Rh6CG260400

Acyl-coenzyme A thioesterase 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018167
Physical Location & Seq
Reverse (-)
43266333 .. 43267899
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG260400.1

Sequence Viewer

Length: 528 bp
ATGTACCCAAATTCATCTCCTTCCAATTCCAATTCCAACACCACCATTCCGGTAGTTGCAACCCTCCCCGCTCTCGGGTCGGACTCTTTGACCCGGAAGCCCATCAGCTTGTGGCCCGGAATGTTCCACTCGCCGGAGACACAGGCACTGTGGGAAGCGAGGTCTCACATGTTCGAGAGGCTCTTGGACCCACCAGCAGACGCTCCTCCACAGAGCCAATTGCTAAACAAGACTCCATCGCAGAGCAGGACTACAATTCTGTACAATTTCTCAACTGATTTTATACTGAGGGAGCAGTACAGGGATCCTTGGAATGAGGTCAGAATTGGGAAACTGCTTGAAGACCTTGATGCTTTAGCTGGAACCATTTCTGTCAAGTTCAGTGATGTGATTAAAGCTGAGGCAACGGCTCAGACGGTTGATGACTCCTTAGAGAAGGGAATTTTGGGACTGTTGCCCATCCTGGTCCTCCCCTGGAGCTCGGATTTCACACCACACAATATTCTGAGGATTCTACTCGGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
4HBT

Protein Analysis

175

Amino Acids

19.41

Weight (kDa)

