Rw6G022340

Acyl-coenzyme A thioesterase 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0018167
Physical Location & Seq
Reverse (-)
44183601 .. 44185583
1983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022340.1

Sequence Viewer

Length: 531 bp
ATGTACCCAAATTCATCTCCTTCCAATTCCAATTTCAACACCACCATTCCGGTAGTTGCAACCCTCCCCGCTCTCGGGTCGGACTCTTTGACCCGGAAGCCCATCAGCTTGTGGCCCGGAATGTTCCACTCGCCGGTGACACAGGCACTGTGGGAAGCGAGGTCTCACATGTTCGAGAGGCTCTTGGACCCACCAGCAGACGCTCCTCCACAGAGCCAATTGCTAAACAAGACTCCGTCTCAGAGCAGGACTACAATTCTGTACAATTTCTCTACTGATTTTATACTGAGGGAGCAGTACAGGGATCCTTGGAATGAGGTCCGAATTGGGAAACTGCTTGAAGACCTTGATGCTTTAGCTGGAACCATTTCTGTCAAGCAGTTCAGTGATGTGATTAAAGCTGAGGCAACGGCTCAGACGGTTGATGACTCCTTAGAGAAGGGAATTTTGGGACTGTTGCCCATCTTGGTCCTCCCCCGGAGCTCGGATTTCACACCACACAATATTCTGAGGATTCTACTCGGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

176

Amino Acids

19.54

Weight (kDa)

5.55

Isoelectric Point (pI)

