Rh5CG440700

Disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000203
Physical Location & Seq
Reverse (-)
61161753 .. 61172790
11038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG440700.1

Sequence Viewer

Length: 546 bp
ATGATTTTTAATGGTGAGCTGCCGACGGGGTCTCTCAAGGAAATAAAACATTTGGAATTAAATTGTCTACCTGCATTGAAATATATTTGGAAGACCAAGTGTCAGTCTGAATTGGGTCTCTGGAGAAACATTCTAGGACCTGTTCAAGTGCTGAGAATACTGTACTGCTCCTCGTTGGAAAAGATTTTTGCCTATGAAGATGATGAGGAAGTGTTCAGCTTCCAAAGTCTCACAGAGTTGACTCTCTCAGATCTACCAAGCTTCACTGGGATAAGAAAAAATATCTCCAACTCTCCAAGGGGTCGGACAGGCTACCAGAAGACATCAGCCCGGAACAATCTGACGTCATCAAACAACCTCTATTCGACACCAAGGTATTTGTCCTTTTCTTTTTTGCTTCTCCAACGTCAGTCATCCGACACAAAGTATGGTTGGAGGATCAGTGCACCTAATGTAACAGCCGACACAACTCATCCGTCTACAAGATCCTGCAAACACGACGCAATCCACGCTCTTAACGCAGCTCTTCTTGACACATGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

181

Amino Acids

20.44

Weight (kDa)