5.11

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018167)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0496731 RchiOBHm_Chr6g0282071
rosa_laevigata RLG00000012911 RLG00000012915 RLG00000036813
rosa_multiflora Rmu_sc0001700.1_g000034 Rmu_sc0005149.1_g000003 Rmu_sc0011075.1_g000010
rosa_rugosa Rorug06G0145200
rosa_samantha Rh6CG260400
rosa_wichuraiana Rw6G022340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 71
AciI CCGC 1 cut(s) 69
AclWI GGATC 2 cut(s) 299, 312
AcsI RAATTY 2 cut(s) 10, 441
AfaI GTAC 3 cut(s) 5, 263, 299
AfiI CCNNNNNNNGG 3 cut(s) 74, 75, 133
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 2 cut(s) 462, 473
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 4 cut(s) 108, 359, 398, 480
AluI AGCT 4 cut(s) 108, 359, 398, 480
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 2 cut(s) 131, 168
AlwI GGATC 2 cut(s) 299, 312
AlwNI CAGNNNCTG 1 cut(s) 148
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 10, 441
Asp700I GAANNNNTTC 1 cut(s) 367
AspS9I GGNCC 3 cut(s) 114, 187, 466
AsuC2I CCSGG 2 cut(s) 94, 117
AvaI CYCGRG 1 cut(s) 74
AvaII GGWCC 2 cut(s) 187, 466
BamHI GGATCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 482
BbvCI CCTCAGC 1 cut(s) 399
BccI CCATC 3 cut(s) 110, 244, 467
BceAI ACGGC 1 cut(s) 423
BciT130I CCWGG 2 cut(s) 464, 475
BcnI CCSGG 2 cut(s) 94, 117
BcoDI GTCTC 2 cut(s) 131, 168
Bme1390I CCNGG 4 cut(s) 94, 117, 464, 475
Bme18I GGWCC 2 cut(s) 187, 466
BmeT110I CYCGRG 1 cut(s) 74
BmgT120I GGNCC 3 cut(s) 114, 187, 466
BmiI GGNNCC 3 cut(s) 189, 306, 364
BmrFI CCNGG 4 cut(s) 94, 117, 464, 475
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 496
Bpu10I CCTNAGC 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 94, 117
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 308, 473
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 75, 133
BseBI CCWGG 2 cut(s) 464, 475
BseDI CCNNGG 2 cut(s) 308, 473
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 3 cut(s) 74, 75, 133
BseMII CTCAG 4 cut(s) 278, 390, 425, 497
BseRI GAGGAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 482
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 4 cut(s) 50, 94, 117, 134
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 3 cut(s) 74, 75, 133
BsmAI GTCTC 2 cut(s) 131, 168
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 482
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 1 cut(s) 304
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 115
BspCNI CTCAG 4 cut(s) 279, 391, 424, 498
BspLI GGNNCC 3 cut(s) 189, 306, 364
BspPI GGATC 2 cut(s) 299, 312
BspTNI GGTCTC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 308, 473
BssMI GATC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 464, 475
Bst4CI ACNGT 3 cut(s) 150, 418, 453
BstAUI TGTACA 1 cut(s) 261
BstDEI CTNAG 5 cut(s) 287, 399, 411, 430, 506
BstF5I GGATG 1 cut(s) 459
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 2 cut(s) 131, 168
BstMBI GATC 1 cut(s) 304
BstNI CCWGG 2 cut(s) 464, 475
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 4 cut(s) 92, 115, 462, 473
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 115
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 2 cut(s) 146, 388
CaiI CAGNNNCTG 1 cut(s) 148
Cfr13I GGNCC 3 cut(s) 114, 187, 466
CseI GACGC 1 cut(s) 209
Csp6I GTAC 3 cut(s) 4, 262, 298
CviAII CATG 1 cut(s) 169
CviQI GTAC 3 cut(s) 4, 262, 298
DdeI CTNAG 5 cut(s) 287, 399, 411, 430, 506
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Ecl136II GAGCTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 482
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 2 cut(s) 187, 466
Eco53kI GAGCTC 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 74
EcoICRI GAGCTC 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 462, 473
EcoT14I CCWWGG 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 308
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 170, 284
FaqI GGGAC 1 cut(s) 462
FatI CATG 1 cut(s) 168
FauI CCCGC 1 cut(s) 76
FokI GGATG 1 cut(s) 446
FriOI GRGCYC 1 cut(s) 482
GsuI CTGGAG 1 cut(s) 496
HaeIII GGCC 1 cut(s) 115
HapII CCGG 4 cut(s) 50, 94, 117, 134
HgaI GACGC 1 cut(s) 209
Hin1II CATG 1 cut(s) 172
HinfI GANTC 4 cut(s) 83, 232, 425, 511
HpaII CCGG 4 cut(s) 50, 94, 117, 134
Hpy188I TCNGA 5 cut(s) 82, 323, 414, 484, 507
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 2 cut(s) 30, 430
HpyCH4III ACNGT 3 cut(s) 150, 418, 453
HpyCH4V TGCA 1 cut(s) 59
HpyF3I CTNAG 5 cut(s) 287, 399, 411, 430, 506
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 3 cut(s) 208, 292, 477
LweI GCATC 1 cut(s) 340
MalI GATC 1 cut(s) 306
MbiI CCGCTC 1 cut(s) 71
MboI GATC 1 cut(s) 304
MboII GAAGA 1 cut(s) 353
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 8 cut(s) 10, 25, 31, 218, 255, 265, 324, 441
MlyI GAGTC 3 cut(s) 77, 226, 419
MmeI TCCRAC 2 cut(s) 60, 60
MnlI CCTC 9 cut(s) 74, 153, 171, 216, 282, 310, 394, 479, 501
MroXI GAANNNNTTC 1 cut(s) 367
MseI TTAA 1 cut(s) 393
MspI CCGG 4 cut(s) 50, 94, 117, 134
MspR9I CCNGG 4 cut(s) 94, 117, 464, 475
MunI CAATTG 1 cut(s) 218
MvaI CCWGG 2 cut(s) 464, 475
NciI CCSGG 2 cut(s) 94, 117
NdeII GATC 1 cut(s) 304
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 3 cut(s) 189, 306, 364
NmeAIII GCCGAG 1 cut(s) 498
NspI RCATGY 1 cut(s) 172
PciI ACATGT 1 cut(s) 168
PdmI GAANNNNTTC 1 cut(s) 367
PfeI GAWTC 1 cut(s) 511
PleI GAGTC 3 cut(s) 77, 226, 419
PpsI GAGTC 3 cut(s) 77, 226, 419
PscI ACATGT 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 482
Psp6I CCWGG 2 cut(s) 462, 473
PspGI CCWGG 2 cut(s) 462, 473
PspN4I GGNNCC 3 cut(s) 189, 306, 364
PspPI GGNCC 3 cut(s) 114, 187, 466
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 3 cut(s) 5, 263, 299
RsaNI GTAC 3 cut(s) 4, 262, 298
SacI GAGCTC 1 cut(s) 482
SaqAI TTAA 1 cut(s) 393
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 3 cut(s) 114, 187, 466
SchI GAGTC 3 cut(s) 77, 226, 419
ScrFI CCNGG 4 cut(s) 94, 117, 464, 475
SduI GDGCHC 1 cut(s) 482
SetI ASST 7 cut(s) 110, 164, 321, 348, 361, 400, 482
SfaNI GCATC 1 cut(s) 340
SinI GGWCC 2 cut(s) 187, 466
Sse9I AATT 8 cut(s) 10, 25, 31, 218, 255, 265, 324, 441
SsiI CCGC 1 cut(s) 69
SspI AATATT 1 cut(s) 502
SstI GAGCTC 1 cut(s) 482
StyD4I CCNGG 4 cut(s) 92, 115, 462, 473
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 3 cut(s) 150, 418, 453
TaqI TCGA 1 cut(s) 174
TasI AATT 8 cut(s) 10, 25, 31, 218, 255, 265, 324, 441
TatI WGTACW 2 cut(s) 261, 297
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 2 cut(s) 153, 388
TspRI CASTG 2 cut(s) 153, 388
VpaK11BI GGWCC 2 cut(s) 187, 466
XapI RAATTY 2 cut(s) 10, 441
XceI RCATGY 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.