Rmu_sc0016179.1_g000008

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016179.1
OG0000203
Physical Location & Seq
Reverse (-)
28896 .. 29189
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016179.1_g000008.1.cds

Sequence Viewer

Length: 294 bp
atgatacgtaactgcaagaagattgaagaagtagttgcaacagcagcagagggtgaagaaacaaatgatgacaccttgttccctcagccatgtaccttgacacttgacgatctaccaaatctcagaagcttttcgcaaggtaaagataatttcaaatggccactagtgaaaaacataaaaatcctcaaatgctacaatatgaagaagttttgttttggatccctaagcacaccaaaggaagtgaacatagatgtcaaaggtgccggtgagagtgtttttgcaggagctcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

97

Amino Acids

10.79

Weight (kDa)

6.23

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 260
AclWI GGATC 2 cut(s) 213, 226
AcoI YGGCCR 1 cut(s) 158
AfaI GTAC 1 cut(s) 94
AgsI TTSAA 2 cut(s) 26, 154
AhlI ACTAGT 1 cut(s) 163
AluBI AGCT 2 cut(s) 129, 287
AluI AGCT 2 cut(s) 129, 287
Alw21I GWGCWC 1 cut(s) 289
AlwI GGATC 2 cut(s) 213, 226
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 65, 278
BalI TGGCCA 1 cut(s) 160
BamHI GGATCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 289
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 56
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 1 cut(s) 164
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 220, 262
Bpu10I CCTNAGC 2 cut(s) 84, 224
BsaAI YACGTR 1 cut(s) 8
Bse118I RCCGGY 1 cut(s) 263
BseMII CTCAG 2 cut(s) 98, 136
BseXI GCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 1 cut(s) 264
BsnI GGCC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 2 cut(s) 109, 218
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 2 cut(s) 97, 135
BspLI GGNNCC 2 cut(s) 220, 262
BspPI GGATC 2 cut(s) 213, 226
BspT107I GGYRCC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 263
BssMI GATC 2 cut(s) 109, 218
BstBAI YACGTR 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 84, 122, 224
BstKTI GATC 2 cut(s) 112, 221
BstMBI GATC 2 cut(s) 109, 218
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSNI TACGTA 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 263
Csp6I GTAC 1 cut(s) 93
CviAII CATG 1 cut(s) 90
CviJI RGCY 4 cut(s) 88, 129, 160, 287
CviKI_1 RGCY 4 cut(s) 88, 129, 160, 287
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 3 cut(s) 84, 122, 224
DpnI GATC 2 cut(s) 111, 220
DpnII GATC 2 cut(s) 109, 218
EaeI YGGCCR 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 287
Eco105I TACGTA 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 1 cut(s) 93
FaiI YATR 4 cut(s) 91, 176, 200, 248
FatI CATG 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 45
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 160
HapII CCGG 1 cut(s) 264
Hin1II CATG 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 127
HpaII CCGG 1 cut(s) 264
HphI GGTGA 2 cut(s) 65, 278
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 15, 38, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 84, 122, 224
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 1 cut(s) 93
Kzo9I GATC 2 cut(s) 109, 218
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 2 cut(s) 267, 277
Lsp1109I GCAGC 1 cut(s) 56
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 8
MalI GATC 2 cut(s) 111, 220
MboI GATC 2 cut(s) 109, 218
MboII GAAGA 4 cut(s) 31, 38, 68, 214
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 160
MnlI CCTC 3 cut(s) 43, 93, 194
Mox20I TGGCCA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 130
MscI TGGCCA 1 cut(s) 160
Msp20I TGGCCA 1 cut(s) 160
MspI CCGG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 2 cut(s) 109, 218
NlaIII CATG 1 cut(s) 93
NlaIV GGNNCC 2 cut(s) 220, 262
PdmI GAANNNNTTC 1 cut(s) 130
PkrI GCNGC 1 cut(s) 46
Ppu21I YACGTR 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 220, 262
PsuI RGATCY 1 cut(s) 218
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SacI GAGCTC 1 cut(s) 289
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 109, 218
SduI GDGCHC 1 cut(s) 289
SetI ASST 7 cut(s) 10, 77, 98, 131, 142, 262, 289
SgeI CNNG 8 cut(s) 28, 88, 102, 109, 116, 149, 176, 276
SnaBI TACGTA 1 cut(s) 8
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 1 cut(s) 289
TaiI ACGT 1 cut(s) 10
TasI AATT 1 cut(s) 148
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.