RLG00000010936

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000203
Physical Location & Seq
Forward (+)
5503582 .. 5506196
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010936

Sequence Viewer

Length: 1152 bp
ATGGTAGCTTCGCCGGCAGTCCCACTGCAGCTCTTAAGAAGTCTAGAAGAGATATCAATTAGGGGTTGTGAAAGTTTGAGAGCTCTGCTCTCCCCTTCAATCGCCAAAGGTCTTGTGAAGCTCCGAATACTAAATATCGAAAGCTGCGAGAAGATTGAAGAGATAGTAGCAGCAGCAGAGGGTGATGAAGAAACAGAGGATGACAACATCTTCCCTCAGCTAACAGTTTTGTGGCTTAAAAATCTACCTAATCTCAGAAGTCTGCTCTCCCTTTCAATCGCCAGAGGTCTTGTGAAGCTCCAAACACTAAGGATCGTTGGCTGCGAGAAGATTGAAGAGATAGTAGCAGCAGCAGTGGGTGATGAAGAAACAGAGGATGACAAAATCTTCCCTCAACTAACAGTTTTGTGGCTTGGAAATCTACCCAATCTCAGAACTCTGCTCTCCCCTTCAATCGCCAGAGGTCTTGTGAAGCTCAAAACACTAAGGATCGTTGGCTGCGAGAAGATTGAAGTGATAGTAGCAGCAGCAAAGGGTGATGAAGAAACAGAGGATGACAACATCTTCCCTCAGCTAACAGTTTTGTGGCTTGGAAATCTACCCAATCTTAGAACTCTGCTCTCCCCTTCAATCGCCAGAGGTCTTGTGAAGCTCCGAACACTACATATTGAAAGCTGCGAGAAGATTGAAGAGATAGTAGCTGCAGCAGAGGGTGATGAAGAAACAGAGGATGACAACATCTTCCCTCAGCTAACAGAGTTGTATCTTAGTAATCTACCCAATCTTAGAACTCTGCTCTCCCCTTCAATCGCCAGAGGTCTTGTGAAGCTCCAAACACTAGAGATAGAAAACTGCGAGAAGATTGAAGAGATAGTTGCAGCAGCAGAGGGTGATGAAGAAATAGAGGATGACAACATCTTCCCTCAGCTAATAGAGTTGTATCTTAGTACTCTTCCAAATCTCAGAAGCTTTTCGCAAGGCAAATATAATTTCAAATGGCCACTACTGAGAGGTATGAGAATCGAAGGATGCTGCAATATGAAGAAGTTTTGTTTCGGATCCGTCAGCATACCAAGCGAAGCGGAAATGTACGTCAGGGATGTTGATGAGAATGTTTTGCAAGAGCAGAATAACAGTAGAAAAGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

384

Amino Acids

42.77

Weight (kDa)

4.64

Isoelectric Point (pI)

