Rmu_sc0011075.1_g000010

Acyl-coenzyme A thioesterase 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011075.1
OG0018167
Physical Location & Seq
Forward (+)
47031 .. 49676
2646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011075.1_g000010.1.cds

Sequence Viewer

Length: 1005 bp
atggcaacccttcttgatgcaagcgggcaggaggcgaggttgacaaggcggggtattgcgcgcaggttctgggcagtaggcagggaggccgatcgtggaggccggaagaatgatttggagaggccgatctgtggggttgttgtcgtggcggaggggggggggctggctggaggccgcagtgctgcagatttctgtgggtggacgcaggggcagtgggctgtcttggatgatttgggtacccaagcgcagtgggctgcaaggatgctgtggtgctcagccggagaggcggaggtgaggccggaccatcactcttcgacccaacctaaagattgcttcccatcacttcagggttcttccattcctatctcttcccaccacgcttcaatcccaaaaccaactcgggcctcacgtaacgagggcagcgaagaagagcaggctagcggtgggaggcgctggtggctgtattgggaggccaatttgaagactggaagccaaacaggccgaaatgcgactagggttacggcgaagagggtggcggagcttggagataggatagggagtgggattgagcttgagggacggacatggagcgaagaaggatttgaatttgggggtggggggtctcacttatctccttcatctctctctcaatctttgatttcccctaatcttttcaatttcaaaatccgatgtgtgcaggtattgctatgtggaatgttccactcgccggtgacacaggcactgtgggaagtcacgtctctgatgtttgaaaggctcttggacccaccagtagacgctcctccgcagagccaattgctaaagaagagtccatcacagagcaggactacaattccctacaatttctctactgattttatactgagggagcagtatggggatccttggaatgaggtcagaattgggaaactgcttgaagaccttgatgctttagctggaatcatttctgttaaggtaacactttttagtcttcctgtgtttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

334

Amino Acids

36.6

Weight (kDa)

