtatgaaattattgcattcggtgccaatgtttatgcaaaacaggttcccgaaactagagaagttacatgtcagtgactgcaggtcactagaagggctttttgaattgagaaaaatatctgctgatgaaggggaagctgtaaccatttcacagtcaggggaaacaccttctatttcccaacctgaacgaacaataaaccagatggattacagactaaccaaaggctttccaaatttgacatcaataaagatttctggttgtaacaatttgagaaatctgctttctctctccattgccataggtctggtgaagctcaaaaatctatccatagatcactgccagaagatggaagaaatcatagcagcagatggcgaggacacagaggacacg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

344

Amino Acids

39.27

Weight (kDa)

5.46

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 204, 714
AccB1I GGYRCC 2 cut(s) 154, 664
AccB7I CCANNNNNTGG 2 cut(s) 478, 988
AccII CGCG 1 cut(s) 558
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 4 cut(s) 364, 552, 594, 874
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 3 cut(s) 478, 538, 988
AflIII ACRYGT 3 cut(s) 199, 633, 709
AgsI TTSAA 5 cut(s) 64, 236, 303, 574, 746
AhdI GACNNNNNGTC 1 cut(s) 724
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 5 cut(s) 269, 445, 464, 779, 955
AluI AGCT 5 cut(s) 269, 445, 464, 779, 955
Alw26I GTCTC 3 cut(s) 26, 287, 536
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 2 cut(s) 210, 720
Ama87I CYCGRG 1 cut(s) 351
ApeKI GCWGC 3 cut(s) 178, 494, 1004
ApoI RAATTY 4 cut(s) 364, 552, 594, 874
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 451, 961
AvaI CYCGRG 1 cut(s) 351
BanI GGYRCC 2 cut(s) 154, 664
BbvI GCAGC 3 cut(s) 165, 506, 1016
BccI CCATC 6 cut(s) 328, 472, 494, 838, 982, 1004
BciT130I CCWGG 1 cut(s) 539
BcoDI GTCTC 3 cut(s) 26, 287, 536
BfaI CTAG 6 cut(s) 38, 188, 221, 548, 698, 731
BfmI CTRYAG 3 cut(s) 8, 211, 721
BfuAI ACCTGC 2 cut(s) 204, 714
BglII AGATCT 2 cut(s) 115, 625
BisI GCNGC 3 cut(s) 179, 495, 1005
BlsI GCNGC 3 cut(s) 180, 496, 1006
Bme1390I CCNGG 1 cut(s) 539
BmeRI GACNNNNNGTC 1 cut(s) 724
BmeT110I CYCGRG 1 cut(s) 351
BmiI GGNNCC 3 cut(s) 156, 666, 689
BmrFI CCNGG 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 538, 988
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 2 cut(s) 423, 933
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 1 cut(s) 352
BseLI CCNNNNNNNGG 3 cut(s) 478, 538, 988
BseMI GCAATG 2 cut(s) 423, 933
BseNI ACTGG 1 cut(s) 23
BseXI GCAGC 3 cut(s) 165, 506, 1016
Bsh1236I CGCG 1 cut(s) 558
BshNI GGYRCC 2 cut(s) 154, 664
BsiHKCI CYCGRG 1 cut(s) 351
BslI CCNNNNNNNGG 3 cut(s) 478, 538, 988
BsmAI GTCTC 3 cut(s) 26, 287, 536
BsmI GAATGC 1 cut(s) 658
BsoBI CYCGRG 1 cut(s) 351
Bsp143I GATC 4 cut(s) 4, 115, 625, 973
Bsp68I TCGCGA 1 cut(s) 558
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 3 cut(s) 156, 666, 689
BspMAI CTGCAG 3 cut(s) 12, 215, 725
BspMI ACCTGC 2 cut(s) 204, 714
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 154, 664
BsrDI GCAATG 2 cut(s) 423, 933
BsrI ACTGG 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 4 cut(s) 4, 115, 625, 973
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 4 cut(s) 124, 285, 523, 795
Bst6I CTCTTC 1 cut(s) 219
BstAPI GCANNNNNTGC 2 cut(s) 154, 664
BstDEI CTNAG 2 cut(s) 110, 620
BstFNI CGCG 1 cut(s) 558
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 4 cut(s) 7, 118, 628, 976
BstMAI GTCTC 3 cut(s) 26, 287, 536
BstMBI GATC 4 cut(s) 4, 115, 625, 973
BstMWI GCNNNNNNNGC 3 cut(s) 154, 175, 664
BstNI CCWGG 1 cut(s) 539
BstNSI RCATGY 2 cut(s) 203, 713
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 3 cut(s) 8, 211, 721
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 3 cut(s) 165, 506, 1016
BstX2I RGATCY 3 cut(s) 4, 115, 625
BstXI CCANNNNNNTGG 2 cut(s) 436, 946
BstYI RGATCY 3 cut(s) 4, 115, 625
BtsI GCAGTG 2 cut(s) 466, 976
BtsIMutI CAGTG 3 cut(s) 466, 721, 976
BtuMI TCGCGA 1 cut(s) 558