8.81

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000203)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02740 FvH4_1g02750 FvH4_2g17380 FvH4_2g17381 FvH4_2g17400 FvH4_2g17410 FvH4_2g17420 FvH4_2g36800 FvH4_2g36802 FvH4_2g36810 FvH4_2g36830 FvH4_2g36840 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36850 FvH4_2g36860 FvH4_4g35200 FvH4_4g35200 FvH4_4g35200 FvH4_6g02712 FvH4_6g02712 FvH4_6g02713 FvH4_6g02760 FvH4_6g02790 FvH4_6g02820
prunus_persica Prupe.8G185600_v2.0.a1 Prupe.8G185700_v2.0.a1 Prupe.8G185800_v2.0.a1
pyrus_communis pycom05g14750
rosa_chinensis RchiOBHm_Chr1g0341391 RchiOBHm_Chr5g0061651 RchiOBHm_Chr5g0061661 RchiOBHm_Chr5g0080761 RchiOBHm_Chr6g0281031 RchiOBHm_Chr6g0282051 RchiOBHm_Chr6g0304941
rosa_laevigata RLG00000003533 RLG00000005089 RLG00000008660 RLG00000010934 RLG00000010935 RLG00000010936 RLG00000010937 RLG00000012912 RLG00000012917 RLG00000013003 RLG00000013004 RLG00000035489 RLG00000035491 RLG00000035492
rosa_multiflora Rmu_co8167864.1_g000001 Rmu_sc0000014.1_g000008 Rmu_sc0000014.1_g000011 Rmu_sc0000014.1_g000012 Rmu_sc0000047.1_g000008 Rmu_sc0000301.1_g000009 Rmu_sc0000569.1_g000011 Rmu_sc0000569.1_g000020 Rmu_sc0001700.1_g000009 Rmu_sc0001700.1_g000016 Rmu_sc0001700.1_g000032 Rmu_sc0001700.1_g000044 Rmu_sc0002720.1_g000017 Rmu_sc0005149.1_g000009 Rmu_sc0005210.1_g000001 Rmu_sc0009256.1_g000004 Rmu_sc0012869.1_g000004 Rmu_sc0016179.1_g000008 Rmu_sc0016179.1_g000009 Rmu_sc0018903.1_g000001 Rmu_sc0018903.1_g000003 Rmu_sc0024112.1_g000001 Rmu_sc0030824.1_g000001 Rmu_sc0036328.1_g000001 Rmu_sc0041575.1_g000001 Rmu_ssc0000091.1_g000011 Rmu_ssc0000173.1_g000025
rosa_roxburghii Rroxscaffold_1G00019090 Rroxscaffold_3G00270850 Rroxscaffold_3G00270870 Rroxscaffold_4G00312030 Rroxscaffold_7G00163330 Rroxscaffold_7G00186580 Rroxscaffold_7G00187370
rosa_rugosa Rorug01G0156700.1 Rorug01G0156800.1 Rorug01G0156900.1 Rorug03G0141600 Rorug03G0141700 Rorug03G0141800 Rorug04G0084700 Rorug04G0084700 Rorug05G0298800 Rorug06G0145000 Rorug06G0145200 Rorug06G0336400 Rorug06G0336400 Rorug06G0451600 Rorug06G0451800
rosa_samantha Rh1AG171900 Rh1BG139600 Rh1CG159700 Rh1CG159800 Rh1CG159900 Rh1DG172000 Rh4AG149300 Rh4BG146200 Rh4CG156500 Rh4DG142300 Rh5AG403900 Rh5BG416500 Rh5CG440700 Rh5CG440800 Rh5CG441000 Rh5CG441100 Rh5DG430500 Rh5DG430700 Rh6AG250300 Rh6AG258200 Rh6AG447600 Rh6BG252600 Rh6BG261200 Rh6BG261700 Rh6BG453400 Rh6BG453500 Rh6BG453700 Rh6CG253000 Rh6CG260100 Rh6CG260500 Rh6CG461200 Rh6DG244700 Rh6DG252500 Rh6DG448200 Rh7AG055000 Rh7AG055100 Rh7AG055200 Rh7BG054500 Rh7BG054600 Rh7CG055900 Rh7DG054600 Rh7DG054700
rosa_wichuraiana Rw0G009830 Rw0G014970 Rw1G014320 Rw5G037960 Rw6G021650 Rw6G021720 Rw6G022330 Rw6G022350 Rw6G038980 Rw7G004490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
Acc36I ACCTGC 1 cut(s) 79
AccI GTMKAC 2 cut(s) 67, 479
AclWI GGATC 2 cut(s) 446, 480
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 2 cut(s) 79, 146
AhdI GACNNNNNGTC 1 cut(s) 99
AluBI AGCT 4 cut(s) 19, 219, 261, 524
AluI AGCT 4 cut(s) 19, 219, 261, 524
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 3 cut(s) 36, 122, 233
Alw44I GTGCAC 1 cut(s) 444
AlwI GGATC 2 cut(s) 446, 480
ApaLI GTGCAC 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 19, 521
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 26
AvaII GGWCC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 448
BbsI GAAGAC 2 cut(s) 98, 326
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 6, 533
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 3 cut(s) 36, 122, 233
BfaI CTAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 79
BglII AGATCT 1 cut(s) 250
BisI GCNGC 2 cut(s) 20, 522
BlsI GCNGC 2 cut(s) 21, 523
Bme1390I CCNGG 1 cut(s) 331
Bme18I GGWCC 1 cut(s) 137
BmeRI GACNNNNNGTC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 331
BmrI ACTGGG 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 276
BpiI GAAGAC 2 cut(s) 98, 326
BpmI CTGGAG 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 344
BsaI GGTCTC 2 cut(s) 36, 122
BsaJI CCNNGG 2 cut(s) 296, 371
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bse1I ACTGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 296, 371
BseGI GGATG 2 cut(s) 413, 472
BseMII CTCAG 2 cut(s) 143, 261
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 448
BseXI GCAGC 2 cut(s) 6, 533
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 1 cut(s) 331
BsmAI GTCTC 3 cut(s) 36, 122, 233
Bso31I GGTCTC 2 cut(s) 36, 122
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 3 cut(s) 250, 438, 485
BspCNI CTCAG 2 cut(s) 144, 260