6.61

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018167)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0496731 RchiOBHm_Chr6g0282071
rosa_laevigata RLG00000012911 RLG00000012915 RLG00000036813
rosa_multiflora Rmu_sc0001700.1_g000034 Rmu_sc0005149.1_g000003 Rmu_sc0011075.1_g000010
rosa_rugosa Rorug06G0145200
rosa_samantha Rh6CG260400
rosa_wichuraiana Rw6G022340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 54, 688
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 1 cut(s) 792
AccII CGCG 1 cut(s) 61
AciI CCGC 8 cut(s) 24, 49, 149, 175, 287, 441, 536, 803
AclWI GGATC 2 cut(s) 893, 906
AcsI RAATTY 1 cut(s) 605
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 2 cut(s) 131, 727
AgsI TTSAA 7 cut(s) 384, 481, 605, 676, 682, 770, 935
AjiI CACGTC 1 cut(s) 756
AjuI GAANNNNNNNTTGG 2 cut(s) 98, 130
AluBI AGCT 3 cut(s) 541, 571, 953
AluI AGCT 3 cut(s) 541, 571, 953
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 2 cut(s) 627, 762
AlwI GGATC 2 cut(s) 893, 906
AlwNI CAGNNNCTG 2 cut(s) 69, 742
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 8 cut(s) 87, 100, 122, 172, 296, 402, 471, 499
ApeKI GCWGC 3 cut(s) 182, 254, 420
ApoI RAATTY 1 cut(s) 605
Asp700I GAANNNNTTC 1 cut(s) 961
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 4 cut(s) 61, 63, 247, 453
AspS9I GGNCC 3 cut(s) 301, 402, 781
AsuHPI GGTGA 2 cut(s) 304, 742
AsuNHI GCTAGC 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 2 cut(s) 301, 781
BamHI GGATCC 1 cut(s) 898
BanI GGYRCC 1 cut(s) 236
BbsI GAAGAC 3 cut(s) 488, 942, 980
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 3 cut(s) 169, 241, 432
BccI CCATC 3 cut(s) 312, 346, 838
BceAI ACGGC 1 cut(s) 537
BcoDI GTCTC 2 cut(s) 627, 762
BfaI CTAG 2 cut(s) 438, 513
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 454
BfuAI ACCTGC 2 cut(s) 54, 688
BglI GCCNNNNNGGC 2 cut(s) 284, 498
BisI GCNGC 4 cut(s) 175, 183, 255, 421
BlpI GCTNAGC 1 cut(s) 274
BlsI GCNGC 4 cut(s) 176, 184, 256, 422
Bme18I GGWCC 2 cut(s) 301, 781
BmeT110I CYCGRG 1 cut(s) 399
BmgBI CACGTC 1 cut(s) 756
BmgT120I GGNCC 3 cut(s) 301, 402, 781
BmiI GGNNCC 3 cut(s) 238, 783, 900
BmsI GCATC 3 cut(s) 7, 252, 934
BmtI GCTAGC 1 cut(s) 441
BpiI GAAGAC 3 cut(s) 488, 942, 980
BpmI CTGGAG 1 cut(s) 189
Bpu1102I GCTNAGC 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 627
BsaJI CCNNGG 1 cut(s) 902
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 727
Bse118I RCCGGY 1 cut(s) 727
Bse1I ACTGG 2 cut(s) 490, 788
BseDI CCNNGG 1 cut(s) 902
BseGI GGATG 2 cut(s) 232, 267
BseLI CCNNNNNNNGG 2 cut(s) 131, 727
BseMII CTCAG 2 cut(s) 288, 872
BseNI ACTGG 2 cut(s) 490, 788
BsePI GCGCGC 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 789
BseXI GCAGC 3 cut(s) 169, 241, 432
BsgI GTGCAG 1 cut(s) 716
Bsh1236I CGCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 8 cut(s) 89, 102, 124, 174, 298, 404, 473, 501
BshNI GGYRCC 1 cut(s) 236
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 275
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 4 cut(s) 103, 279, 299, 728
BslFI GGGAC 1 cut(s) 591
BslI CCNNNNNNNGG 2 cut(s) 131, 727
BsmAI GTCTC 2 cut(s) 627, 762
BsmBI CGTCTC 1 cut(s) 762
BsmFI GGGAC 1 cut(s) 591
BsnI GGCC 8 cut(s) 89, 102, 124, 174, 298, 404, 473, 501
Bso31I GGTCTC 1 cut(s) 627