76.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 12 - 50 4.6e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 65 - 174 2.3e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 184 - 265 4.7e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_RPS2 PF23247 265 - 349 4.1e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1082
AclWI GGATC 4 cut(s) 320, 497, 1053, 1066
AcoI YGGCCR 1 cut(s) 998
AfaI GTAC 2 cut(s) 949, 1091
AflII CTTAAG 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 85
AlwI GGATC 4 cut(s) 320, 497, 1053, 1066
AoxI GGCC 1 cut(s) 998
Asp700I GAANNNNTTC 1 cut(s) 970
AsuHPI GGTGA 5 cut(s) 194, 371, 548, 725, 902
BalI TGGCCA 1 cut(s) 1000
BamHI GGATCC 1 cut(s) 1058
BanII GRGCYC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 85
BbvCI CCTCAGC 4 cut(s) 216, 570, 747, 924
BfaI CTAG 2 cut(s) 44, 839
BfmI CTRYAG 2 cut(s) 26, 702
BfrI CTTAAG 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 949
BmiI GGNNCC 1 cut(s) 1060
BmsI GCATC 1 cut(s) 1019
BplI GAGNNNNNCTC 2 cut(s) 72, 104
Bpu10I CCTNAGC 4 cut(s) 216, 570, 747, 924
Bse118I RCCGGY 1 cut(s) 13
BseGI GGATG 7 cut(s) 205, 382, 559, 736, 913, 1034, 1105
BseMII CTCAG 8 cut(s) 230, 268, 445, 584, 761, 938, 976, 998
BshFI GGCC 1 cut(s) 1000
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 5
BsnI GGCC 1 cut(s) 1000
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 3 cut(s) 312, 489, 1058
BspACI CCGC 1 cut(s) 1082
BspANI GGCC 1 cut(s) 1000
BspCNI CTCAG 8 cut(s) 229, 267, 444, 583, 760, 937, 975, 999
BspLI GGNNCC 1 cut(s) 1060
BspMAI CTGCAG 2 cut(s) 30, 706
BspPI GGATC 4 cut(s) 320, 497, 1053, 1066
BspTI CTTAAG 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssMI GATC 3 cut(s) 312, 489, 1058
Bst4CI ACNGT 4 cut(s) 226, 403, 580, 1136
Bst6I CTCTTC 6 cut(s) 42, 153, 330, 684, 861, 957
BstAFI CTTAAG 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 15
BstF5I GGATG 7 cut(s) 205, 382, 559, 736, 913, 1034, 1105
BstKTI GATC 3 cut(s) 315, 492, 1061
BstMBI GATC 3 cut(s) 312, 489, 1058
BstMWI GCNNNNNNNGC 2 cut(s) 14, 1074
BstSFI CTRYAG 2 cut(s) 26, 702
BstX2I RGATCY 1 cut(s) 1058
BstYI RGATCY 1 cut(s) 1058
BsuRI GGCC 1 cut(s) 1000
BtsCI GGATG 7 cut(s) 205, 382, 559, 736, 913, 1034, 1105
BtsI GCAGTG 2 cut(s) 23, 360
BtsIMutI CAGTG 2 cut(s) 23, 360
Cac8I GCNNGC 1 cut(s) 15
Cfr10I RCCGGY 1 cut(s) 13
Csp6I GTAC 2 cut(s) 948, 1090
CviQI GTAC 2 cut(s) 948, 1090
DpnI GATC 3 cut(s) 314, 491, 1060
DpnII GATC 3 cut(s) 312, 489, 1058
EaeI YGGCCR 1 cut(s) 998
Eam1104I CTCTTC 6 cut(s) 42, 153, 330, 684, 861, 957
EarI CTCTTC 6 cut(s) 42, 153, 330, 684, 861, 957
Ecl136II GAGCTC 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 85
Eco32I GATATC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 83
EcoRV GATATC 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 85
FaiI YATR 5 cut(s) 666, 987, 1016, 1040, 1070
FaqI GGGAC 1 cut(s) 5
FokI GGATG 7 cut(s) 212, 389, 566, 743, 920, 1041, 1112
FriOI GRGCYC 1 cut(s) 85
FspBI CTAG 2 cut(s) 44, 839
HaeIII GGCC 1 cut(s) 1000
HapII CCGG 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 967
HinfI GANTC 1 cut(s) 1020
HpaII CCGG 1 cut(s) 14
HphI GGTGA 5 cut(s) 194, 371, 548, 725, 902
Hpy188I TCNGA 6 cut(s) 125, 257, 434, 656, 965, 1058
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 5 cut(s) 105, 459, 636, 813, 1019
HpyCH4III ACNGT 4 cut(s) 226, 403, 580, 1136
HpyCH4IV ACGT 1 cut(s) 1092
HpyCH4V TGCA 5 cut(s) 28, 704, 878, 1035, 1120
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 1074
HpySE526I ACGT 1 cut(s) 1092
KroI GCCGGC 1 cut(s) 13
KroNI GCCGGC 1 cut(s) 15
Kzo9I GATC 3 cut(s) 312, 489, 1058
LmnI GCTCC 4 cut(s) 126, 303, 657, 834
LpnPI CCDG 6 cut(s) 27, 295, 472, 649, 826, 1081
LweI GCATC 1 cut(s) 1019
MaeI CTAG 2 cut(s) 44, 839
MaeII ACGT 1 cut(s) 1092
MalI GATC 3 cut(s) 314, 491, 1060
MboI GATC 3 cut(s) 312, 489, 1058
MflI RGATCY 1 cut(s) 1058
MhlI GDGCHC 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 1000
MluCI AATT 2 cut(s) 57, 988
MluNI TGGCCA 1 cut(s) 1000
Mox20I TGGCCA 1 cut(s) 1000
MroNI GCCGGC 1 cut(s) 13
MroXI GAANNNNTTC 1 cut(s) 970
MscI TGGCCA 1 cut(s) 1000
MseI TTAA 2 cut(s) 35, 237
Msp20I TGGCCA 1 cut(s) 1000
MspCI CTTAAG 1 cut(s) 34
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 14, 1074
NaeI GCCGGC 1 cut(s) 15
NdeII GATC 3 cut(s) 312, 489, 1058
NgoMIV GCCGGC 1 cut(s) 13
NlaIV GGNNCC 1 cut(s) 1060
PcsI WCGNNNNNNNCGW 3 cut(s) 144, 321, 498
PdiI GCCGGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 970
PfeI GAWTC 1 cut(s) 1020
Psp124BI GAGCTC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 1060
PstI CTGCAG 2 cut(s) 30, 706
PsuI RGATCY 1 cut(s) 1058
RsaI GTAC 2 cut(s) 949, 1091
RsaNI GTAC 2 cut(s) 948, 1090
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 35, 237
Sau3AI GATC 3 cut(s) 312, 489, 1058
ScaI AGTACT 1 cut(s) 949
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 1 cut(s) 1019
SfcI CTRYAG 2 cut(s) 26, 702
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 2 cut(s) 57, 988
SsiI CCGC 1 cut(s) 1082
SspMI CTAG 2 cut(s) 44, 839
SstI GAGCTC 1 cut(s) 85
TaaI ACNGT 4 cut(s) 226, 403, 580, 1136
TaiI ACGT 1 cut(s) 1095
TaqI TCGA 2 cut(s) 138, 1023
TasI AATT 2 cut(s) 57, 988
TatI WGTACW 1 cut(s) 947
TfiI GAWTC 1 cut(s) 1020
Tru1I TTAA 2 cut(s) 35, 237
Tru9I TTAA 2 cut(s) 35, 237
TscAI CASTG 2 cut(s) 30, 360
TspDTI ATGAA 6 cut(s) 201, 378, 555, 732, 909, 1055
TspGWI ACGGA 1 cut(s) 1051
TspRI CASTG 2 cut(s) 30, 360
Vha464I CTTAAG 1 cut(s) 34
XbaI TCTAGA 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 970
XspI CTAG 2 cut(s) 44, 839
ZrmI AGTACT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.