BveI ACCTGC 2 cut(s) 204, 714
CaiI CAGNNNCTG 2 cut(s) 210, 720
CfoI GCGC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 48
CviAII CATG 4 cut(s) 52, 200, 562, 710
CviJI RGCY 9 cut(s) 178, 269, 357, 445, 464, 739, 779, 867, 955
CviKI_1 RGCY 9 cut(s) 178, 269, 357, 445, 464, 739, 779, 867, 955
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 2 cut(s) 110, 620
DpnI GATC 4 cut(s) 6, 117, 627, 975
DpnII GATC 4 cut(s) 4, 115, 625, 973
DriI GACNNNNNGTC 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 219
Eam1105I GACNNNNNGTC 1 cut(s) 724
EarI CTCTTC 1 cut(s) 219
Eco88I CYCGRG 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 537
FaeI CATG 4 cut(s) 55, 203, 565, 713
FatI CATG 4 cut(s) 51, 199, 561, 709
Fnu4HI GCNGC 3 cut(s) 179, 495, 1005
Fsp4HI GCNGC 3 cut(s) 179, 495, 1005
FspBI CTAG 6 cut(s) 38, 188, 221, 548, 698, 731
GlaI GCGC 1 cut(s) 56
GluI GCNGC 3 cut(s) 179, 495, 1005
GsuI CTGGAG 1 cut(s) 560
HhaI GCGC 1 cut(s) 57
Hin1II CATG 4 cut(s) 55, 203, 565, 713
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 338
HphI GGTGA 2 cut(s) 451, 961
Hpy166II GTNNAC 2 cut(s) 107, 617
Hpy188III TCNNGA 3 cut(s) 342, 557, 691
Hpy8I GTNNAC 2 cut(s) 107, 617
HpyAV CCTTC 5 cut(s) 109, 254, 728, 764, 819
HpyCH4III ACNGT 4 cut(s) 124, 285, 523, 795
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 7 cut(s) 10, 148, 169, 213, 658, 679, 723
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 175, 664
HpyF3I CTNAG 2 cut(s) 110, 620
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 4 cut(s) 55, 203, 565, 713
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 4, 115, 625, 973
Lsp1109I GCAGC 3 cut(s) 165, 506, 1016
MaeI CTAG 6 cut(s) 38, 188, 221, 548, 698, 731
MaeII ACGT 1 cut(s) 633
MalI GATC 4 cut(s) 6, 117, 627, 975
MboI GATC 4 cut(s) 4, 115, 625, 973
MboII GAAGA 7 cut(s) 88, 236, 291, 487, 494, 997, 1004
MfeI CAATTG 1 cut(s) 640
MflI RGATCY 3 cut(s) 4, 115, 625
MnlI CCTC 6 cut(s) 347, 425, 499, 508, 1009, 1018
MslI CAYNNNNRTG 1 cut(s) 714
MspR9I CCNGG 1 cut(s) 539
MunI CAATTG 1 cut(s) 640
Mva1269I GAATGC 1 cut(s) 658
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 3 cut(s) 154, 175, 664
NdeII GATC 4 cut(s) 4, 115, 625, 973
NlaIII CATG 4 cut(s) 55, 203, 565, 713
NlaIV GGNNCC 3 cut(s) 156, 666, 689
NmuCI GTSAC 3 cut(s) 216, 716, 726
NruI TCGCGA 1 cut(s) 558
NspI RCATGY 2 cut(s) 203, 713
PciI ACATGT 2 cut(s) 199, 709
PctI GAATGC 1 cut(s) 658
PfeI GAWTC 1 cut(s) 338
PflMI CCANNNNNTGG 2 cut(s) 478, 988
PfoI TCCNGGA 1 cut(s) 537
PkrI GCNGC 3 cut(s) 180, 496, 1006
PscI ACATGT 2 cut(s) 199, 709
Psp6I CCWGG 1 cut(s) 537
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 3 cut(s) 156, 666, 689
PstI CTGCAG 3 cut(s) 12, 215, 725
PstNI CAGNNNCTG 2 cut(s) 210, 720
PsuI RGATCY 3 cut(s) 4, 115, 625
RruI TCGCGA 1 cut(s) 558
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
RseI CAYNNNNRTG 1 cut(s) 714
SatI GCNGC 3 cut(s) 179, 495, 1005
Sau3AI GATC 4 cut(s) 4, 115, 625, 973
ScrFI CCNGG 1 cut(s) 539
SfcI CTRYAG 3 cut(s) 8, 211, 721
SmiMI CAYNNNNRTG 1 cut(s) 714
SspI AATATT 1 cut(s) 382
SspMI CTAG 6 cut(s) 38, 188, 221, 548, 698, 731
StyD4I CCNGG 1 cut(s) 537
TaaI ACNGT 4 cut(s) 124, 285, 523, 795
TaiI ACGT 1 cut(s) 636
TfiI GAWTC 1 cut(s) 338
TscAI CASTG 3 cut(s) 473, 721, 983
TseFI GTSAC 3 cut(s) 216, 716, 726
TseI GCWGC 3 cut(s) 178, 494, 1004
Tsp45I GTSAC 3 cut(s) 216, 716, 726
TspDTI ATGAA 3 cut(s) 273, 662, 783
TspRI CASTG 3 cut(s) 473, 721, 983
Van91I CCANNNNNTGG 2 cut(s) 478, 988
XapI RAATTY 4 cut(s) 364, 552, 594, 874
XceI RCATGY 2 cut(s) 203, 713
XspI CTAG 6 cut(s) 38, 188, 221, 548, 698, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.