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 3 cut(s) 91, 126, 898
Bsp1720I GCTNAGC 1 cut(s) 274
BspACI CCGC 8 cut(s) 24, 49, 149, 175, 287, 441, 536, 803
BspANI GGCC 8 cut(s) 89, 102, 124, 174, 298, 404, 473, 501
BspCNI CTCAG 2 cut(s) 287, 873
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 3 cut(s) 238, 783, 900
BspMAI CTGCAG 1 cut(s) 187
BspMI ACCTGC 2 cut(s) 54, 688
BspOI GCTAGC 1 cut(s) 441
BspPI GGATC 2 cut(s) 893, 906
BspQI GCTCTTC 1 cut(s) 423
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 627
BsrFI RCCGGY 1 cut(s) 727
BsrI ACTGG 2 cut(s) 490, 788
BssAI RCCGGY 1 cut(s) 727
BssECI CCNNGG 1 cut(s) 902
BssHII GCGCGC 1 cut(s) 59
BssMI GATC 3 cut(s) 91, 126, 898
BssT1I CCWWGG 1 cut(s) 902
Bst4CI ACNGT 1 cut(s) 744
Bst6I CTCTTC 5 cut(s) 316, 373, 423, 521, 818
BstAPI GCANNNNNTGC 1 cut(s) 703
BstBAI YACGTR 1 cut(s) 410
BstC8I GCNNGC 6 cut(s) 22, 26, 61, 165, 435, 439
BstDEI CTNAG 2 cut(s) 274, 881
BstF5I GGATG 2 cut(s) 232, 267
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 454
BstHHI GCGC 4 cut(s) 61, 63, 247, 453
BstKTI GATC 3 cut(s) 94, 129, 901
BstMAI GTCTC 2 cut(s) 627, 762
BstMBI GATC 3 cut(s) 91, 126, 898
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 5 cut(s) 251, 284, 457, 498, 703
BstSFI CTRYAG 1 cut(s) 183
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 3 cut(s) 169, 241, 432
BstV2I GAAGAC 3 cut(s) 488, 942, 980
BstX2I RGATCY 1 cut(s) 898
BstYI RGATCY 1 cut(s) 898
BsuRI GGCC 8 cut(s) 89, 102, 124, 174, 298, 404, 473, 501
BtrI CACGTC 1 cut(s) 756
BtsCI GGATG 2 cut(s) 232, 267
BtsI GCAGTG 3 cut(s) 184, 218, 254
BtsIMutI CAGTG 4 cut(s) 184, 218, 254, 740
BveI ACCTGC 2 cut(s) 54, 688
Cac8I GCNNGC 6 cut(s) 22, 26, 61, 165, 435, 439
CaiI CAGNNNCTG 2 cut(s) 69, 742
CfoI GCGC 4 cut(s) 61, 63, 247, 453
Cfr10I RCCGGY 1 cut(s) 727
Cfr13I GGNCC 3 cut(s) 301, 402, 781
CseI GACGC 2 cut(s) 211, 803
Csp6I GTAC 1 cut(s) 237
CspCI CAANNNNNGTGG 2 cut(s) 230, 265
CviAII CATG 1 cut(s) 585
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 2 cut(s) 274, 881
DpnI GATC 3 cut(s) 93, 128, 900
DpnII GATC 3 cut(s) 91, 126, 898
Eam1104I CTCTTC 5 cut(s) 316, 373, 423, 521, 818
EarI CTCTTC 5 cut(s) 316, 373, 423, 521, 818
EciI GGCGGA 3 cut(s) 164, 302, 551
Eco130I CCWWGG 1 cut(s) 902
Eco31I GGTCTC 1 cut(s) 627
Eco47I GGWCC 2 cut(s) 301, 781
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 399
EcoT14I CCWWGG 1 cut(s) 902
ErhI CCWWGG 1 cut(s) 902
Esp3I CGTCTC 1 cut(s) 762
FaeI CATG 1 cut(s) 588
FaiI YATR 4 cut(s) 586, 709, 878, 894
FaqI GGGAC 1 cut(s) 591
FatI CATG 1 cut(s) 584
FauI CCCGC 2 cut(s) 17, 42
FblI GTMKAC 1 cut(s) 792
Fnu4HI GCNGC 4 cut(s) 175, 183, 255, 421
FokI GGATG 2 cut(s) 239, 274
Fsp4HI GCNGC 4 cut(s) 175, 183, 255, 421
FspBI CTAG 2 cut(s) 438, 513
GlaI GCGC 4 cut(s) 60, 62, 246, 452
GluI GCNGC 4 cut(s) 175, 183, 255, 421
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 454
HaeIII GGCC 8 cut(s) 89, 102, 124, 174, 298, 404, 473, 501
HapII CCGG 4 cut(s) 103, 279, 299, 728
HgaI GACGC 2 cut(s) 211, 803
HhaI GCGC 4 cut(s) 61, 63, 247, 453
Hin1II CATG 1 cut(s) 588
Hin6I GCGC 4 cut(s) 59, 61, 245, 451
HinP1I GCGC 4 cut(s) 59, 61, 245, 451
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 826, 957