58.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018167)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0496731 RchiOBHm_Chr6g0282071
rosa_laevigata RLG00000012911 RLG00000012915 RLG00000036813
rosa_multiflora Rmu_sc0001700.1_g000034 Rmu_sc0005149.1_g000003 Rmu_sc0011075.1_g000010
rosa_rugosa Rorug06G0145200
rosa_samantha Rh6CG260400
rosa_wichuraiana Rw6G022340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 71
AciI CCGC 1 cut(s) 69
AclWI GGATC 2 cut(s) 299, 312
AcsI RAATTY 2 cut(s) 10, 444
AfaI GTAC 3 cut(s) 5, 263, 299
AfiI CCNNNNNNNGG 4 cut(s) 74, 75, 133, 484
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 37, 341
AjuI GAANNNNNNNTTGG 4 cut(s) 17, 49, 431, 463
AluBI AGCT 4 cut(s) 108, 359, 401, 483
AluI AGCT 4 cut(s) 108, 359, 401, 483
Alw21I GWGCWC 1 cut(s) 485
Alw26I GTCTC 2 cut(s) 168, 243
AlwI GGATC 2 cut(s) 299, 312
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 10, 444
Asp700I GAANNNNTTC 1 cut(s) 367
AspS9I GGNCC 4 cut(s) 114, 187, 319, 469
AsuC2I CCSGG 3 cut(s) 94, 117, 478
AsuHPI GGTGA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 3 cut(s) 187, 319, 469
BamHI GGATCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 485
BbvCI CCTCAGC 1 cut(s) 402
BccI CCATC 2 cut(s) 110, 470
BceAI ACGGC 1 cut(s) 426
BcnI CCSGG 3 cut(s) 94, 117, 478
BcoDI GTCTC 2 cut(s) 168, 243
Bme1390I CCNGG 3 cut(s) 94, 117, 478
Bme18I GGWCC 3 cut(s) 187, 319, 469
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 4 cut(s) 114, 187, 319, 469
BmiI GGNNCC 3 cut(s) 189, 306, 364
BmrFI CCNGG 3 cut(s) 94, 117, 478
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 402
BpuMI CCSGG 3 cut(s) 94, 117, 478
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 308, 476
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 75, 133, 484
Bse118I RCCGGY 1 cut(s) 133
BseDI CCNNGG 2 cut(s) 308, 476
BseLI CCNNNNNNNGG 4 cut(s) 74, 75, 133, 484
BseMII CTCAG 5 cut(s) 254, 278, 393, 428, 500
BseRI GAGGAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 485
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 5 cut(s) 50, 94, 117, 134, 478
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 4 cut(s) 74, 75, 133, 484
BsmAI GTCTC 2 cut(s) 168, 243
BsmBI CGTCTC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 485
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 5 cut(s) 253, 279, 394, 427, 501
BspLI GGNNCC 3 cut(s) 189, 306, 364
BspPI GGATC 2 cut(s) 299, 312
BspTNI GGTCTC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 133
BsrGI TGTACA 1 cut(s) 261
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 308, 476
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 3 cut(s) 150, 421, 456
BstAUI TGTACA 1 cut(s) 261
BstDEI CTNAG 6 cut(s) 240, 287, 402, 414, 433, 509
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 168, 243
BstMBI GATC 1 cut(s) 304
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 3 cut(s) 92, 115, 476
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 146, 391
CaiI CAGNNNCTG 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 4 cut(s) 114, 187, 319, 469
CseI GACGC 1 cut(s) 209
Csp6I GTAC 3 cut(s) 4, 262, 298
CviAII CATG 1 cut(s) 169
CviQI GTAC 3 cut(s) 4, 262, 298
DdeI CTNAG 6 cut(s) 240, 287, 402, 414, 433, 509
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Ecl136II GAGCTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 485
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 3 cut(s) 187, 319, 469
Eco53kI GAGCTC 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 485
ErhI CCWWGG 1 cut(s) 308
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 170, 284
FaqI GGGAC 1 cut(s) 465
FatI CATG 1 cut(s) 168
FauI CCCGC 1 cut(s) 76
FriOI GRGCYC 1 cut(s) 485
HaeIII GGCC 1 cut(s) 115
HapII CCGG 5 cut(s) 50, 94, 117, 134, 478
HgaI GACGC 1 cut(s) 209
Hin1II CATG 1 cut(s) 172
HinfI GANTC 4 cut(s) 83, 232, 428, 514
HpaII CCGG 5 cut(s) 50, 94, 117, 134, 478
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 6 cut(s) 82, 243, 323, 417, 487, 510
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 30, 433
HpyCH4III ACNGT 3 cut(s) 150, 421, 456
HpyCH4V TGCA 1 cut(s) 59
HpyF3I CTNAG 6 cut(s) 240, 287, 402, 414, 433, 509
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 3 cut(s) 208, 292, 480
LweI GCATC 1 cut(s) 340
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 306
MbiI CCGCTC 1 cut(s) 71
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 353
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 485
MluCI AATT 8 cut(s) 10, 25, 31, 218, 255, 265, 324, 444
MlyI GAGTC 3 cut(s) 77, 226, 422
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 9 cut(s) 74, 153, 171, 216, 282, 310, 397, 482, 504
MroXI GAANNNNTTC 1 cut(s) 367
MseI TTAA 1 cut(s) 396
MspI CCGG 5 cut(s) 50, 94, 117, 134, 478
MspR9I CCNGG 3 cut(s) 94, 117, 478
MunI CAATTG 1 cut(s) 218
NciI CCSGG 3 cut(s) 94, 117, 478
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 3 cut(s) 189, 306, 364
NmeAIII GCCGAG 1 cut(s) 501
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 172
PciI ACATGT 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 514
PflFI GACNNNGTC 1 cut(s) 235
PleI GAGTC 3 cut(s) 77, 226, 422
PpsI GAGTC 3 cut(s) 77, 226, 422
PscI ACATGT 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 485
PspN4I GGNNCC 3 cut(s) 189, 306, 364
PspPI GGNCC 4 cut(s) 114, 187, 319, 469
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 304
PsyI GACNNNGTC 1 cut(s) 235
RsaI GTAC 3 cut(s) 5, 263, 299
RsaNI GTAC 3 cut(s) 4, 262, 298
SacI GAGCTC 1 cut(s) 485
SaqAI TTAA 1 cut(s) 396
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 4 cut(s) 114, 187, 319, 469
SchI GAGTC 3 cut(s) 77, 226, 422
ScrFI CCNGG 3 cut(s) 94, 117, 478
SduI GDGCHC 1 cut(s) 485
SetI ASST 7 cut(s) 110, 164, 321, 348, 361, 403, 485
SfaNI GCATC 1 cut(s) 340
SgrAI CRCCGGYG 1 cut(s) 133
SinI GGWCC 3 cut(s) 187, 319, 469
Sse9I AATT 8 cut(s) 10, 25, 31, 218, 255, 265, 324, 444
SsiI CCGC 1 cut(s) 69
SspI AATATT 1 cut(s) 505
SstI GAGCTC 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 92, 115, 476
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 3 cut(s) 150, 421, 456
TaqI TCGA 1 cut(s) 174
TasI AATT 8 cut(s) 10, 25, 31, 218, 255, 265, 324, 444
TatI WGTACW 2 cut(s) 261, 297
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 2 cut(s) 153, 391
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 2 cut(s) 153, 391
Tth111I GACNNNGTC 1 cut(s) 235
VpaK11BI GGWCC 3 cut(s) 187, 319, 469
XapI RAATTY 2 cut(s) 10, 444
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.