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 2 cut(s) 446, 480
BspQI GCTCTTC 1 cut(s) 531
BspTNI GGTCTC 2 cut(s) 36, 122
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 296, 371
BssMI GATC 3 cut(s) 250, 438, 485
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 2 cut(s) 296, 371
Bst4CI ACNGT 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 531
BstACI GRCGYC 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 152, 247
BstF5I GGATG 2 cut(s) 413, 472
BstKTI GATC 3 cut(s) 253, 441, 488
BstMAI GTCTC 3 cut(s) 36, 122, 233
BstMBI GATC 3 cut(s) 250, 438, 485
BstMWI GCNNNNNNNGC 2 cut(s) 509, 518
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 1 cut(s) 329
BstSLI GKGCMC 1 cut(s) 448
BstV1I GCAGC 2 cut(s) 6, 533
BstV2I GAAGAC 2 cut(s) 98, 326
BstX2I RGATCY 2 cut(s) 250, 485
BstYI RGATCY 2 cut(s) 250, 485
BtsCI GGATG 2 cut(s) 413, 472
BtsIMutI CAGTG 2 cut(s) 264, 448
BveI ACCTGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 509
Csp6I GTAC 1 cut(s) 163
CviAII CATG 1 cut(s) 537
CviJI RGCY 7 cut(s) 19, 219, 261, 312, 329, 461, 524
CviKI_1 RGCY 7 cut(s) 19, 219, 261, 312, 329, 461, 524
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 2 cut(s) 152, 247
DpnI GATC 3 cut(s) 252, 440, 487
DpnII GATC 3 cut(s) 250, 438, 485
DriI GACNNNNNGTC 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 531
Eam1105I GACNNNNNGTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 296, 371
Eco31I GGTCTC 2 cut(s) 36, 122
Eco47I GGWCC 1 cut(s) 137
EcoO109I RGGNCCY 1 cut(s) 137
EcoT14I CCWWGG 2 cut(s) 296, 371
ErhI CCWWGG 2 cut(s) 296, 371
FaeI CATG 1 cut(s) 540
FaiI YATR 4 cut(s) 84, 195, 429, 538
FatI CATG 1 cut(s) 536
FblI GTMKAC 2 cut(s) 67, 479
Fnu4HI GCNGC 2 cut(s) 20, 522
FokI GGATG 2 cut(s) 400, 459
Fsp4HI GCNGC 2 cut(s) 20, 522
FspBI CTAG 1 cut(s) 134
GluI GCNGC 2 cut(s) 20, 522
GsuI CTGGAG 1 cut(s) 142
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 1 cut(s) 540
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 331
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 4 cut(s) 68, 240, 446, 480
Hpy188I TCNGA 5 cut(s) 109, 250, 306, 342, 418
Hpy188III TCNNGA 2 cut(s) 121, 530
Hpy8I GTNNAC 4 cut(s) 68, 240, 446, 480
Hpy99I CGWCG 2 cut(s) 28, 503
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 2 cut(s) 344, 406
HpyCH4V TGCA 3 cut(s) 74, 446, 492
HpyF10VI GCNNNNNNNGC 2 cut(s) 509, 518
HpyF3I CTNAG 2 cut(s) 152, 247
HpySE526I ACGT 2 cut(s) 344, 406
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 1 cut(s) 540
Kzo9I GATC 3 cut(s) 250, 438, 485
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 8 cut(s) 84, 106, 153, 252, 294, 329, 344, 502
Lsp1109I GCAGC 2 cut(s) 6, 533
MaeI CTAG 1 cut(s) 134
MaeII ACGT 2 cut(s) 344, 406
MaeIII GTNAC 1 cut(s) 454
MalI GATC 3 cut(s) 252, 440, 487
MboI GATC 3 cut(s) 250, 438, 485
MboII GAAGA 4 cut(s) 103, 209, 331, 518
MflI RGATCY 2 cut(s) 250, 485
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 3 cut(s) 56, 61, 110
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 6 cut(s) 156, 284, 312, 413, 427, 441
MnlI CCTC 4 cut(s) 181, 199, 368, 429
MseI TTAA 4 cut(s) 9, 59, 516, 544
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 331
MwoI GCNNNNNNNGC 2 cut(s) 509, 518
NciI CCSGG 1 cut(s) 331
NdeII GATC 3 cut(s) 250, 438, 485
NlaIII CATG 1 cut(s) 540
NspI RCATGY 1 cut(s) 540
PciSI GCTCTTC 1 cut(s) 531
PflFI GACNNNGTC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 21, 523
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 137
Psp5II RGGWCCY 1 cut(s) 137
PspPI GGNCC 1 cut(s) 137
PspPPI RGGWCCY 1 cut(s) 137
PsuI RGATCY 2 cut(s) 250, 485
PsyI GACNNNGTC 1 cut(s) 28
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 531
SaqAI TTAA 4 cut(s) 9, 59, 516, 544
SatI GCNGC 2 cut(s) 20, 522
Sau3AI GATC 3 cut(s) 250, 438, 485
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 1 cut(s) 448
SinI GGWCC 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 3 cut(s) 56, 61, 110
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 2 cut(s) 296, 371
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 2 cut(s) 347, 409
TaqI TCGA 1 cut(s) 365
TasI AATT 3 cut(s) 56, 61, 110
TatI WGTACW 1 cut(s) 162
Tru1I TTAA 4 cut(s) 9, 59, 516, 544
Tru9I TTAA 4 cut(s) 9, 59, 516, 544
TscAI CASTG 2 cut(s) 271, 448
TseI GCWGC 2 cut(s) 19, 521
TspDTI ATGAA 1 cut(s) 210
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 2 cut(s) 271, 448
Tth111I GACNNNGTC 1 cut(s) 28
VneI GTGCAC 1 cut(s) 444
VpaK11BI GGWCC 1 cut(s) 137
XceI RCATGY 1 cut(s) 540
XmiI GTMKAC 2 cut(s) 67, 479
XspI CTAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.