HpaII CCGG 4 cut(s) 103, 279, 299, 728
HphI GGTGA 2 cut(s) 304, 742
Hpy166II GTNNAC 3 cut(s) 42, 201, 793
Hpy188I TCNGA 3 cut(s) 689, 762, 917
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 3 cut(s) 42, 201, 793
HpyAV CCTTC 3 cut(s) 20, 590, 645
HpyCH4III ACNGT 1 cut(s) 744
HpyCH4IV ACGT 2 cut(s) 409, 755
HpyCH4V TGCA 4 cut(s) 20, 185, 257, 697
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 284, 457, 498, 703
HpyF3I CTNAG 2 cut(s) 274, 881
HpySE526I ACGT 2 cut(s) 409, 755
Hsp92II CATG 1 cut(s) 588
HspAI GCGC 4 cut(s) 59, 61, 245, 451
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 3 cut(s) 91, 126, 898
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 4 cut(s) 538, 588, 802, 886
Lsp1109I GCAGC 3 cut(s) 169, 241, 432
LweI GCATC 3 cut(s) 7, 252, 934
MaeI CTAG 2 cut(s) 438, 513
MaeII ACGT 2 cut(s) 409, 755
MaeIII GTNAC 5 cut(s) 410, 517, 730, 751, 973
MalI GATC 3 cut(s) 93, 128, 900
MboI GATC 3 cut(s) 91, 126, 898
MfeI CAATTG 1 cut(s) 812
MflI RGATCY 1 cut(s) 898
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 7 cut(s) 475, 605, 676, 812, 849, 859, 918
MlyI GAGTC 1 cut(s) 835
MroXI GAANNNNTTC 1 cut(s) 961
MseI TTAA 1 cut(s) 969
MspI CCGG 4 cut(s) 103, 279, 299, 728
MunI CAATTG 1 cut(s) 812
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 5 cut(s) 251, 284, 457, 498, 703
NdeII GATC 3 cut(s) 91, 126, 898
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 1 cut(s) 588
NlaIV GGNNCC 3 cut(s) 238, 783, 900
NmuCI GTSAC 2 cut(s) 730, 751
PauI GCGCGC 1 cut(s) 59
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 2 cut(s) 406, 420
PdmI GAANNNNTTC 1 cut(s) 961
PfeI GAWTC 1 cut(s) 957
PkrI GCNGC 4 cut(s) 176, 184, 256, 422
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 1 cut(s) 834
PpsI GAGTC 1 cut(s) 834
Ppu21I YACGTR 1 cut(s) 410
PspN4I GGNNCC 3 cut(s) 238, 783, 900
PspPI GGNCC 3 cut(s) 301, 402, 781
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 69, 742
PsuI RGATCY 1 cut(s) 898
PteI GCGCGC 1 cut(s) 59
PvuI CGATCG 1 cut(s) 94
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 1 cut(s) 969
SatI GCNGC 4 cut(s) 175, 183, 255, 421
Sau3AI GATC 3 cut(s) 91, 126, 898
Sau96I GGNCC 3 cut(s) 301, 402, 781
SchI GAGTC 1 cut(s) 835
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 3 cut(s) 7, 252, 934
SfcI CTRYAG 1 cut(s) 183
SgrAI CRCCGGYG 1 cut(s) 727
SinI GGWCC 2 cut(s) 301, 781
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 7 cut(s) 475, 605, 676, 812, 849, 859, 918
SsiI CCGC 8 cut(s) 24, 49, 149, 175, 287, 441, 536, 803
SspMI CTAG 2 cut(s) 438, 513
StyI CCWWGG 1 cut(s) 902
TaaI ACNGT 1 cut(s) 744
TaiI ACGT 2 cut(s) 412, 758
TaqI TCGA 1 cut(s) 314
TasI AATT 7 cut(s) 475, 605, 676, 812, 849, 859, 918
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 957
Tru1I TTAA 1 cut(s) 969
Tru9I TTAA 1 cut(s) 969
TscAI CASTG 4 cut(s) 184, 218, 254, 747
TseFI GTSAC 2 cut(s) 730, 751
TseI GCWGC 3 cut(s) 182, 254, 420
Tsp45I GTSAC 2 cut(s) 730, 751
TspDTI ATGAA 1 cut(s) 627
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 4 cut(s) 184, 218, 254, 747
VpaK11BI GGWCC 2 cut(s) 301, 781
XapI RAATTY 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 792
XmnI GAANNNNTTC 1 cut(s) 961
XspI CTAG 2 cut(s) 438, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.