Rmu_sc0000014.1_g000008

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000014.1
OG0000203
Physical Location & Seq
Forward (+)
43178 .. 44095
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000014.1_g000008.1.cds

Sequence Viewer

Length: 918 bp
atgggaggcattgggaagacaacattgatggggcaaatttttgagaaagcgaaggaagagggtctgttcgatgagtatataaaggcaaccgttaaggaatctcttgacaaagctcctgatgtgattcagattcaaggtgaacttgcagaatatctaggcaagaagatccttgaggacgaaaaagagagaggtccaagagcaagtaagctacgtcaaagattatctcaaggcaacaagaagatccttgtaatgttagacaatgtttcaacaacaacctcagaccttttgtgggaaatagggattccccctagttgtaaacttctggtcacatcaaggcaacaagatctattcaaggacatggacagaagaaagaacttctcaattgatggtttgccagatagagacgcctggagtctatttaagaagacagcaggaagtgccatcgaatctgatctcgaattgcatgttgtagcagaaaaggttctggaggaatgtgctgggttgccaattgcaatttcaactattgaaacggcactaaaaggtgaaagcattgcaatttggaagaatgcactaaaggaactagaaaaggctagcccagaaaacgttccgggagtgatagaacatgtgtatggtaaaataaagttcagctatgaatgtttacgaaacgaggaagccaaatcatgttttttgctgtgttgcatatttgaagaaagcgctgatataccaatcgaagatttggttagatacaggcttgggcttgagctctttaaaggcattgattcaatggttgaaggaagaaaccgtatggaaacattggttcagacacttaaaagtcgctttttattgttagacagtgatgataagccagaatttgtgagaatgcatgatgtggtgcatgatgtagccgtatatatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

305

Amino Acids

34.41

Weight (kDa)

5.18

Isoelectric Point (pI)

