Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005149.1

Orthogroup ID

OG0018167

Physical Location & Seq

Genomic Coordinates Reverse (-)

16907 .. 17290

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005149.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atggacccaaactcatctccttccaattccaccaccaccattccggtagttgcaaccctccccgctttcgggtcggaccctttgacccggaagcccatcagcttgtggcctggaatgttccactcgccggtgacacaggcactgtgggaagcgaggtctcacatgttcgagaggctcttggacccaccagcagacgctcctccgcagagccaattgctaaactttatactgagggagcagcacagggatccttggaatgaggtcagaattgggaaactgcttgaattccttgatgctttagctggaaccatttctgtcaaggtatcactttttagtctttctgtgtttggatttgtgggttttgcttcaaatttggttacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT

Protein Analysis

127

Amino Acids

13.99

Weight (kDa)

5.83

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018167)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496731 RchiOBHm_Chr6g0282071
rosa_laevigata	RLG00000012911 RLG00000012915 RLG00000036813
rosa_multiflora	Rmu_sc0001700.1_g000034 Rmu_sc0005149.1_g000003 Rmu_sc0011075.1_g000010
rosa_rugosa	Rorug06G0145200
rosa_samantha	Rh6CG260400
rosa_wichuraiana	Rw6G022340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	63, 203
AclWI	GGATC	2 cut(s)	242, 255
AcsI	RAATTY	2 cut(s)	284, 370
AfiI	CCNNNNNNNGG	3 cut(s)	68, 69, 127
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	284, 369
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	102, 302
AluI	AGCT	2 cut(s)	102, 302
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	242, 255
AlwNI	CAGNNNCTG	1 cut(s)	142
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	238
ApoI	RAATTY	2 cut(s)	284, 370
Asp700I	GAANNNNTTC	1 cut(s)	310
AspS9I	GGNCC	3 cut(s)	4, 76, 181
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	142
AvaII	GGWCC	3 cut(s)	4, 76, 181
BamHI	GGATCC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	162
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	88, 111
Bme18I	GGWCC	3 cut(s)	4, 76, 181
BmgT120I	GGNCC	3 cut(s)	4, 76, 181
BmiI	GGNNCC	5 cut(s)	6, 78, 183, 249, 307
BmrFI	CCNGG	2 cut(s)	88, 111
BmsI	GCATC	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 69, 127
Bse118I	RCCGGY	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	3 cut(s)	68, 69, 127
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	250
BshFI	GGCC	1 cut(s)	109
BsiSI	CCGG	3 cut(s)	44, 88, 128
BslI	CCNNNNNNNGG	3 cut(s)	68, 69, 127
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	247
BspACI	CCGC	2 cut(s)	63, 203
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	5 cut(s)	6, 78, 183, 249, 307
BspPI	GGATC	2 cut(s)	242, 255
BspTNI	GGTCTC	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	1 cut(s)	247
BssT1I	CCWWGG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	144
BstDEI	CTNAG	1 cut(s)	230
BstKTI	GATC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	247
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	86, 109
BstV1I	GCAGC	1 cut(s)	250
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	4, 76, 181
CseI	GACGC	1 cut(s)	203
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	6 cut(s)	94, 102, 109, 175, 210, 302
CviKI_1	RGCY	6 cut(s)	94, 102, 109, 175, 210, 302
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	1 cut(s)	249
DpnII	GATC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	162
Eco47I	GGWCC	3 cut(s)	4, 76, 181
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	1 cut(s)	166
FaiI	YATR	2 cut(s)	164, 227
FatI	CATG	1 cut(s)	162
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	3 cut(s)	44, 88, 128
HgaI	GACGC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	166
HpaII	CCGG	3 cut(s)	44, 88, 128
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	2 cut(s)	76, 266
Hpy188III	TCNNGA	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	247
LmnI	GCTCC	2 cut(s)	202, 235
LpnPI	CCDG	9 cut(s)	57, 96, 101, 122, 123, 141, 201, 229, 288
Lsp1109I	GCAGC	1 cut(s)	250
LweI	GCATC	1 cut(s)	283
MaeIII	GTNAC	2 cut(s)	130, 376
MalI	GATC	1 cut(s)	249
MboI	GATC	1 cut(s)	247
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	5 cut(s)	25, 212, 267, 284, 370
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	68, 147, 165, 210, 225, 253
MroXI	GAANNNNTTC	1 cut(s)	310
MspI	CCGG	3 cut(s)	44, 88, 128
MspR9I	CCNGG	2 cut(s)	88, 111
MunI	CAATTG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	111
NciI	CCSGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	5 cut(s)	6, 78, 183, 249, 307
NmuCI	GTSAC	1 cut(s)	130
NspI	RCATGY	1 cut(s)	166
PciI	ACATGT	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	310
PkrI	GCNGC	1 cut(s)	240
PscI	ACATGT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	5 cut(s)	6, 78, 183, 249, 307
PspPI	GGNCC	3 cut(s)	4, 76, 181
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	247
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	247
Sau96I	GGNCC	3 cut(s)	4, 76, 181
ScrFI	CCNGG	2 cut(s)	88, 111
SetI	ASST	5 cut(s)	104, 158, 264, 304, 324
SfaNI	GCATC	1 cut(s)	283
SgrAI	CRCCGGYG	1 cut(s)	127
SinI	GGWCC	3 cut(s)	4, 76, 181
Sse9I	AATT	5 cut(s)	25, 212, 267, 284, 370
SsiI	CCGC	2 cut(s)	63, 203
StyD4I	CCNGG	2 cut(s)	86, 109
StyI	CCWWGG	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	25, 212, 267, 284, 370
TscAI	CASTG	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	130
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	3 cut(s)	4, 76, 181
XapI	RAATTY	2 cut(s)	284, 370
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.