38.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 603
AclWI GGATC 2 cut(s) 160, 235
AcsI RAATTY 2 cut(s) 36, 869
AcyI GRCGYC 1 cut(s) 405
AfeI AGCGCT 1 cut(s) 715
AfiI CCNNNNNNNGG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 8 cut(s) 134, 267, 352, 519, 527, 707, 783, 791
AjnI CCWGG 1 cut(s) 407
AjuI GAANNNNNNNTTGG 2 cut(s) 499, 531
AluBI AGCT 4 cut(s) 113, 208, 648, 763
AluI AGCT 4 cut(s) 113, 208, 648, 763
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 1 cut(s) 396
AlwI GGATC 2 cut(s) 160, 235
Aor51HI AGCGCT 1 cut(s) 715
ApoI RAATTY 2 cut(s) 36, 869
Asp700I GAANNNNTTC 2 cut(s) 480, 603
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 609
AsuHPI GGTGA 2 cut(s) 149, 554
AsuNHI GCTAGC 1 cut(s) 590
AvaII GGWCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 765
BbsI GAAGAC 2 cut(s) 23, 431
Bbv12I GWGCWC 1 cut(s) 765
BccI CCATC 3 cut(s) 22, 380, 449
BceAI ACGGC 2 cut(s) 546, 890
BciT130I CCWGG 1 cut(s) 409
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 1 cut(s) 396
BfaI CTAG 4 cut(s) 155, 309, 581, 591
BfoI RGCGCY 1 cut(s) 717
BglII AGATCT 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 409, 609
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 409, 609
BmtI GCTAGC 1 cut(s) 594
BpiI GAAGAC 2 cut(s) 23, 431
BpmI CTGGAG 2 cut(s) 430, 506
BpuEI CTTGAG 3 cut(s) 191, 210, 779
BpuMI CCSGG 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 1 cut(s) 291
BseYI CCCAGC 1 cut(s) 497
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 1 cut(s) 608
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 396
BsmBI CGTCTC 1 cut(s) 396
BsmI GAATGC 2 cut(s) 571, 885
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 4 cut(s) 165, 240, 343, 451
BspCNI CTCAG 1 cut(s) 290
BspOI GCTAGC 1 cut(s) 594
BspPI GGATC 2 cut(s) 160, 235
BsrDI GCAATG 1 cut(s) 549
BssMI GATC 4 cut(s) 165, 240, 343, 451
BssNI GRCGYC 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 3 cut(s) 91, 803, 854
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 592
BstDEI CTNAG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 4 cut(s) 168, 243, 346, 454
BstMAI GTCTC 1 cut(s) 396
BstMBI GATC 4 cut(s) 165, 240, 343, 451
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 1 cut(s) 409
BstNSI RCATGY 2 cut(s) 467, 626
BstSCI CCNGG 2 cut(s) 407, 607
BstV2I GAAGAC 2 cut(s) 23, 431
BstX2I RGATCY 3 cut(s) 165, 240, 343
BstYI RGATCY 3 cut(s) 165, 240, 343
BtsIMutI CAGTG 1 cut(s) 859
Cac8I GCNNGC 1 cut(s) 592
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 1 cut(s) 413
CviAII CATG 6 cut(s) 358, 464, 623, 681, 884, 896
DdeI CTNAG 1 cut(s) 277
DpnI GATC 4 cut(s) 167, 242, 345, 453
DpnII GATC 4 cut(s) 165, 240, 343, 451
DraI TTTAAA 1 cut(s) 769
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 763
Eco24I GRGCYC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 191
Eco47III AGCGCT 1 cut(s) 715
Eco53kI GAGCTC 1 cut(s) 763
EcoICRI GAGCTC 1 cut(s) 763
EcoRII CCWGG 1 cut(s) 407
EcoT22I ATGCAT 1 cut(s) 885
EcoT38I GRGCYC 1 cut(s) 765
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 6 cut(s) 361, 467, 626, 684, 887, 899
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FatI CATG 6 cut(s) 357, 463, 622, 680, 883, 895
FriOI GRGCYC 1 cut(s) 765
FspBI CTAG 4 cut(s) 155, 309, 581, 591
GlaI GCGC 1 cut(s) 715
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 2 cut(s) 430, 506
HaeII RGCGCY 1 cut(s) 717
HapII CCGG 1 cut(s) 608
HgaI GACGC 1 cut(s) 413
HhaI GCGC 1 cut(s) 716
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 6 cut(s) 361, 467, 626, 684, 887, 899
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HinfI GANTC 7 cut(s) 98, 124, 130, 301, 412, 446, 779
HpaII CCGG 1 cut(s) 608
HphI GGTGA 2 cut(s) 149, 554
Hpy166II GTNNAC 3 cut(s) 140, 317, 659
Hpy188I TCNGA 4 cut(s) 129, 280, 451, 822
Hpy188III TCNNGA 4 cut(s) 104, 116, 455, 485
Hpy8I GTNNAC 3 cut(s) 140, 317, 659
HpyAV CCTTC 2 cut(s) 46, 785
HpyCH4III ACNGT 3 cut(s) 91, 803, 854
HpyCH4IV ACGT 2 cut(s) 211, 603
HpyCH4V TGCA 8 cut(s) 146, 463, 512, 554, 569, 699, 883, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 2 cut(s) 211, 603
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 6 cut(s) 361, 467, 626, 684, 887, 899
HspAI GCGC 1 cut(s) 714
Kzo9I GATC 4 cut(s) 165, 240, 343, 451
LmnI GCTCC 1 cut(s) 118
MaeI CTAG 4 cut(s) 155, 309, 581, 591
MaeII ACGT 2 cut(s) 211, 603
MaeIII GTNAC 1 cut(s) 325
MalI GATC 4 cut(s) 167, 242, 345, 453
MboI GATC 4 cut(s) 165, 240, 343, 451
MfeI CAATTG 2 cut(s) 381, 507
MflI RGATCY 3 cut(s) 165, 240, 343
MhlI GDGCHC 1 cut(s) 765
MluCI AATT 7 cut(s) 36, 381, 458, 507, 513, 555, 869
MlyI GAGTC 1 cut(s) 421
MnlI CCTC 6 cut(s) 52, 166, 182, 286, 481, 661
Mph1103I ATGCAT 1 cut(s) 885
MroXI GAANNNNTTC 2 cut(s) 480, 603
MseI TTAA 4 cut(s) 93, 420, 768, 828
MslI CAYNNNNRTG 1 cut(s) 627
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 2 cut(s) 409, 609
MunI CAATTG 2 cut(s) 381, 507
Mva1269I GAATGC 2 cut(s) 571, 885
MvaI CCWGG 1 cut(s) 409
MwoI GCNNNNNNNGC 1 cut(s) 437
NciI CCSGG 1 cut(s) 609
NdeII GATC 4 cut(s) 165, 240, 343, 451
NheI GCTAGC 1 cut(s) 590
NlaIII CATG 6 cut(s) 361, 467, 626, 684, 887, 899
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 885
NspI RCATGY 2 cut(s) 467, 626
PciI ACATGT 1 cut(s) 622
PctI GAATGC 2 cut(s) 571, 885
PdmI GAANNNNTTC 2 cut(s) 480, 603
PfeI GAWTC 6 cut(s) 98, 124, 130, 301, 446, 779
PfoI TCCNGGA 1 cut(s) 607
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PscI ACATGT 1 cut(s) 622
Psp124BI GAGCTC 1 cut(s) 765
Psp1406I AACGTT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 407
PspFI CCCAGC 1 cut(s) 497
PspGI CCWGG 1 cut(s) 407
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 3 cut(s) 165, 240, 343
RseI CAYNNNNRTG 1 cut(s) 627
SacI GAGCTC 1 cut(s) 765
SaqAI TTAA 4 cut(s) 93, 420, 768, 828
Sau3AI GATC 4 cut(s) 165, 240, 343, 451
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 2 cut(s) 409, 609
SduI GDGCHC 1 cut(s) 765
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 3 cut(s) 170, 225, 758
SmoI CTYRAG 3 cut(s) 170, 225, 758
Sse9I AATT 7 cut(s) 36, 381, 458, 507, 513, 555, 869
SspMI CTAG 4 cut(s) 155, 309, 581, 591
SstI GAGCTC 1 cut(s) 765
StyD4I CCNGG 2 cut(s) 407, 607
TaaI ACNGT 3 cut(s) 91, 803, 854
TaiI ACGT 2 cut(s) 214, 606
TaqI TCGA 4 cut(s) 69, 444, 456, 729
TasI AATT 7 cut(s) 36, 381, 458, 507, 513, 555, 869
TfiI GAWTC 6 cut(s) 98, 124, 130, 301, 446, 779
Tru1I TTAA 4 cut(s) 93, 420, 768, 828
Tru9I TTAA 4 cut(s) 93, 420, 768, 828
TscAI CASTG 1 cut(s) 859
TseFI GTSAC 1 cut(s) 325
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 1 cut(s) 666
TspRI CASTG 1 cut(s) 859
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 2 cut(s) 36, 869
XceI RCATGY 2 cut(s) 467, 626
XmnI GAANNNNTTC 2 cut(s) 480, 603
XspI CTAG 4 cut(s) 155, 309, 581, 591
Zsp2I ATGCAT 1 cut(s) 885
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.